LOCUS       XM_039087716            2372 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin tyrosine ligase like 6
            (Ttll6), transcript variant X1, mRNA.
ACCESSION   XM_039087716
VERSION     XM_039087716.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2372
                     /gene="Ttll6"
                     /note="tubulin tyrosine ligase like 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:287646"
                     /db_xref="RGD:1311922"
     CDS             354..2357
                     /gene="Ttll6"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL6 isoform X1"
                     /protein_id="XP_038943644.1"
                     /db_xref="GeneID:287646"
                     /db_xref="RGD:1311922"
                     /translation="MLQCLTLESEEGAEEREESSTEDLEELKKLVALAFVRENTQKRL
                     QNAQQHGKKKRKKKRLVINLSNCRYDSVRRAAQQYGLREAGDNDDWTLYWTDYSVSLE
                     RVMEMKSYQKINHFPGMSEICRKDLLARNMSRMLKLFPKDFHFFPRTWCLPADWGDLQ
                     TYSRTRKNKTYICKPDSGCQGRGIFITRSVKEIKPGEDMICQLYISKPFIIDGFKFDL
                     RVYVLVTSCDPLRVFVYNEGLARFATTSYSHPNTENLDEICMHLTNYSINKHSSNFIQ
                     DAHSGSKRKLSTFNSYMKTHGYDVEQIWRAIEDVIIKTLISAHPVIKHNYHTCFPSHT
                     LNSACFEILGFDILLDRKLKPWLLEVNHSPSFSTDSKLDKEVKDSLLYDALVLVNLGS
                     CDKKKVLEEERQRGRFLQQCPNREIRMEEVKGFQAVRLQKTEEYEKKNCGGFRLIYPG
                     QNLEKYEKFFQDNSSLFQNTVASRARELYARQLIQELRQKQQNKFFLKKERKEEMQGE
                     SAGEQARDKIVRLQRPRQQPKCKPATCPPKQSFHPVNLGSRASSLLLNIRGLKKSETA
                     RSLDQKDSKNEVVLIPCKPVSARNYSSVPDLRSSNPSYSELEFHMANSKVKEVKSAFS
                     VNIVSSAQVLGPLGLRAAMRVLRVEPGLSFMADPISPAHSRAI"
ORIGIN      
        1 agcgtcctcc gcgtctccag ggacaacctt ggcactaccc tctgcgggcg cggcgacggt
       61 taatcagatt cccgattgag ggggcatggc cgcctgccgc aggggccaat cgaaagcctg
      121 ggaggcccta tatgcaaata tgagggccgg gaggacccga ggttaggagg ggctcagatt
      181 ggggtcgcgg taccctgaat gtggctgcca atgggagcct gaattcctcc gagaaggaat
      241 ggttcggcta gggtgattgc gggcgatctg agccgcccag tcggggagag ccggggcagt
      301 agcaacgcgg ggagggctga tgtttccccg gagcctcctc cagggctagg aagatgctac
      361 agtgcctgac tttagaaagt gaggaagggg ctgaagagag ggaggagagt tccacagaag
      421 atctagagga gctaaaaaaa ttggtcgctc tggcttttgt gagagagaac acacaaaaga
      481 ggcttcagaa tgcccagcag catggcaaga aaaagaggaa gaaaaaaaga ttggtgatca
      541 atctatccaa ctgccggtat gacagcgtgc gcagggctgc ccagcaatat ggccttcgag
      601 aggcgggtga caatgatgac tggactctct attggaccga ctactcagtg tcgctggagc
      661 gagtgatgga aatgaagagc tatcagaaaa tcaatcattt tcctgggatg agtgagatct
      721 gccgcaagga cttgctggcc cggaatatga gccgcatgct aaagctgttt cctaaggact
      781 tccatttctt ccccaggacc tggtgtcttc ctgctgactg gggagatttg cagacttaca
      841 gccggacaag aaaaaataag acttacattt gtaagccgga ctcgggttgc caggggagag
      901 gcatattcat tacccggtcg gtgaaagaaa tcaagccagg agaggatatg atctgccagc
      961 tttatatttc aaagcccttc atcatcgacg ggttcaagtt tgaccttcgg gtttatgtgc
     1021 tggtgacctc ctgtgaccct ctcagggttt ttgtgtacaa tgaaggactg gctcgctttg
     1081 ctactacctc ttactctcac cccaacacag aaaacctgga tgagatctgt atgcacctga
     1141 ccaattattc tatcaataag cacagttcca acttcattca agatgcgcat tctggcagca
     1201 agaggaaact ctccaccttc aactcataca tgaagaccca cggctacgat gtggagcaga
     1261 tctggagggc cattgaggac gtcatcatca agactctcat atcagctcac ccagtcatca
     1321 agcacaacta ccacacctgc ttccccagcc acacgctcaa cagcgcctgc tttgaaatcc
     1381 tgggctttga catcttgttg gaccgaaaac tgaaaccctg gctgttggag gtcaaccatt
     1441 ctccaagctt ttccactgac tccaagttgg ataaagaggt gaaagacagc ctgctctatg
     1501 atgcgttagt cctcgtcaac ctggggagct gtgacaaaaa gaaagtcttg gaggaggaaa
     1561 gacagcgggg acggttcctg cagcagtgtc caaaccggga gatcaggatg gaggaagtca
     1621 agggcttcca ggcagtgagg ttacagaaaa cagaggaata tgaaaagaaa aactgtggcg
     1681 gcttccggct catctaccct ggtcagaatt tggagaagta tgaaaaattt ttccaagaca
     1741 atagctccct tttccagaac actgttgctt ccagagcccg ggagctgtat gcaaggcagc
     1801 tgatccagga gctgaggcag aaacagcaaa acaaattctt cctaaaaaaa gagaggaagg
     1861 aagagatgca gggcgagtct gcgggtgagc aggcaagaga caaaatcgtg cgactccagc
     1921 gaccgagaca gcagcccaag tgcaagccgg ccacctgtcc ccccaaacaa tccttccatc
     1981 cagtgaattt aggatcccga gcgtctagcc tgctcttaaa tatcagaggc ctaaagaaaa
     2041 gtgaaactgc caggagcctg gaccagaagg attccaagaa tgaggttgtc ctcattccct
     2101 gcaagccggt gtctgcaagg aactacagct ctgtccctga cctgaggagt tcaaacccca
     2161 gctactctga gttggagttc cacatggcca attccaaagt caaggaagtc aagtcggcct
     2221 tttcagtgaa catagtcagc agtgcccagg tgttaggtcc cctggggctg cgagcagcca
     2281 tgcgggtgct gagagttgaa cctggactct ctttcatggc tgaccccatc tctccagccc
     2341 acagcagagc catctgaaca gctctcaaag gt
//
