LOCUS       NM_001399016            2383 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tubulin, epsilon 1 (Tube1), mRNA.
ACCESSION   NM_001399016 XM_006256528
VERSION     NM_001399016.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2383)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Dec 29, 2021 this sequence version replaced XM_006256528.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.64532.1,
                                           SRR26360172.313314.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-110               JAXUCZ010000020.1  44107029-44107138
            111-184             JAXUCZ010000020.1  44107238-44107311
            185-237             JAXUCZ010000020.1  44107943-44107995
            238-295             JAXUCZ010000020.1  44110556-44110613
            296-411             JAXUCZ010000020.1  44114522-44114637
            412-533             JAXUCZ010000020.1  44116083-44116204
            534-721             JAXUCZ010000020.1  44118237-44118424
            722-897             JAXUCZ010000020.1  44118610-44118785
            898-1038            JAXUCZ010000020.1  44119707-44119847
            1039-1179           JAXUCZ010000020.1  44121878-44122018
            1180-1354           JAXUCZ010000020.1  44122317-44122491
            1355-2383           JAXUCZ010000020.1  44123911-44124939
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q12"
     gene            1..2383
                     /gene="Tube1"
                     /note="tubulin, epsilon 1"
                     /db_xref="GeneID:361856"
                     /db_xref="RGD:1306048"
     exon            1..110
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..1513
                     /gene="Tube1"
                     /note="epsilon-tubulin 1"
                     /codon_start=1
                     /product="tubulin epsilon chain"
                     /protein_id="NP_001385945.1"
                     /db_xref="GeneID:361856"
                     /db_xref="RGD:1306048"
                     /translation="MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDDAISSF
                     FRNVDTRAVGDCGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDI
                     SGSGNNWAVGHKVFGSLYREQILEKLRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLL
                     KVLEDEFPEVYRFVTAVYPSSEDDVITSPYNSMLAMKELSEHADCVLPIDNQSLFDII
                     SKIDLVVNSGKLGSAVKPKSLITSNTGPVKKRHKKPFDAMNNIVANLLLSLTSSARFE
                     GSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKGHQLL
                     QADPRHGLYLACALIVRGEVQISDLRRNIERLKPALQFVSWNQEGWKTSLCSVPPVGH
                     PHSLLALANNTCVKPTFLELRERFMRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSAL
                     IQEYSDLDATKSMPVPDVPRLSVAS"
     exon            111..184
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            185..237
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            238..295
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            296..411
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            412..533
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            534..721
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            722..897
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            898..1038
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1179
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            1180..1354
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
     exon            1355..2383
                     /gene="Tube1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtagcgcgtc gttgggctcg aatgctaagg cgggagtgcg agcgggagta cgagcgggaa
       61 tgctcctgct agtccgcccg gcggaatgac ccagtcggtg gtcgtacagg tcggacagtg
      121 cgggaaccag atcggctgct gcttctggga cctggcactg agggagcatg ccgcggtcaa
      181 ccagaaagga atttatgacg atgcaataag cagcttcttc aggaatgtgg ataccagagc
      241 ggttggggat tgtggcagca tttccaaagg aaggatatcc tctttgaaag cacgggctgt
      301 tttgattgac atggaagaag gagtggtgaa tgaaattctc cagggcccac tgagggacgt
      361 gtttgatagc aaacagctca tcacagacat ctctggctca ggaaataact gggctgtggg
      421 tcacaaagtt tttggaagtc tttaccggga acagattcta gagaaactcc ggaagtcggc
      481 agagcactgc gattgcctac agtgcttctt catcatccac tccatgggag gaggaacagg
      541 ctctggactt ggcacatttc tgttaaaggt gcttgaagac gagttcccag aagtgtaccg
      601 gtttgtgaca gcggtttacc cttccagcga ggacgatgtc atcacctcgc cttacaacag
      661 catgttggcc atgaaggagc tcagtgagca cgctgactgc gtgctaccca tcgacaacca
      721 atctttattt gacatcatta gcaaaatcga tcttgtggta aattctggaa agttgggctc
      781 agctgtgaag cctaagagtc tcattacttc gaacacgggg cccgttaaaa agcgccacaa
      841 gaaacccttc gacgccatga acaacattgt ggcgaatctg ctcctcagcc tgacaagctc
      901 tgcgaggttc gagggctccc tgaatatgga cctgaatgag atcagcatga acttggtgcc
      961 cttcccacag cttcattatc tcgtgtcgag cctgacaccg ctgtacacgc tggcggatgt
     1021 taacattcct ccccggagat tggatcagat gttttcagac gcctttagta aaggccacca
     1081 gctcctccaa gcagacccca gacatggtct ctacctcgcc tgtgctctca tcgttagagg
     1141 ggaggtacag atttccgatc tccgcagaaa cattgaaaga ttaaagcccg ccctgcagtt
     1201 tgtgtcctgg aatcaggaag gctggaagac aagcctgtgc tctgtccctc ctgtgggcca
     1261 cccgcattca ctgttagctc tggcgaataa cacatgtgtg aagccgacct tcctggagct
     1321 gagagagagg ttcatgcggc tctacaagaa gaaggctcac ctccatcact acctgcaagt
     1381 cgatgggatg gaggaaagca cttttacgga agccgtgtcc tctctgtcag cgctcataca
     1441 ggagtacagt gacctggatg ccacaaagag catgcctgtg ccagatgtgc ccaggctgag
     1501 cgtggcctcg tgagggaaga agccgagaga tgcaatggtt acttttttct gattctcatc
     1561 cagtttcgtc ccctttctgt ttcagcattt ttttctgact cagaaagccc aatttgtttt
     1621 ccacagtatc gggaagtatt ttatctaaaa tggtggtttc tattttatta caactgttta
     1681 taccagtgtg tggtatcact tctagcaatt cgctaacatt gagagagagc ccgacatggt
     1741 gcaatcccag cgtcgctggc atgcaggggg acgtgcgttc ggggccgacg tagaggaagg
     1801 agcagttctt catgccctgt ctctacttgt aacttttata ataaacgctt taaaagcaaa
     1861 tgtgtgaaca gggcagcttg tgctggctga gcgtgtcgcc gttgtcgtgc gcaccaacat
     1921 cttcatcgga actgtgtggc aaatgttctc atgtactgct ccgatcacca catctccctt
     1981 cggaatcgtc agggttggtc tcagtgattg agctttcaag ggaataattt taaggggaga
     2041 attcttttca ggcaaaaata acctggtgtg tgctgactta ttactatttt ctttttcctt
     2101 tctttgagtg atcgttttgt gtttgctttt tatcttagaa gtttagactt ttatagtatt
     2161 tggaatgaaa actgcagtat ttcagttatt aagagacact cagttattac agacattcta
     2221 gtttctcctt cctagaagaa tcccaactga tattcagaac acgaagatga tgagtctgca
     2281 tttatagtgt catcttattt ctaagagttt tgctgtccct ctactaatgt gacagggtct
     2341 gatagactgt attgccaagc acagaataaa atgttaaagt atg
//
