LOCUS       XM_003749638            1676 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin, beta 1 class VI (Tubb1),
            transcript variant X1, mRNA.
ACCESSION   XM_003749638
VERSION     XM_003749638.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003749638.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003749638.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1676
                     /gene="Tubb1"
                     /note="tubulin, beta 1 class VI; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 33
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 60 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:679312"
                     /db_xref="RGD:1589557"
     CDS             102..1460
                     /gene="Tubb1"
                     /codon_start=1
                     /product="tubulin beta-1 chain isoform X1"
                     /protein_id="XP_003749686.1"
                     /db_xref="GeneID:679312"
                     /db_xref="RGD:1589557"
                     /translation="MREIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSALQL
                     ERISVYYNEAYGKKYVPRAVLVDLEPGTMDSIRSSRLGILFQPDSFVHGNSGAGNNWA
                     KGHYTEGAELIETVMDVVRRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYP
                     DRILNSFSVMPSPKVSDTVVEPYNAVLSIHQLIENTDACFCIDNEALYDICFRTLRLT
                     TPTYGDLNHLVSLTMSGITTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQ
                     GSQQYRALSVAELTQQMFDARNIMAACDPRRGRYLTVACIFRGKMSTKEVDQQLLSIQ
                     TRNSNCFVEWIPNNVKVAVCDIPPRGLNMAATFLGNNTAIQELFTRVSEHFSAMFRRR
                     AFVHWYTSEGMDISEFGEAEADILDLVSEYQQFQDVRAGLEDIEEGGEEEAEMGAEDK
                     NH"
ORIGIN      
        1 ggctggtccc accaagacca tgaaactgca cccagctctc actggtgacc caggctcttc
       61 cagactcttc gacctaactg acccttgggt tcaaggctag gatgcgggaa atcgtgcaca
      121 ttcagattgg ccagtgtggc aaccagatcg gagccaagtt ctgggaggtg atcggggaag
      181 aacatgggat tgactgcgct gggagctact gcgggacttc agcccttcag ctggagagaa
      241 tcagcgttta ctacaacgaa gcctacggta agaagtacgt gccccgagct gtccttgtgg
      301 acctggaacc tgggacaatg gacagcatcc gatccagcag attgggaatc ctctttcagc
      361 ctgacagttt tgttcacggt aactctggtg ctggtaacaa ttgggccaag ggccactaca
      421 cagagggagc ggagctgatc gagacggtca tggatgtggt gaggagagag agcgagagct
      481 gcgactgcct gcaaggtttc cagatcgtgc actctctggg tggaggcaca ggctcaggca
      541 tgggcaccct gctcatgaac aagatcaggg aggagtaccc ggatcggatc cttaattcct
      601 ttagcgtcat gccgtccccc aaggtgtcag acaccgtggt agagccctac aacgcggtgc
      661 tctccatcca ccagctgata gagaacacag atgcctgctt ctgcatcgac aacgaagcac
      721 tctacgatat ctgtttccgc accctgaggc tgaccacgcc cacttacggg gacctcaacc
      781 acctggtgtc cttgaccatg agtgggatca cgacctcact gcgttttccg ggccagctta
      841 atgcagacct gcgcaagctg gcagtgaata tggtgccctt tcctcgtctt cacttcttca
      901 tgcctggctt cgctccactc acagcccagg gtagccagca gtaccgagcc ctctcagtgg
      961 cggagctcac ccaacagatg ttcgatgccc gcaacatcat ggctgcctgt gatcctcgcc
     1021 gtggccgcta cctgactgtg gcttgtatct tccggggtaa gatgtccacc aaggaagtgg
     1081 atcaacagct gctgtccatt cagacaagga acagcaactg ctttgtggaa tggatcccca
     1141 acaatgtcaa ggtagctgtg tgtgacatcc caccccgggg actgaacatg gcggctacct
     1201 tcctgggtaa caatacagcc attcaagagc tcttcacccg ggtctctgag cacttctcag
     1261 ccatgttcag gaggagagct tttgtgcact ggtacaccag tgaagggatg gacataagtg
     1321 agtttgggga agcggaggca gacatcctcg acctggtgtc cgagtaccaa caattccaag
     1381 atgtccgagc agggctagag gacatcgaag agggtgggga ggaggaggca gagatggggg
     1441 cagaagacaa aaaccattag ctaggagaga agctagaagg cagccacttt cagaagtttc
     1501 tccaaagatc tgtggctgtc ctgaagccct tagggccctc atccctcacc tcggcatagc
     1561 agtgagagca gcaaggcttt cgcccacagt tcctagacag gacttgatag tcaaatgcac
     1621 attgttcctt ctttctttct ttctttcttt ctttctttct ttctttcttc cttcct
//
