LOCUS       XM_039103875            7600 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin tyrosine ligase like 7
            (Ttll7), transcript variant X3, mRNA.
ACCESSION   XM_039103875
VERSION     XM_039103875.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103875.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7600
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7600
                     /gene="Ttll7"
                     /note="tubulin tyrosine ligase like 7; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 60 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310982"
                     /db_xref="RGD:1566117"
     CDS             687..3347
                     /gene="Ttll7"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL7 isoform X1"
                     /protein_id="XP_038959803.1"
                     /db_xref="GeneID:310982"
                     /db_xref="RGD:1566117"
                     /translation="MPSLPQDGVIQGSSPLELNTELPYHCTMKRKVRKKKKKGIITAN
                     VAGTKFEIVRLVIDEMGFIKTPDEDETSNLIWCDAAVQQEKITDLQNYQRINHFPGMG
                     EICRKDFLARNMTKMIKSRPMDYTFVPRTWIFPSEYTQFQNYVKELKKKRKQKTFIIK
                     PANGAMGHGISLIRNGDKIPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKI
                     FLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYSVNKHNERFERNETEDKGSKRSIKW
                     FTEFLQANQHDVTKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLG
                     FDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRKNLAKQ
                     KAEAQRRLYGQNPIRRLSPGSSDWEQQRHQLERRKEELKERLLQVRKQISQEEHENRH
                     MGNYRRIYPPEDKTLLEKYEGLLAVAFQTFLSGRATSFHREMNNPLKKMREEDLLDLL
                     EQCEIDDEKLMGKTTRVRGPKPLYCMPECAEVMKMQKYYGSSDSSYDSSGSSSNSDLD
                     ESDKELCQKRLDQVPYSFKHSKLFQQSNSMRRSVSCPRSISAHLPSRGDVRPFSSQQV
                     IPLARPTSASRSHSLNRASSYMRHLPHSHDASSASNALVNESLRQLKTKEQEDDLTSQ
                     TLFVLKDMRIRFPGKSDAESELLIEDIMDNWKHYKTKVASYWLIKLDSVKQRKVLDIV
                     KSSIRTVLPRIWRVPDAEELSLYRIFNRVFNRLLWSHGQGLWSSFCDSGSSWESIFNK
                     GPEVVTPLQLQCCQRLVELCKQCLLVVYKYTTETRGPISGIGPDWGNSRYLLPGSTQF
                     LMRSPLYNMKYNSPGMTRSNVLFTSRYGRL"
ORIGIN      
        1 ccaccccctt gggaacgaca gctgctccag ctgctcctgg tcgggtcgag cttctgagct
       61 ctgaaccgtg gctgccccgg cggtgggcga gctgaggtga tcccaggacg acccgtgggg
      121 tgggccgacc ggggagcctc cagccgctgg cggggagtgt aggccaccga gggaccggcc
      181 cctggatcca gccagagagg tgcctcagct tccttccacc tccatggtgt tccctgaacc
      241 attgccggag gcgctgtgag gtagagaacc cattggtgct acactctgca cgaccacttc
      301 atctttgcat cgtgtccagc tgtggtttcc tgtagtggtc cccgtttgct gtaaagagag
      361 gcttctttga tgtggggtgg tagctacggt catctgtggg tagaaagaag taagaagtca
      421 aacctgaagt cctgcagctg actcatggag taatggatgt gtattgtctc tgattctaac
      481 gcacatcaca agaagggacc tgttcctttc cggtagcatc ccagcccaaa acttgtgccg
      541 tgaaatccaa gactgtgacc cagataatgt aataggatct tcctatgatt tggggccata
      601 tcctacttag atgaacttgg gacatccagc cttaccaagc acttggaact acacacaggc
      661 tccgtgcttg cttggtatag gttaccatgc catctctgcc tcaagatggg gttattcagg
      721 gatcatctcc cctggagctg aatacagaat taccttatca ctgcacaatg aaaaggaaag
      781 tcagaaaaaa gaaaaagaag ggaattatta cagcgaatgt tgctggaaca aagtttgaaa
      841 ttgttcgttt agtaatagat gagatgggat ttatcaaaac tcctgatgaa gacgagacga
      901 gcaaccttat ctggtgcgat gctgctgttc agcaggagaa gattacggac ctgcagaact
      961 accagagaat caaccatttt ccaggaatgg gggagatctg taggaaggat ttcttagcaa
     1021 gaaatatgac gaagatgatc aagtctcggc ccatggatta tacctttgtt cctcgaacgt
     1081 ggattttccc ttctgagtat actcaattcc aaaactatgt gaaagaattg aagaaaaaac
     1141 ggaagcagaa aacttttata ataaaaccag ctaatggtgc aatgggtcat gggatttcat
     1201 tgataagaaa tggggataaa attccatctc aggatcattt gatagttcaa gaatacattg
     1261 aaaagccttt cctaatggaa ggctacaagt tcgatttacg gatttatatt ttggttacat
     1321 cctgtgatcc actaaagata ttcctctacc acgatgggct tgtgcgaatg gggacggaga
     1381 agtacattcc accaaacgag tccaacttga cccagttata catgcatctg accaactact
     1441 cagtgaacaa acacaatgaa cggtttgaac gcaatgaaac ggaagacaaa ggcagcaagc
     1501 gttcaatcaa gtggtttacc gaattcctac aggccaatca acacgatgtt accaagttct
     1561 ggagcgatat ctcggagttg gtggtaaaga cgctgattgt agcagaacct catgtcctgc
     1621 acgcttatcg gatgtgcaga cccggccagc cccccgggag cgaaagcgtc tgcttcgaag
     1681 tcctgggctt cgacatcttg ttggatagaa agctcaagcc atggcttctg gagattaatc
     1741 gagccccaag ctttggaact gatcagaaaa tagactatga cgtcaaacgg ggggttctgc
     1801 taaatgcact gaagctgctg aatatcagga ccagcgataa aaggaaaaac ttagccaagc
     1861 aaaaggcaga ggctcagaga aggctgtatg gtcaaaatcc aataagaagg ctttcgccag
     1921 gctcctccga ctgggaacag cagaggcacc agctggagag gcggaaagaa gagttgaaag
     1981 agagactcct tcaagtacga aagcagattt cccaagaaga acatgaaaac cgacacatgg
     2041 ggaattacag gagaatttat cctccagaag ataaaacact gcttgagaag tatgaaggtc
     2101 tgctggctgt cgccttccag accttcctct cgggaagagc gacttccttc catcgagaga
     2161 tgaacaatcc tctgaagaag atgcgggagg aagatcttct ggatctcctg gaacagtgtg
     2221 aaatcgatga tgaaaagctg atggggaaaa ccacccgggt ccgaggaccg aagcccctgt
     2281 actgcatgcc agagtgtgcg gaagtcatga agatgcagaa gtattacggc agcagtgaca
     2341 gcagctacga tagcagcggc agcagcagca actctgatct ggacgagagc gataaagaac
     2401 tgtgtcagaa gagactagac caagtcccat atagctttaa gcacagcaag ctattccagc
     2461 aatccaattc catgaggcgt tcggtcagct gccctcggtc catctctgct cacttacctt
     2521 ccagagggga tgtgcgcccc ttttcttctc aacaagtgat accattagca cgaccaactt
     2581 cagcgtctcg gtcacattcc ttaaaccgcg cttcctccta catgagacac ctgcctcaca
     2641 gtcacgacgc cagctctgcc agcaacgctc tggtgaacga gtctttgcgg caactgaaga
     2701 caaaagagca ggaagacgac ctcaccagtc agaccttgtt tgtcctcaag gacatgagga
     2761 tccgctttcc ggggaagtcg gacgcagagt cagagctcct gatagaagat atcatggata
     2821 actggaagca ttataaaaca aaagtggctt catattggct cataaaactg gactccgtaa
     2881 agcaacggaa agttttggac atagtaaaat caagtatccg tacagttctt ccaaggatct
     2941 ggagggtccc cgatgctgaa gaactgagtc tgtaccggat tttcaacagg gtattcaatc
     3001 gcctactctg gagccacggc cagggactgt ggagctcttt ctgtgattca ggatcctcct
     3061 gggagagcat cttcaataag ggcccggagg tggtgacccc tctgcagctc cagtgctgcc
     3121 agcgcctggt ggagctctgc aaacagtgtc tgcttgtggt ttacaaatac acgacggaga
     3181 ccagaggacc catctcgggc attggtcccg actggggtaa ctccaggtat ttgctaccag
     3241 gaagtactca attcctcatg aggtcaccac tgtacaacat gaaatataat tcacccggaa
     3301 tgactcgctc caatgttttg tttacgtccc gatatggccg tttgtgaaac tgagtggaag
     3361 attgccatgg gcggtgcata atagccattc atttattttc tccagttgaa ccttaaggaa
     3421 gcgaccctta cgtgctgttt tatgtatata tgtcatataa gtgtgtgaaa tacatacaca
     3481 catgcactca agtaacatat aaatatatat atttattata tgtaagaaga attagcagaa
     3541 gactgaatat aagatttaac ctttctggaa atgtaataaa ccatgttaaa gttgtttaca
     3601 caaatacgca aatgtgtaga atttgctagg tttataatta attacttcct actagaaatg
     3661 ttattttttg ctgcagagtt gatcctgaag atcccatcat tgtgtgataa attattttct
     3721 agacaatagg gctttcggct tgagaaaaca ctgatcgtat cctattactt ctctctatta
     3781 atagctatgt aacagtgaaa cacaaggctt agatgcctgg gcttggcttc actataggat
     3841 taggataaaa cgggttcctt gttactctag cacactgcaa agtactagga aatatcccag
     3901 cctgactctc caacatttta ctcccctaga tgggaattta gccacttgtt ctagtgtgca
     3961 ttttcagtaa agatctggta agaccatgga atcatgcaga acgggaggca atccagtggg
     4021 tcaagaatca aatgtaaaca tactttgatt tgacattttc atggctagtc acacagagaa
     4081 acaagacaat ggcagtgaca ggagctttgc tgtgtgactt ctgtgtcact cttctttgga
     4141 aagcatatca tggatgggtt taagtctctc aaagttgaga ccaatttacc tcacaaagtc
     4201 cgataacagt agcttctcat ttcaccccag aaaagaatct aaagaccctg aagagaagac
     4261 tccagtgagc ccaggccact gttccatggt gcaatctgga gggagtcttt attcaaagtt
     4321 cagtgtgaag ttgtctccct gtccagagac ttcatgcttg ggtttcaggg cagcacacgc
     4381 cgctcccatt ctcgctcttc ctccctgcag tctgaaaacc agcgtgagct cttggccttg
     4441 catacaaata gagaccatgc cctgtggacc tttggacttg gaaagtacaa tattcactgg
     4501 aacttccctc cagtggttat actcacacac ataaagcttt tgcaaatctc ggaatattca
     4561 ccaccttccc gtatcttcat atctcttccc tgtaaaggaa gaggaaactc caaagcagcc
     4621 aggggtccct tgacctggtc tcatccaaag ctggacaggt ggtgacccaa agttgtaaga
     4681 tttaagtatt tcatttaaga actacctttg gggaatatac tttttaccgc aatattcata
     4741 tttttttaca cacattaccg gcatcttctt aactggttta tggctgccca cccacatgca
     4801 ttccagcaga gatttttgta ctgggaacat cccacataat tttgtcttac tgttttttaa
     4861 agagaataaa gcctccgggt aaagaagatg agtgtggtat ttaggagtca gtgttgtgga
     4921 ttcttcaaca cggcatagat tccttagagt aaaggatgca catgccggaa cacttctgaa
     4981 tcttcatggg gataataaac aaatcagccc ctttggggtt ggtctgtagc catatttgtt
     5041 tttaattctt ggtttaaaaa atcatggagg aataaaaaaa tctaaaactt atggatatgc
     5101 cattgataag tgacaccaac ctagtttgtt ggccatttac cttgtcttac ctcacaaatg
     5161 atcatttagt cggatagagt atgtactccg aaacttctat caggtactag gaaggaattt
     5221 tcattaaaaa agagaggggg atgtccatgt taggaattct taccctagaa acacacacta
     5281 aaagctaaga gtaaatgcaa ttacatgaaa ctgccaggcg attgtgaaaa aaaaaaccat
     5341 gattttctta tctatccaag caaggccttg ttttgagcac tagaatgtca ttgcctccat
     5401 tttccagttt ggactagttg gacaggacga agttgtgtag aaagccatgt gttcattatc
     5461 taagtgcatt acctggtgtg ctgtggcctg tgtttgtcac agcaccatcc cctgatgagc
     5521 agccatgaga agacatgata acgaactgta gaagtctcag gaggccagag acaggtatta
     5581 gaggtataaa atattcctta gtttttgtta cccatttctt gtgcatatgc ttccaacata
     5641 tctgtagtag aaactgtaaa tctctcctta acagaagaga aagaagactc cagaagctag
     5701 ttagtctcac caggattttt tctgacaatg gactttggtt tacctacaag gaaggggatg
     5761 ggtgtagacc tgcagtgtag accacggtgg ttcattgcca ggttggaatg cttacgcaag
     5821 ctaagatacg gatgattccc cgattgtcta agtagtaact cgcttgtttt atgtcctcac
     5881 ctgcaaacag aatctaaagg tacagcttgg ttttcacttg agtaagccag ccctgaaggg
     5941 ttgaatctgt taaaagaccc tgttgcaata tgaacgtaaa gttgtatatg ggtgaagcaa
     6001 ctctactgtc tgtaagacat gagggcttgc ctaaattaga aaagaaagct cttgttactc
     6061 atctttaaag ttctaaccaa gccaaaacca aacccctttc tttgacctaa tgtttgtgca
     6121 tacacagaga gtaagtgcct cctaggcatc aagaaaatga tttcattcaa attatctcat
     6181 tagcctggaa agtagatgag aatgggatga tgctgacggg aaattttaga tatttgaata
     6241 gaaattcaat gctttgttcc ttaacatgtc aatgttattc tgtgtgaaca ttaccttcaa
     6301 ccttaaacat atgcaaggca atacacacta ttcacagata ccaaaaaaga tagctgcata
     6361 cacctcatta ctttatcttc tacaaagcac ttattcattc ttaaatatat attcttctaa
     6421 aaatagtaaa tacctcgaag tgacaggaaa ttccttcctt ccctatttag cagttgctag
     6481 cttacatccc aaatcccatg tacttggttc taagcattaa acaacaataa aaatataagt
     6541 atacaattac gttcttgtga cctggtggtt tttggaaatt tgcttttccc tgtaaaccaa
     6601 gagctttaaa tgtgaagggc catgttatct acatattaat tgttagatat ttaattgttt
     6661 tgaactaatg ttggcttgtg agtaaatgaa aaccgtagaa atatattcat aaagcaaacg
     6721 attctgcgca cttctctctc tctctctctc tctctctctc tctctctctc tctctctcct
     6781 ctgttccctg tctttaaatt tgaagcttta gctgtacatg atgggcaaag taaagaaaag
     6841 attgaaagat tgccttttaa acactggtct cccttgaatt tttatagtgg tgtgttttta
     6901 cacgagcaac aataaaactt tgatgaaata ttgggtcagt ttaggagcaa ggttgaaggc
     6961 tctataccta agagacacaa agcgtcgacc cacgtgaagt gagacgcact ttaacggtct
     7021 tgtgactgta actgatggat tgagatggca cctgctgaga ttgcttctat gtttgagggt
     7081 ctgccacatg gtaggagatg ggtattggaa gaaatttact caggtaatcc actgtgagac
     7141 taagagtgtt gtgtcaccta ggaatctgta taaggcttct gctttatcac cccctatgaa
     7201 ctctaaagct cttgcaacga caaacacatc actcaacaga gtaatggtaa attgtaagaa
     7261 ggcttgcctt tgaacggtgg ccggataact attgtatttc tttcaaaggc taacagccat
     7321 ttttggtcct tgagttcata taagaactaa tctacatgct acagtatctg aatgccaatg
     7381 gagtctgaat ttgagggggg agagaataca tttgctgaca ggactcatgg gtcacatgat
     7441 ccctgtgtgc tttgcttcct gtaaatgaat gcagatgtta caaagatccg cttgaaatgc
     7501 caacaaagtg tgcagctggc attgctgtgg catgcgctac cgtgtgacac atgtatggcg
     7561 aaactacttc aattaccaca ataaaatgtc aacacaagaa
//
