LOCUS       XM_039103876            7822 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin tyrosine ligase like 7
            (Ttll7), transcript variant X4, mRNA.
ACCESSION   XM_039103876
VERSION     XM_039103876.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103876.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7822
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7822
                     /gene="Ttll7"
                     /note="tubulin tyrosine ligase like 7; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 57 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 18 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310982"
                     /db_xref="RGD:1566117"
     CDS             909..3569
                     /gene="Ttll7"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL7 isoform X1"
                     /protein_id="XP_038959804.1"
                     /db_xref="GeneID:310982"
                     /db_xref="RGD:1566117"
                     /translation="MPSLPQDGVIQGSSPLELNTELPYHCTMKRKVRKKKKKGIITAN
                     VAGTKFEIVRLVIDEMGFIKTPDEDETSNLIWCDAAVQQEKITDLQNYQRINHFPGMG
                     EICRKDFLARNMTKMIKSRPMDYTFVPRTWIFPSEYTQFQNYVKELKKKRKQKTFIIK
                     PANGAMGHGISLIRNGDKIPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKI
                     FLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYSVNKHNERFERNETEDKGSKRSIKW
                     FTEFLQANQHDVTKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLG
                     FDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRKNLAKQ
                     KAEAQRRLYGQNPIRRLSPGSSDWEQQRHQLERRKEELKERLLQVRKQISQEEHENRH
                     MGNYRRIYPPEDKTLLEKYEGLLAVAFQTFLSGRATSFHREMNNPLKKMREEDLLDLL
                     EQCEIDDEKLMGKTTRVRGPKPLYCMPECAEVMKMQKYYGSSDSSYDSSGSSSNSDLD
                     ESDKELCQKRLDQVPYSFKHSKLFQQSNSMRRSVSCPRSISAHLPSRGDVRPFSSQQV
                     IPLARPTSASRSHSLNRASSYMRHLPHSHDASSASNALVNESLRQLKTKEQEDDLTSQ
                     TLFVLKDMRIRFPGKSDAESELLIEDIMDNWKHYKTKVASYWLIKLDSVKQRKVLDIV
                     KSSIRTVLPRIWRVPDAEELSLYRIFNRVFNRLLWSHGQGLWSSFCDSGSSWESIFNK
                     GPEVVTPLQLQCCQRLVELCKQCLLVVYKYTTETRGPISGIGPDWGNSRYLLPGSTQF
                     LMRSPLYNMKYNSPGMTRSNVLFTSRYGRL"
ORIGIN      
        1 ccaccccctt gggaacgaca gctgctccag ctgctcctgg tcgggtcgag cttctgagct
       61 ctgaaccgtg gctgccccgg cggtgggcga gctgaggtga tcccaggacg acccgtgggg
      121 tgggccgacc ggggagcctc cagccgctgg cggggagtgt aggccaccga gggaccggcc
      181 cctggatcca gccagagagg tgcctcagct tccttccacc tccatggtgt tccctgaacc
      241 attgccggag gcgctgtgag gtagagaacc cattggtgct acactctgca cgaccacttc
      301 atctttgcat cgtgtccagc tgtggtttcc tgtagtggtc cccgtttgct gtaaagagag
      361 gcttctttga tgtggggtgg tagctacggt catctgtggg tagaaagaag taagaagtca
      421 aacctgaagt cctgcagctg actcatggag taatggatgt gtattgtctc tgattctaac
      481 gcacatcaca agaagggacc tgttcctttc cgacacagca attccaagat aaaatccgat
      541 cactgaatta ctcagcacct gcaatcacgt gtgcacccaa ggcaggggag caaatagtga
      601 gagtccactg gaaaactgct ctcccagttg ttactgggag gtcccgccaa accaagtcct
      661 ttcattcttc ccattggcgg cctcaatgcc tacgctttta gactcatctg gtcacttccg
      721 tctaaggacg tcaggtagca tcccagccca aaacttgtgc cgtgaaatcc aagactgtga
      781 cccagataat gtaataggat cttcctatga tttggggcca tatcctactt agatgaactt
      841 gggacatcca gccttaccaa gcacttggaa ctacacacag gctccgtgct tgcttggtat
      901 aggttaccat gccatctctg cctcaagatg gggttattca gggatcatct cccctggagc
      961 tgaatacaga attaccttat cactgcacaa tgaaaaggaa agtcagaaaa aagaaaaaga
     1021 agggaattat tacagcgaat gttgctggaa caaagtttga aattgttcgt ttagtaatag
     1081 atgagatggg atttatcaaa actcctgatg aagacgagac gagcaacctt atctggtgcg
     1141 atgctgctgt tcagcaggag aagattacgg acctgcagaa ctaccagaga atcaaccatt
     1201 ttccaggaat gggggagatc tgtaggaagg atttcttagc aagaaatatg acgaagatga
     1261 tcaagtctcg gcccatggat tatacctttg ttcctcgaac gtggattttc ccttctgagt
     1321 atactcaatt ccaaaactat gtgaaagaat tgaagaaaaa acggaagcag aaaactttta
     1381 taataaaacc agctaatggt gcaatgggtc atgggatttc attgataaga aatggggata
     1441 aaattccatc tcaggatcat ttgatagttc aagaatacat tgaaaagcct ttcctaatgg
     1501 aaggctacaa gttcgattta cggatttata ttttggttac atcctgtgat ccactaaaga
     1561 tattcctcta ccacgatggg cttgtgcgaa tggggacgga gaagtacatt ccaccaaacg
     1621 agtccaactt gacccagtta tacatgcatc tgaccaacta ctcagtgaac aaacacaatg
     1681 aacggtttga acgcaatgaa acggaagaca aaggcagcaa gcgttcaatc aagtggttta
     1741 ccgaattcct acaggccaat caacacgatg ttaccaagtt ctggagcgat atctcggagt
     1801 tggtggtaaa gacgctgatt gtagcagaac ctcatgtcct gcacgcttat cggatgtgca
     1861 gacccggcca gccccccggg agcgaaagcg tctgcttcga agtcctgggc ttcgacatct
     1921 tgttggatag aaagctcaag ccatggcttc tggagattaa tcgagcccca agctttggaa
     1981 ctgatcagaa aatagactat gacgtcaaac ggggggttct gctaaatgca ctgaagctgc
     2041 tgaatatcag gaccagcgat aaaaggaaaa acttagccaa gcaaaaggca gaggctcaga
     2101 gaaggctgta tggtcaaaat ccaataagaa ggctttcgcc aggctcctcc gactgggaac
     2161 agcagaggca ccagctggag aggcggaaag aagagttgaa agagagactc cttcaagtac
     2221 gaaagcagat ttcccaagaa gaacatgaaa accgacacat ggggaattac aggagaattt
     2281 atcctccaga agataaaaca ctgcttgaga agtatgaagg tctgctggct gtcgccttcc
     2341 agaccttcct ctcgggaaga gcgacttcct tccatcgaga gatgaacaat cctctgaaga
     2401 agatgcggga ggaagatctt ctggatctcc tggaacagtg tgaaatcgat gatgaaaagc
     2461 tgatggggaa aaccacccgg gtccgaggac cgaagcccct gtactgcatg ccagagtgtg
     2521 cggaagtcat gaagatgcag aagtattacg gcagcagtga cagcagctac gatagcagcg
     2581 gcagcagcag caactctgat ctggacgaga gcgataaaga actgtgtcag aagagactag
     2641 accaagtccc atatagcttt aagcacagca agctattcca gcaatccaat tccatgaggc
     2701 gttcggtcag ctgccctcgg tccatctctg ctcacttacc ttccagaggg gatgtgcgcc
     2761 ccttttcttc tcaacaagtg ataccattag cacgaccaac ttcagcgtct cggtcacatt
     2821 ccttaaaccg cgcttcctcc tacatgagac acctgcctca cagtcacgac gccagctctg
     2881 ccagcaacgc tctggtgaac gagtctttgc ggcaactgaa gacaaaagag caggaagacg
     2941 acctcaccag tcagaccttg tttgtcctca aggacatgag gatccgcttt ccggggaagt
     3001 cggacgcaga gtcagagctc ctgatagaag atatcatgga taactggaag cattataaaa
     3061 caaaagtggc ttcatattgg ctcataaaac tggactccgt aaagcaacgg aaagttttgg
     3121 acatagtaaa atcaagtatc cgtacagttc ttccaaggat ctggagggtc cccgatgctg
     3181 aagaactgag tctgtaccgg attttcaaca gggtattcaa tcgcctactc tggagccacg
     3241 gccagggact gtggagctct ttctgtgatt caggatcctc ctgggagagc atcttcaata
     3301 agggcccgga ggtggtgacc cctctgcagc tccagtgctg ccagcgcctg gtggagctct
     3361 gcaaacagtg tctgcttgtg gtttacaaat acacgacgga gaccagagga cccatctcgg
     3421 gcattggtcc cgactggggt aactccaggt atttgctacc aggaagtact caattcctca
     3481 tgaggtcacc actgtacaac atgaaatata attcacccgg aatgactcgc tccaatgttt
     3541 tgtttacgtc ccgatatggc cgtttgtgaa actgagtgga agattgccat gggcggtgca
     3601 taatagccat tcatttattt tctccagttg aaccttaagg aagcgaccct tacgtgctgt
     3661 tttatgtata tatgtcatat aagtgtgtga aatacataca cacatgcact caagtaacat
     3721 ataaatatat atatttatta tatgtaagaa gaattagcag aagactgaat ataagattta
     3781 acctttctgg aaatgtaata aaccatgtta aagttgttta cacaaatacg caaatgtgta
     3841 gaatttgcta ggtttataat taattacttc ctactagaaa tgttattttt tgctgcagag
     3901 ttgatcctga agatcccatc attgtgtgat aaattatttt ctagacaata gggctttcgg
     3961 cttgagaaaa cactgatcgt atcctattac ttctctctat taatagctat gtaacagtga
     4021 aacacaaggc ttagatgcct gggcttggct tcactatagg attaggataa aacgggttcc
     4081 ttgttactct agcacactgc aaagtactag gaaatatccc agcctgactc tccaacattt
     4141 tactccccta gatgggaatt tagccacttg ttctagtgtg cattttcagt aaagatctgg
     4201 taagaccatg gaatcatgca gaacgggagg caatccagtg ggtcaagaat caaatgtaaa
     4261 catactttga tttgacattt tcatggctag tcacacagag aaacaagaca atggcagtga
     4321 caggagcttt gctgtgtgac ttctgtgtca ctcttctttg gaaagcatat catggatggg
     4381 tttaagtctc tcaaagttga gaccaattta cctcacaaag tccgataaca gtagcttctc
     4441 atttcacccc agaaaagaat ctaaagaccc tgaagagaag actccagtga gcccaggcca
     4501 ctgttccatg gtgcaatctg gagggagtct ttattcaaag ttcagtgtga agttgtctcc
     4561 ctgtccagag acttcatgct tgggtttcag ggcagcacac gccgctccca ttctcgctct
     4621 tcctccctgc agtctgaaaa ccagcgtgag ctcttggcct tgcatacaaa tagagaccat
     4681 gccctgtgga cctttggact tggaaagtac aatattcact ggaacttccc tccagtggtt
     4741 atactcacac acataaagct tttgcaaatc tcggaatatt caccaccttc ccgtatcttc
     4801 atatctcttc cctgtaaagg aagaggaaac tccaaagcag ccaggggtcc cttgacctgg
     4861 tctcatccaa agctggacag gtggtgaccc aaagttgtaa gatttaagta tttcatttaa
     4921 gaactacctt tggggaatat actttttacc gcaatattca tattttttta cacacattac
     4981 cggcatcttc ttaactggtt tatggctgcc cacccacatg cattccagca gagatttttg
     5041 tactgggaac atcccacata attttgtctt actgtttttt aaagagaata aagcctccgg
     5101 gtaaagaaga tgagtgtggt atttaggagt cagtgttgtg gattcttcaa cacggcatag
     5161 attccttaga gtaaaggatg cacatgccgg aacacttctg aatcttcatg gggataataa
     5221 acaaatcagc ccctttgggg ttggtctgta gccatatttg tttttaattc ttggtttaaa
     5281 aaatcatgga ggaataaaaa aatctaaaac ttatggatat gccattgata agtgacacca
     5341 acctagtttg ttggccattt accttgtctt acctcacaaa tgatcattta gtcggataga
     5401 gtatgtactc cgaaacttct atcaggtact aggaaggaat tttcattaaa aaagagaggg
     5461 ggatgtccat gttaggaatt cttaccctag aaacacacac taaaagctaa gagtaaatgc
     5521 aattacatga aactgccagg cgattgtgaa aaaaaaaacc atgattttct tatctatcca
     5581 agcaaggcct tgttttgagc actagaatgt cattgcctcc attttccagt ttggactagt
     5641 tggacaggac gaagttgtgt agaaagccat gtgttcatta tctaagtgca ttacctggtg
     5701 tgctgtggcc tgtgtttgtc acagcaccat cccctgatga gcagccatga gaagacatga
     5761 taacgaactg tagaagtctc aggaggccag agacaggtat tagaggtata aaatattcct
     5821 tagtttttgt tacccatttc ttgtgcatat gcttccaaca tatctgtagt agaaactgta
     5881 aatctctcct taacagaaga gaaagaagac tccagaagct agttagtctc accaggattt
     5941 tttctgacaa tggactttgg tttacctaca aggaagggga tgggtgtaga cctgcagtgt
     6001 agaccacggt ggttcattgc caggttggaa tgcttacgca agctaagata cggatgattc
     6061 cccgattgtc taagtagtaa ctcgcttgtt ttatgtcctc acctgcaaac agaatctaaa
     6121 ggtacagctt ggttttcact tgagtaagcc agccctgaag ggttgaatct gttaaaagac
     6181 cctgttgcaa tatgaacgta aagttgtata tgggtgaagc aactctactg tctgtaagac
     6241 atgagggctt gcctaaatta gaaaagaaag ctcttgttac tcatctttaa agttctaacc
     6301 aagccaaaac caaacccctt tctttgacct aatgtttgtg catacacaga gagtaagtgc
     6361 ctcctaggca tcaagaaaat gatttcattc aaattatctc attagcctgg aaagtagatg
     6421 agaatgggat gatgctgacg ggaaatttta gatatttgaa tagaaattca atgctttgtt
     6481 ccttaacatg tcaatgttat tctgtgtgaa cattaccttc aaccttaaac atatgcaagg
     6541 caatacacac tattcacaga taccaaaaaa gatagctgca tacacctcat tactttatct
     6601 tctacaaagc acttattcat tcttaaatat atattcttct aaaaatagta aatacctcga
     6661 agtgacagga aattccttcc ttccctattt agcagttgct agcttacatc ccaaatccca
     6721 tgtacttggt tctaagcatt aaacaacaat aaaaatataa gtatacaatt acgttcttgt
     6781 gacctggtgg tttttggaaa tttgcttttc cctgtaaacc aagagcttta aatgtgaagg
     6841 gccatgttat ctacatatta attgttagat atttaattgt tttgaactaa tgttggcttg
     6901 tgagtaaatg aaaaccgtag aaatatattc ataaagcaaa cgattctgcg cacttctctc
     6961 tctctctctc tctctctctc tctctctctc tctctctctc ctctgttccc tgtctttaaa
     7021 tttgaagctt tagctgtaca tgatgggcaa agtaaagaaa agattgaaag attgcctttt
     7081 aaacactggt ctcccttgaa tttttatagt ggtgtgtttt tacacgagca acaataaaac
     7141 tttgatgaaa tattgggtca gtttaggagc aaggttgaag gctctatacc taagagacac
     7201 aaagcgtcga cccacgtgaa gtgagacgca ctttaacggt cttgtgactg taactgatgg
     7261 attgagatgg cacctgctga gattgcttct atgtttgagg gtctgccaca tggtaggaga
     7321 tgggtattgg aagaaattta ctcaggtaat ccactgtgag actaagagtg ttgtgtcacc
     7381 taggaatctg tataaggctt ctgctttatc accccctatg aactctaaag ctcttgcaac
     7441 gacaaacaca tcactcaaca gagtaatggt aaattgtaag aaggcttgcc tttgaacggt
     7501 ggccggataa ctattgtatt tctttcaaag gctaacagcc atttttggtc cttgagttca
     7561 tataagaact aatctacatg ctacagtatc tgaatgccaa tggagtctga atttgagggg
     7621 ggagagaata catttgctga caggactcat gggtcacatg atccctgtgt gctttgcttc
     7681 ctgtaaatga atgcagatgt tacaaagatc cgcttgaaat gccaacaaag tgtgcagctg
     7741 gcattgctgt ggcatgcgct accgtgtgac acatgtatgg cgaaactact tcaattacca
     7801 caataaaatg tcaacacaag aa
//
