LOCUS       XM_039103873            7403 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin tyrosine ligase like 7
            (Ttll7), transcript variant X1, mRNA.
ACCESSION   XM_039103873
VERSION     XM_039103873.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103873.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7403
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7403
                     /gene="Ttll7"
                     /note="tubulin tyrosine ligase like 7; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 62 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 77 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310982"
                     /db_xref="RGD:1566117"
     CDS             490..3150
                     /gene="Ttll7"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL7 isoform X1"
                     /protein_id="XP_038959801.1"
                     /db_xref="GeneID:310982"
                     /db_xref="RGD:1566117"
                     /translation="MPSLPQDGVIQGSSPLELNTELPYHCTMKRKVRKKKKKGIITAN
                     VAGTKFEIVRLVIDEMGFIKTPDEDETSNLIWCDAAVQQEKITDLQNYQRINHFPGMG
                     EICRKDFLARNMTKMIKSRPMDYTFVPRTWIFPSEYTQFQNYVKELKKKRKQKTFIIK
                     PANGAMGHGISLIRNGDKIPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKI
                     FLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYSVNKHNERFERNETEDKGSKRSIKW
                     FTEFLQANQHDVTKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLG
                     FDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRKNLAKQ
                     KAEAQRRLYGQNPIRRLSPGSSDWEQQRHQLERRKEELKERLLQVRKQISQEEHENRH
                     MGNYRRIYPPEDKTLLEKYEGLLAVAFQTFLSGRATSFHREMNNPLKKMREEDLLDLL
                     EQCEIDDEKLMGKTTRVRGPKPLYCMPECAEVMKMQKYYGSSDSSYDSSGSSSNSDLD
                     ESDKELCQKRLDQVPYSFKHSKLFQQSNSMRRSVSCPRSISAHLPSRGDVRPFSSQQV
                     IPLARPTSASRSHSLNRASSYMRHLPHSHDASSASNALVNESLRQLKTKEQEDDLTSQ
                     TLFVLKDMRIRFPGKSDAESELLIEDIMDNWKHYKTKVASYWLIKLDSVKQRKVLDIV
                     KSSIRTVLPRIWRVPDAEELSLYRIFNRVFNRLLWSHGQGLWSSFCDSGSSWESIFNK
                     GPEVVTPLQLQCCQRLVELCKQCLLVVYKYTTETRGPISGIGPDWGNSRYLLPGSTQF
                     LMRSPLYNMKYNSPGMTRSNVLFTSRYGRL"
ORIGIN      
        1 ccaccccctt gggaacgaca gctgctccag ctgctcctgg tcgggtcgag cttctgagct
       61 ctgaaccgtg gctgccccgg cggtgggcga gctgaggtga tcccaggacg acccgtgggg
      121 tgggccgacc ggggagcctc cagccgctgg cggggagtgt aggccaccga gggaccggcc
      181 cctggatcca gccagagagg tgcctcagct aagtaagaag tcaaacctga agtcctgcag
      241 ctgactcatg gagtaatgga tgtgtattgt ctctgattct aacgcacatc acaagaaggg
      301 acctgttcct ttccggtagc atcccagccc aaaacttgtg ccgtgaaatc caagactgtg
      361 acccagataa tgtaatagga tcttcctatg atttggggcc atatcctact tagatgaact
      421 tgggacatcc agccttacca agcacttgga actacacaca ggctccgtgc ttgcttggta
      481 taggttacca tgccatctct gcctcaagat ggggttattc agggatcatc tcccctggag
      541 ctgaatacag aattacctta tcactgcaca atgaaaagga aagtcagaaa aaagaaaaag
      601 aagggaatta ttacagcgaa tgttgctgga acaaagtttg aaattgttcg tttagtaata
      661 gatgagatgg gatttatcaa aactcctgat gaagacgaga cgagcaacct tatctggtgc
      721 gatgctgctg ttcagcagga gaagattacg gacctgcaga actaccagag aatcaaccat
      781 tttccaggaa tgggggagat ctgtaggaag gatttcttag caagaaatat gacgaagatg
      841 atcaagtctc ggcccatgga ttataccttt gttcctcgaa cgtggatttt cccttctgag
      901 tatactcaat tccaaaacta tgtgaaagaa ttgaagaaaa aacggaagca gaaaactttt
      961 ataataaaac cagctaatgg tgcaatgggt catgggattt cattgataag aaatggggat
     1021 aaaattccat ctcaggatca tttgatagtt caagaataca ttgaaaagcc tttcctaatg
     1081 gaaggctaca agttcgattt acggatttat attttggtta catcctgtga tccactaaag
     1141 atattcctct accacgatgg gcttgtgcga atggggacgg agaagtacat tccaccaaac
     1201 gagtccaact tgacccagtt atacatgcat ctgaccaact actcagtgaa caaacacaat
     1261 gaacggtttg aacgcaatga aacggaagac aaaggcagca agcgttcaat caagtggttt
     1321 accgaattcc tacaggccaa tcaacacgat gttaccaagt tctggagcga tatctcggag
     1381 ttggtggtaa agacgctgat tgtagcagaa cctcatgtcc tgcacgctta tcggatgtgc
     1441 agacccggcc agccccccgg gagcgaaagc gtctgcttcg aagtcctggg cttcgacatc
     1501 ttgttggata gaaagctcaa gccatggctt ctggagatta atcgagcccc aagctttgga
     1561 actgatcaga aaatagacta tgacgtcaaa cggggggttc tgctaaatgc actgaagctg
     1621 ctgaatatca ggaccagcga taaaaggaaa aacttagcca agcaaaaggc agaggctcag
     1681 agaaggctgt atggtcaaaa tccaataaga aggctttcgc caggctcctc cgactgggaa
     1741 cagcagaggc accagctgga gaggcggaaa gaagagttga aagagagact ccttcaagta
     1801 cgaaagcaga tttcccaaga agaacatgaa aaccgacaca tggggaatta caggagaatt
     1861 tatcctccag aagataaaac actgcttgag aagtatgaag gtctgctggc tgtcgccttc
     1921 cagaccttcc tctcgggaag agcgacttcc ttccatcgag agatgaacaa tcctctgaag
     1981 aagatgcggg aggaagatct tctggatctc ctggaacagt gtgaaatcga tgatgaaaag
     2041 ctgatgggga aaaccacccg ggtccgagga ccgaagcccc tgtactgcat gccagagtgt
     2101 gcggaagtca tgaagatgca gaagtattac ggcagcagtg acagcagcta cgatagcagc
     2161 ggcagcagca gcaactctga tctggacgag agcgataaag aactgtgtca gaagagacta
     2221 gaccaagtcc catatagctt taagcacagc aagctattcc agcaatccaa ttccatgagg
     2281 cgttcggtca gctgccctcg gtccatctct gctcacttac cttccagagg ggatgtgcgc
     2341 cccttttctt ctcaacaagt gataccatta gcacgaccaa cttcagcgtc tcggtcacat
     2401 tccttaaacc gcgcttcctc ctacatgaga cacctgcctc acagtcacga cgccagctct
     2461 gccagcaacg ctctggtgaa cgagtctttg cggcaactga agacaaaaga gcaggaagac
     2521 gacctcacca gtcagacctt gtttgtcctc aaggacatga ggatccgctt tccggggaag
     2581 tcggacgcag agtcagagct cctgatagaa gatatcatgg ataactggaa gcattataaa
     2641 acaaaagtgg cttcatattg gctcataaaa ctggactccg taaagcaacg gaaagttttg
     2701 gacatagtaa aatcaagtat ccgtacagtt cttccaagga tctggagggt ccccgatgct
     2761 gaagaactga gtctgtaccg gattttcaac agggtattca atcgcctact ctggagccac
     2821 ggccagggac tgtggagctc tttctgtgat tcaggatcct cctgggagag catcttcaat
     2881 aagggcccgg aggtggtgac ccctctgcag ctccagtgct gccagcgcct ggtggagctc
     2941 tgcaaacagt gtctgcttgt ggtttacaaa tacacgacgg agaccagagg acccatctcg
     3001 ggcattggtc ccgactgggg taactccagg tatttgctac caggaagtac tcaattcctc
     3061 atgaggtcac cactgtacaa catgaaatat aattcacccg gaatgactcg ctccaatgtt
     3121 ttgtttacgt cccgatatgg ccgtttgtga aactgagtgg aagattgcca tgggcggtgc
     3181 ataatagcca ttcatttatt ttctccagtt gaaccttaag gaagcgaccc ttacgtgctg
     3241 ttttatgtat atatgtcata taagtgtgtg aaatacatac acacatgcac tcaagtaaca
     3301 tataaatata tatatttatt atatgtaaga agaattagca gaagactgaa tataagattt
     3361 aacctttctg gaaatgtaat aaaccatgtt aaagttgttt acacaaatac gcaaatgtgt
     3421 agaatttgct aggtttataa ttaattactt cctactagaa atgttatttt ttgctgcaga
     3481 gttgatcctg aagatcccat cattgtgtga taaattattt tctagacaat agggctttcg
     3541 gcttgagaaa acactgatcg tatcctatta cttctctcta ttaatagcta tgtaacagtg
     3601 aaacacaagg cttagatgcc tgggcttggc ttcactatag gattaggata aaacgggttc
     3661 cttgttactc tagcacactg caaagtacta ggaaatatcc cagcctgact ctccaacatt
     3721 ttactcccct agatgggaat ttagccactt gttctagtgt gcattttcag taaagatctg
     3781 gtaagaccat ggaatcatgc agaacgggag gcaatccagt gggtcaagaa tcaaatgtaa
     3841 acatactttg atttgacatt ttcatggcta gtcacacaga gaaacaagac aatggcagtg
     3901 acaggagctt tgctgtgtga cttctgtgtc actcttcttt ggaaagcata tcatggatgg
     3961 gtttaagtct ctcaaagttg agaccaattt acctcacaaa gtccgataac agtagcttct
     4021 catttcaccc cagaaaagaa tctaaagacc ctgaagagaa gactccagtg agcccaggcc
     4081 actgttccat ggtgcaatct ggagggagtc tttattcaaa gttcagtgtg aagttgtctc
     4141 cctgtccaga gacttcatgc ttgggtttca gggcagcaca cgccgctccc attctcgctc
     4201 ttcctccctg cagtctgaaa accagcgtga gctcttggcc ttgcatacaa atagagacca
     4261 tgccctgtgg acctttggac ttggaaagta caatattcac tggaacttcc ctccagtggt
     4321 tatactcaca cacataaagc ttttgcaaat ctcggaatat tcaccacctt cccgtatctt
     4381 catatctctt ccctgtaaag gaagaggaaa ctccaaagca gccaggggtc ccttgacctg
     4441 gtctcatcca aagctggaca ggtggtgacc caaagttgta agatttaagt atttcattta
     4501 agaactacct ttggggaata tactttttac cgcaatattc atattttttt acacacatta
     4561 ccggcatctt cttaactggt ttatggctgc ccacccacat gcattccagc agagattttt
     4621 gtactgggaa catcccacat aattttgtct tactgttttt taaagagaat aaagcctccg
     4681 ggtaaagaag atgagtgtgg tatttaggag tcagtgttgt ggattcttca acacggcata
     4741 gattccttag agtaaaggat gcacatgccg gaacacttct gaatcttcat ggggataata
     4801 aacaaatcag cccctttggg gttggtctgt agccatattt gtttttaatt cttggtttaa
     4861 aaaatcatgg aggaataaaa aaatctaaaa cttatggata tgccattgat aagtgacacc
     4921 aacctagttt gttggccatt taccttgtct tacctcacaa atgatcattt agtcggatag
     4981 agtatgtact ccgaaacttc tatcaggtac taggaaggaa ttttcattaa aaaagagagg
     5041 gggatgtcca tgttaggaat tcttacccta gaaacacaca ctaaaagcta agagtaaatg
     5101 caattacatg aaactgccag gcgattgtga aaaaaaaaac catgattttc ttatctatcc
     5161 aagcaaggcc ttgttttgag cactagaatg tcattgcctc cattttccag tttggactag
     5221 ttggacagga cgaagttgtg tagaaagcca tgtgttcatt atctaagtgc attacctggt
     5281 gtgctgtggc ctgtgtttgt cacagcacca tcccctgatg agcagccatg agaagacatg
     5341 ataacgaact gtagaagtct caggaggcca gagacaggta ttagaggtat aaaatattcc
     5401 ttagtttttg ttacccattt cttgtgcata tgcttccaac atatctgtag tagaaactgt
     5461 aaatctctcc ttaacagaag agaaagaaga ctccagaagc tagttagtct caccaggatt
     5521 ttttctgaca atggactttg gtttacctac aaggaagggg atgggtgtag acctgcagtg
     5581 tagaccacgg tggttcattg ccaggttgga atgcttacgc aagctaagat acggatgatt
     5641 ccccgattgt ctaagtagta actcgcttgt tttatgtcct cacctgcaaa cagaatctaa
     5701 aggtacagct tggttttcac ttgagtaagc cagccctgaa gggttgaatc tgttaaaaga
     5761 ccctgttgca atatgaacgt aaagttgtat atgggtgaag caactctact gtctgtaaga
     5821 catgagggct tgcctaaatt agaaaagaaa gctcttgtta ctcatcttta aagttctaac
     5881 caagccaaaa ccaaacccct ttctttgacc taatgtttgt gcatacacag agagtaagtg
     5941 cctcctaggc atcaagaaaa tgatttcatt caaattatct cattagcctg gaaagtagat
     6001 gagaatggga tgatgctgac gggaaatttt agatatttga atagaaattc aatgctttgt
     6061 tccttaacat gtcaatgtta ttctgtgtga acattacctt caaccttaaa catatgcaag
     6121 gcaatacaca ctattcacag ataccaaaaa agatagctgc atacacctca ttactttatc
     6181 ttctacaaag cacttattca ttcttaaata tatattcttc taaaaatagt aaatacctcg
     6241 aagtgacagg aaattccttc cttccctatt tagcagttgc tagcttacat cccaaatccc
     6301 atgtacttgg ttctaagcat taaacaacaa taaaaatata agtatacaat tacgttcttg
     6361 tgacctggtg gtttttggaa atttgctttt ccctgtaaac caagagcttt aaatgtgaag
     6421 ggccatgtta tctacatatt aattgttaga tatttaattg ttttgaacta atgttggctt
     6481 gtgagtaaat gaaaaccgta gaaatatatt cataaagcaa acgattctgc gcacttctct
     6541 ctctctctct ctctctctct ctctctctct ctctctctct cctctgttcc ctgtctttaa
     6601 atttgaagct ttagctgtac atgatgggca aagtaaagaa aagattgaaa gattgccttt
     6661 taaacactgg tctcccttga atttttatag tggtgtgttt ttacacgagc aacaataaaa
     6721 ctttgatgaa atattgggtc agtttaggag caaggttgaa ggctctatac ctaagagaca
     6781 caaagcgtcg acccacgtga agtgagacgc actttaacgg tcttgtgact gtaactgatg
     6841 gattgagatg gcacctgctg agattgcttc tatgtttgag ggtctgccac atggtaggag
     6901 atgggtattg gaagaaattt actcaggtaa tccactgtga gactaagagt gttgtgtcac
     6961 ctaggaatct gtataaggct tctgctttat caccccctat gaactctaaa gctcttgcaa
     7021 cgacaaacac atcactcaac agagtaatgg taaattgtaa gaaggcttgc ctttgaacgg
     7081 tggccggata actattgtat ttctttcaaa ggctaacagc catttttggt ccttgagttc
     7141 atataagaac taatctacat gctacagtat ctgaatgcca atggagtctg aatttgaggg
     7201 gggagagaat acatttgctg acaggactca tgggtcacat gatccctgtg tgctttgctt
     7261 cctgtaaatg aatgcagatg ttacaaagat ccgcttgaaa tgccaacaaa gtgtgcagct
     7321 ggcattgctg tggcatgcgc taccgtgtga cacatgtatg gcgaaactac ttcaattacc
     7381 acaataaaat gtcaacacaa gaa
//
