LOCUS       XM_056984463            5713 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin tyrosine ligase like 8
            (Ttll8), transcript variant X1, mRNA.
ACCESSION   XM_056984463
VERSION     XM_056984463.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056984463.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5713
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5713
                     /gene="Ttll8"
                     /note="tubulin tyrosine ligase like 8; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 25 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     13 samples with support for all annotated introns"
                     /db_xref="GeneID:315214"
                     /db_xref="RGD:1306462"
     CDS             774..3557
                     /gene="Ttll8"
                     /codon_start=1
                     /product="protein monoglycylase TTLL8 isoform X1"
                     /protein_id="XP_056840443.1"
                     /db_xref="GeneID:315214"
                     /db_xref="RGD:1306462"
                     /translation="MACSVQGLSPRPRPRPHPRPGPGRSLDRNTGLDLEPRFCVKASN
                     SVRTASRVPSLRRCQRIPLSRSPPQSLPPVRPRSPTPRVGRRSARRKLRRQRHGSAQC
                     IAQARPVALGNRKTPGRSGRRSAAAARAVGRVPAGAGGQRNQLREASMENGERKKLTS
                     TLSDGDHKEENKLKQGIPQDLSSSPKLDRYKIARQLTEKAIKEKKIFSIYGHYPVIRA
                     TLRRKGWVEKKFNFFPKPLQNVEGEDKSAETKENQEIALERFDDIHDVMSRLVKNEIP
                     YLLWTIKRDVVDYHSLTCDQMLNHYGKTASFTTKIGLCLNMRSLPWYVQANPNTFFPR
                     CYGLCTESEKQEFLDDFRRTVAASILKWVVHHQNYCNRAKGKSKKEEAKNGDPSPKKD
                     PDNPDLKLPSLSGQVVDTACKVCQAYLGQLEHEDIDLSDASAEALSEEEWNDLTQQYY
                     LLVHGNASITDSRSYFAQCQALLSKISSVNPQTEIDGIRNIWIIKPAAKSRGRDIVCM
                     DRVENILDLVATDSQTTKDNKWVVQKYIETPMLIYDTKFDIRQWFLVTDWNPLTIWFY
                     KESYLRFSTQRFSLDKLDSAIHLCNNSIQRRLKNDKERSPLLPCHNMWTSTRFQEYLQ
                     KRGRGGTWGSIIYPSMKRAVTNAMRVAQDHVEARKNSFELYGADFILGRDFKPWLIEI
                     NSSPTMHPSTPVTAQLCAQVQEDTIKVVVDRKLDRNCDIGNFELLWRQPAVELPPFNG
                     SDLCVEGISVKKAKKQMPPIANLGFSDSLLDAPTKARSARPLPETVIGPSRMTVRPDW
                     KREEAKVLSNTWSAPVMAAEVRGQAKPTYAFDVNNYQHVDSKAYKSTFTKVQSGKHSE
                     VNLISAQYPALVLQNMQRTQSPPPRASGSRRDSMPFCPIVFEELWLHPSSQRRPSSCI
                     LQNRAQGWIRGIP"
ORIGIN      
        1 tatgatacct gaagagcaaa atctgttaaa gatgccattg atcaagtcgt tctcaacctt
       61 tctaaagcta gggcccccta acatagtccc acatgttatg gcgaccccga ctataaaatg
      121 atgccactgc tacttcgtaa gtgtaatgtt gctagttatg aaaagtgacc cctgtgaatg
      181 gggtcgcgac ccacaggttg agaaccatgg ctttaaaccc acgggaaatt acctgaagtt
      241 tgagctttag aacaatgata actctgacag agtgccagcc tttcctcaac acaacccaag
      301 gtgccaccca cataggcaca aacacagggc aaacacagga actaacctgg taaggcctgg
      361 atggcaagtg gcgctggctg tcagggacct cctggaaaca ccagggcgac agcacaggta
      421 tcccactaat aaacctaggg accaaggcca cttgatgttc ctctgggcac agaggactta
      481 ctctgcccac cctgatctca gtagacactc tgctggcaag gggagaacgt ctgtctggaa
      541 gaacccttgg actccgtcca tctcaggcct aagtggaggc ttctcatgga caacaaggga
      601 gccaggaggg aggaagtcga gggtggggca gggtgtgacc catagtcttt gtgacttggt
      661 gtagtctgag tgcccgggtt gtctgtgtga ccctggcagg tgcgtgggag atgtggagca
      721 ggagcacatg acccaggcga gggtcgcagg cacttaagga ctaatcctga cgcatggcct
      781 gctccgtcca gggacttagt ccccgccctc gcccccgacc ccacccccgc ccaggccctg
      841 gccgctcctt ggaccgtaac acgggactgg atctagaacc aaggttctgt gtgaaagcca
      901 gcaacagcgt ccggactgcg tctcgggtgc cctctttgcg ccgctgtcag cggattcctc
      961 tttcacgcag ccccccgcag tctctgccgc ctgtgcgtcc acgaagcccc acacccagag
     1021 tggggcgccg ctcagcacgc cgaaagctcc gccgccagcg ccacgggtct gcacaatgca
     1081 tcgcgcaggc aaggccggtt gccctgggca accgcaagac gcctggccgc tcgggccgcc
     1141 gctccgctgc cgcagcacgc gctgtagggc gggtcccagc aggggctggg ggccagagaa
     1201 accagctacg agaggcaagc atggagaatg gagagaggaa gaagctgact tccactttgt
     1261 ccgatggaga tcacaaagaa gaaaataagt taaaacaagg aattccccaa gatttgtctt
     1321 cttcccccaa attagacaga tacaaaatag caagacagtt aacagagaaa gccatcaagg
     1381 agaagaagat tttctccatc tacggacact accctgtcat ccgggccacg ttgcggagaa
     1441 agggctgggt ggagaagaag ttcaatttct ttcccaaacc tcttcagaac gttgaaggtg
     1501 aagataaaag tgctgagacc aaagaaaatc aagaaatagc cctggaaaga ttcgatgata
     1561 ttcacgatgt gatgtccagg ttggtaaaga acgagatacc gtacctcctc tggaccatca
     1621 aaagggatgt cgtggactac cacagcctga cgtgtgacca gatgctaaac cactatggga
     1681 agacagcatc attcacgacc aagattggac tctgcctgaa catgaggagt ctgccttggt
     1741 acgtccaagc caacccgaac accttcttcc cacgttgcta tggcctttgc actgagagcg
     1801 agaagcagga attcttggat gacttccggc gtacagtggc tgccagcatc ctcaagtggg
     1861 tagtccatca ccagaattac tgcaacagag ccaagggcaa gagtaagaag gaggaggcca
     1921 agaatggtga ccccagcccc aagaaagatc ctgataatcc tgacctcaag ttaccaagcc
     1981 tctcaggaca ggttgtagac acagcatgca aggtgtgcca ggcctacctg ggacagctgg
     2041 agcatgagga catcgacctg tcagacgcga gcgccgaggc cttgtccgag gaggaatgga
     2101 acgacctgac acaacaatac tacttgctgg ttcatggcaa tgcttccatc acggattcga
     2161 gaagttactt tgcgcagtgc caagctctgc tgagtaagat cagctctgtg aacccccaga
     2221 ccgagattga cgggatacgg aacatctgga tcattaagcc tgcagccaag tcccggggcc
     2281 gagatattgt gtgcatggac cgtgtggaga acatcctgga tctggtggcc acagacagcc
     2341 agaccacgaa ggacaacaaa tgggtggtcc agaagtacat cgagaccccg atgctcatct
     2401 atgacaccaa gtttgacatc agacagtggt tccttgtcac agactggaat cccctaacca
     2461 tctggttcta caaagagagc tacctccggt tctccacgca gcgcttctcc ctggacaaac
     2521 tggacagcgc catccacctg tgtaacaact ccatccagag gcgtctcaaa aatgacaaag
     2581 aacgaagtcc actgctacct tgccataaca tgtggaccag cacccgcttc caggagtacc
     2641 tgcagaagag gggccgagga ggcacatggg gtagtatcat ctacccgtct atgaaaagag
     2701 ctgtcaccaa cgccatgagg gtggcccagg accatgtaga agcccgtaag aatagcttcg
     2761 agctctatgg agcagacttc attctggggc gagacttcaa gccctggctc atcgagatca
     2821 actccagccc caccatgcac ccctccactc ctgtcacagc tcagctctgc gcccaggtgc
     2881 aggaggacac catcaaggtt gtggtggacc gaaaactgga ccgaaactgt gacatcggca
     2941 actttgagct tctgtggagg cagcctgccg tggagctgcc accgttcaat gggtctgacc
     3001 tctgtgtgga aggtatcagt gtgaagaaag ccaagaagca aatgccgccc attgccaacc
     3061 tcggcttttc agactcgctc ttagatgctc caaccaaagc gcggagcgcc cggcccctgc
     3121 cggagacagt gattgggccc tccagaatga ccgtgagacc ggactggaaa cgggaagagg
     3181 caaaggtact ttcaaacacc tggtcggcgc cagtaatggc tgctgaggtc agaggtcaag
     3241 caaagcccac ctatgcattc gacgtcaata actaccaaca tgtagacagt aaggcctata
     3301 agagcacttt taccaaagtc caatccggta aacactcaga ggtaaactta ataagtgcgc
     3361 agtaccctgc cctggtgcta cagaatatgc agaggaccca gtctccacca cccagagcgt
     3421 caggtagccg tagggactct atgcctttct gtcccattgt atttgaggag ctctggctcc
     3481 accccagctc tcagagaaga ccttcaagct gcattctcca aaacagggca cagggctgga
     3541 tcaggggtat cccctgagag gatctcacaa gcaaaggggt gcgggggcgc actggcactg
     3601 acctgggcag acactaggtg taatgttggc caaggcgggt agcatactta ctcctgtcgc
     3661 aatagtgggg tgtccagtgg ggtttcctca gtactcttgt ttcctcagat agagcaggga
     3721 tccagggaca ggatatagcg ctcagacagc atcacgtgcc atgaatgtgc aaggtggagg
     3781 gatcactgag ctcttgcaca cgctttcctg aagattcagg tggcgaggac acatctgtgg
     3841 tatgggctga agtagctgag ctgtgtttat acccaggact tcatgtggcc acctgttaac
     3901 tggcattggc tcggagagtg ttgcctcagg cccccacttt gctctgttaa aggatgcttg
     3961 tgcccccaag ctgtatccct ctacctagtt agtttctctt tcttactgcc tcccccaccc
     4021 cacctggtcc tgtctatagc tctcttctct gtgcccctgg atgggaaggt ctggagtagg
     4081 gtctctcact gccctctttg cagccgtacc ctactgccaa ggatggcagt gatgtgtgtc
     4141 aggtggacac agggatgttg ccagtcgagg ctttcggtga gcggggagca tctgggtcaa
     4201 cctccatgcc tgtgcctaag ccatcctgtg tggataactc tgcaaatgtg tctctaggaa
     4261 ccctgggact gcgcacctac agacctcttc ctgtagggaa atgtcagcag aagcaacagc
     4321 tctagctgac aatttgagtg tctctgtaac aataaccaca cacacgggta gctaaaaagg
     4381 gaaggtttaa ctctgataac caggtcaaca aaaccatgct gctgaggaca gtagagaccg
     4441 tctcccctac agttcctggt gcccgccagt gatctctgat gactggtgct tgcttcgttc
     4501 ctgcactgat ctccatgcgg gcatatgcct tccagtgtct gtttagcatt ccctttcata
     4561 agaatagcaa tcatcgtgtt agacctccca cccgcatttt agtatgacct cattccgtca
     4621 tagcatcagc aaagacacga tttccaaaga ggaaggacaa aaatctggga ggatgcgaat
     4681 ttcaccccca ttgcaggtat agattgtacc aattcacact ctggccagca ccctacgggc
     4741 agctgttgcc tgcaacactg ctgttcctgc ctcttgtgaa gtattagtaa gcttcctgca
     4801 cttgatagcg aagtgaaatt atctactgtc acatattcag caaccactct ggtttcttct
     4861 agaaagttct ggcttgcatc tttggtcaac cgtccagagg accctgggtc ccacttttct
     4921 cttacctgtc atagtttctg ttaaagactc cccctgttct gttgcatttt tgttacgaaa
     4981 cattgtttcc taccctgtaa atggtctttt cacttcttcc tggtgttttt ctttttatgt
     5041 aagaccatct taactttaat acaatcagtt taaccaacat ctccaaattt ggtgggtttt
     5101 tatttgttgt tgttgtcatt tgtcaatgaa ggactcaaga gcataaccag aaccccaggc
     5161 gtctgctagc aactggagtt cttagagtgg gagcatcgtt agcaggaggc aaggtcaata
     5221 gagtccaaac agacgcctct gggaaatcct ccccacttgg gaggtcacct ctaccaagag
     5281 gtctatgctc gcatacatag acaggcctgc ccctgcgtgt gccagcctgg ctcactgatc
     5341 tagtcctcca ccttaggtca atggtacagt gtcttcccgc tgtttacgga cttattgcct
     5401 aatgcaaatc tctccatctt gtttccttgg gaatggctga gctgtcctgc accggtactg
     5461 tcacatacgg tcaatatcaa gcaaacacca atggtaaaca ctattagaat tttagggtac
     5521 ggcacagggc accactttga acttgtatat cagtatatac aaatctacat ttgtattcag
     5581 ggtcaagctg gttcctttac cacaccgagc cttacagttc atgaatgcag tgtgcgtatt
     5641 catctgctta tccttggggg tctttcttta aatgccaata ctttaaaaat attacaagat
     5701 gagcatttga tat
//
