LOCUS       XM_039113310            4966 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin tyrosine ligase like 5
            (Ttll5), transcript variant X2, mRNA.
ACCESSION   XM_039113310
VERSION     XM_039113310.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113310.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4966
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4966
                     /gene="Ttll5"
                     /note="tubulin tyrosine ligase like 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 9 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     39 samples with support for all annotated introns"
                     /db_xref="GeneID:299208"
                     /db_xref="RGD:1563583"
     CDS             346..4332
                     /gene="Ttll5"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL5 isoform X1"
                     /protein_id="XP_038969238.1"
                     /db_xref="GeneID:299208"
                     /db_xref="RGD:1563583"
                     /translation="MPVVMARDLEETASSSEDEDLVNQEDHPCIMWTGGCRRIPVLVF
                     HAEAILTKDNNIRIIGERYHLSYKIVRTDSRLVRSILTAHGFHEVHPSSTDYNLMWTG
                     SHLKPFLLRTLSEAQKVNHFPRSYELTRKDRLYKNIIRMQHTHGFKAFHILPQTFLLP
                     AEYAEFCNSYSKDRGPWIVKPVASSRGRGVYLINNPNQISLEENILVSRYINNPLLID
                     DFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQGSKNIRNQFMHLTNYSVNKKS
                     GDYVSCDDPEVEDYGNKWSMSAMLRYLKQEGKDTTALMAHVEDLIIKTIISAELAIAT
                     ACKTFVPHRSSCFELYGFDVLIDNTLKPWLLEVNLSPSLACDAPLDLKIKASMISDMF
                     TVVGFVCQDPAQRASSRSIYPSFESSRRNPFQKPQRSRPLSASDAEMKNLVASAREKV
                     PGKLGGSVLGLSMEEIKVLRRVKEENDRRGGFIRIFPTSETWEIYGSYLEHKTSMNYM
                     LATRLFQDRGNTRRSLLTGRARVNTDGASELKVESMNSKAKLHAALYERKLLSLEVRK
                     RRRRSGRLRAMRPKYPVITQPAEMNIKTETESEEEEEVGLDNEDEEQEASQEESAGSL
                     AENQAKYTPSLTVIVENSPRENAMKVAEWTNKGESCCKIETQEPESKFNLMQILQDNG
                     NLSKVQARLAFSAYLQHVQVRLTKDSGGQTLSPSWAAKEDEQMELVVRFLKRASSNLQ
                     HSLRMVLPSRRLALLERRRILAHQLGDFIVVYNKETEQMAEKKSKKKLEEEEEDGVNA
                     ESFQEFIRQASEAELEEVLTFYTQKNKSASVFLGTHSKSSKNSSSYSDSGAKGDHPET
                     IQEVKIKQPKQQQATEIHSDKLSRFTTSAGKEAKLVYTNCSSFSGPAAVLLQRLPSTH
                     LSSIITTSTLSSGPGHHSSLSQISPAIPSMPHQSALLLNPVPDSASPPVHPGTPNVSP
                     AGLPRCRSGSYTIGPFSSFQSAAHIYSQKLSRPSSAKAAGSCHPHKHHSGIAKTQKEG
                     EDVSFNRRYNQSLVTAELQRLAEKQAARQYSPASHISLLTQQVTNLNLASNVINRSSA
                     STPPTLRPVISPSVPTWSMQSDLHTPENHSSPPGSRSLQTGGFAWEGEVENNAYSKAT
                     GVVPQHKYHPTAGSYQLHFALQQLEQQKLQSRQLLDQSRARHQAIFGSQTLPNSSLWT
                     MNNGPGCRISSATTGGQKPNTLPQKVVAPPNSSTLVSKPPSNHKQVLRKPASQRASKG
                     SSTEGQLNGLQSSINPAAVMPIANSTGSLEAPQVIFARSKPLPTQSGALATVIGQRKS
                     KSVKSGTI"
ORIGIN      
        1 aggcgggcgc cgccgcgctt cccacagacc ccaggagcag ctgttggctt ccgggagcgc
       61 taggcaggag cgctgcggca gagtcaccgc gtccttgcct gcagagcact tgcggggctg
      121 cctggggttg gggtgtgctg gggtggagct ggcggcaagt cccagtaggg gcaaggactt
      181 cctttggagt agtgtctgtg atcttcaaga gcatctctct cgttctgctt ctggaagtca
      241 aggaaaggag tctgtgccat ccaaattgtt tgatccactg ggactgcaag gaagaaaggt
      301 ctctgaggcc tctgtctgct gactgtatga cagaccccaa aggaaatgcc agttgtgatg
      361 gcccgggacc tggaggagac agcatcatcc tcagaggatg aggacctggt aaaccaagag
      421 gatcacccat gtattatgtg gactggaggc tgcaggagaa ttccagtttt ggttttccat
      481 gctgaggcta ttttgacaaa ggacaacaat attcgaataa ttggagaacg ttatcattta
      541 tcttataaga ttgtgagaac ggacagtcgc ctggtgcgaa gcattctgac agcccatgga
      601 tttcatgaag ttcacccaag cagcactgac tataacttga tgtggacagg atcccaccta
      661 aagcccttct tacttcgaac cctctctgaa gcacaaaagg ttaaccactt ccccaggtct
      721 tatgaactaa ctcgcaagga ccgactgtac aaaaacatca ttcggatgca acacactcac
      781 ggattcaagg cgttccacat cctcccgcag acctttctcc tgccagccga gtatgcggaa
      841 ttctgtaatt catattcaaa ggaccgagga ccttggatag taaaaccagt ggcctcttct
      901 aggggacggg gcgtctactt gatcaacaat ccaaaccaaa tttccctgga agagaacatc
      961 ttggtctccc gttacattaa caacccccta ctcatagatg atttcaagtt tgacgtgcgt
     1021 ctctatgtgc tcgtgacatc ctatgatccc cttgtcatct atctctatga ggaaggactg
     1081 gctaggtttg caactgtgcg atacgatcaa ggctccaaga acattcggaa ccagttcatg
     1141 cacctgacaa actacagtgt gaacaagaag agtggagact atgtgagttg tgatgatcca
     1201 gaagtggagg attatgggaa caagtggagt atgagtgcca tgcttaggta cctgaaacaa
     1261 gaaggcaagg atacaactgc attgatggcc catgtggaag acctgatcat taagacaata
     1321 atctctgctg aactagctat cgccactgcc tgtaaaacct ttgttccaca ccgcagcagt
     1381 tgttttgaac tgtatggctt tgatgtgctc atagataata ctctgaagcc atggttgttg
     1441 gaagtgaatc tctctccttc tctggcctgt gacgctcctc tggacctaaa gattaaagcc
     1501 agtatgatct cagatatgtt cactgttgta ggatttgtgt gccaagatcc tgcccagcgg
     1561 gcatccagcc ggtcaattta tcccagtttt gagtcttcca ggcggaaccc ttttcagaaa
     1621 cctcagcgct cccgtccact ctctgccagt gatgcagaaa tgaaaaacct tgtggcctca
     1681 gcccgggaga aggtaccggg gaagttaggc ggttctgtgc ttggtctgtc aatggaggag
     1741 atcaaagttt tacggagggt gaaggaggag aatgatcgca gaggaggatt cattcgcata
     1801 tttcctacat ctgagacatg ggaaatatat gggtcctacc ttgaacacaa aacctccatg
     1861 aactacatgc tggcaacacg cctattccag gacaggggaa acaccagaag gagcttgctg
     1921 acaggaagag cacgagtgaa tacggatgga gcatcggaac ttaaggtgga gagcatgaac
     1981 tccaaggcca agctgcacgc tgctctttat gagaggaagc tactatctct ggaggtgcga
     2041 aaacgtagac gacggagtgg cagattgagg gcaatgaggc caaaataccc agtgattacc
     2101 caaccagctg aaatgaatat taaaacggag acagagagtg aagaagagga agaggttgga
     2161 ttagacaatg aagatgaaga gcaagaagct tcccaggaag agtctgcagg atctcttgca
     2221 gaaaatcaag ccaagtacac accttcattg actgttatcg tagaaaattc acctagagaa
     2281 aatgctatga aagttgctga gtggactaat aaaggtgaat cgtgctgcaa aatcgagact
     2341 caagagcctg agtctaaatt taatctgatg cagattctcc aggataatgg caatctaagc
     2401 aaagtgcagg cccggttagc attctctgcc tatcttcagc atgtgcaagt ccgtctgaca
     2461 aaagacagtg gtggtcagac actcagtccc agctgggctg ccaaagagga cgaacagatg
     2521 gaactagtgg ttcgttttct caagcgagca tcaagtaacc tacaacactc actgaggatg
     2581 gtattaccta gtcggcggtt ggcacttctg gagcgcagaa gaatccttgc ccaccagcta
     2641 ggtgatttta tcgttgtgta taacaaggaa acagaacaaa tggctgaaaa gaaatcaaag
     2701 aagaaactag aagaagagga agaagatggg gtgaacgcag aaagctttca ggagtttatc
     2761 cgacaagcaa gtgaggctga actggaggag gtgttgactt tttataccca aaaaaacaag
     2821 tctgccagtg tcttcctggg aactcattct aaaagttcta agaacagcag tagttactct
     2881 gatagtgggg caaaaggcga tcaccctgag acaatacaag aagtgaaaat aaagcaaccc
     2941 aaacagcaac aggcaacaga aatccactcc gataaattat ctcgatttac cacttcagca
     3001 ggaaaagagg ctaaactagt gtataccaat tgttcttctt tctctggccc tgctgctgtt
     3061 ctcctgcaga gactccccag cacccatttg tcatctatta tcacaacctc taccctctcc
     3121 tcaggccctg gccaccattc ctctttatct cagatttctc cagctatccc cagcatgcct
     3181 caccagtcag cacttttact gaaccctgtc cccgacagtg cctctccccc agtacaccct
     3241 gggaccccga acgtaagccc cgctgggctg ccacgctgcc ggtcaggcag ctacaccatt
     3301 ggcccctttt cctctttcca aagtgctgcc cacatctata gccagaaact gtctcgtccc
     3361 tcttcagcaa aggcagcagg gtcatgccat ccacacaagc atcattcagg aatagccaaa
     3421 acacagaaag agggtgaaga tgtttcgttc aacagaaggt acaaccaaag tctggtcacg
     3481 gctgaactcc agcggcttgc agagaagcag gcagccaggc agtattcccc agccagccac
     3541 atcagtctcc tcacccaaca ggtgacaaac ctgaatttgg caagcaatgt cataaacaga
     3601 agcagtgcgt caaccccccc tacccttcga cctgtcatca gtcctagtgt cccgacgtgg
     3661 tctatgcagt cagacctcca cacacctgag aaccactcca gcccccctgg aagcaggagc
     3721 cttcagacag gtggctttgc ctgggagggc gaggtagaga acaacgcata cagcaaggct
     3781 acaggggtgg tcccccagca caagtaccac cccacagcag gcagctacca actccatttt
     3841 gctctccagc aactcgagca acaaaaactt cagtcccggc aacttctgga ccagagtcga
     3901 gcccggcacc aggcaatctt tggcagccag acactaccta actccagttt atggacaatg
     3961 aataatggcc caggctgcag aatttcaagt gccacaactg gtggccagaa gccaaacacc
     4021 ctgccacaaa aagtggtggc acctccaaat tcatccacgt tggtctccaa gcccccatcc
     4081 aatcacaagc aagtgctcag aaagccggca tcccagaggg cttccaaagg gtcctccaca
     4141 gaggggcagc tgaacggact ccagagcagc attaaccctg cagccgtcat gcccatcgcc
     4201 aactccacag gatctttgga agctccccag gttattttcg caagatccaa acccttaccc
     4261 acacagtctg gagcccttgc tacagttata ggacagagaa aatcaaagtc ggtgaagtca
     4321 gggacaattt aagatcctgc tcacactgac agatgaacag agactccaag ggaagaagaa
     4381 tctgctgtgt actcctggag cttgacggag gctaagcctc catggtgctg ttgaggggtc
     4441 catagtattt tttttgctgc ctctgagtcc ccaaggcctt taagcagaag tgacagtaga
     4501 cgcttgccat cagccaatcc agacttttac caggacaaca gggagacaga ccctctgggt
     4561 ttggatgaga tttggcagtg gagactctca cctgacatgt tgtgtccctg tcagagcacc
     4621 tttcagagtg tgcctttccc tgctctccca ccccccgccc ctgccctgct aggtccctct
     4681 gtccccctcc tgctgctcac agatggtata aaagaggctc tttggctatt tgcatctggc
     4741 tttcgcttct tttccagatt gaaatattaa gtttatttta ttttgtacaa gcttcagatc
     4801 ccaacatcat ccaccagact tgatcttcac tttcccaaga gtgtgggggg tggggagcca
     4861 acagcaccgg ttccccagag tggggaggca agtaggcggc tgccatggta caggcgccat
     4921 ttggaattac tgacttctaa gattaataaa gtaatttcaa cttttc
//
