LOCUS       NM_001169136            1623 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus tubulin tyrosine ligase like 2 (Ttll2), mRNA.
ACCESSION   NM_001169136 XM_001070106 XM_217869
VERSION     NM_001169136.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            On or before Dec 18, 2009 this sequence version replaced
            XM_001070106.1, XM_217869.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.883.1,
                                           SRR26360181.1911449.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                JAXUCZ010000001.1  55517659-55517733   c
            76-1623             JAXUCZ010000001.1  55515955-55517502   c
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1623
                     /gene="Ttll2"
                     /note="tubulin tyrosine ligase like 2"
                     /db_xref="GeneID:292311"
                     /db_xref="RGD:1305200"
     CDS             1..1623
                     /gene="Ttll2"
                     /note="tubulin tyrosine ligase-like family, member 2"
                     /codon_start=1
                     /product="probable tubulin polyglutamylase TTLL2"
                     /protein_id="NP_001162607.1"
                     /db_xref="GeneID:292311"
                     /db_xref="RGD:1305200"
                     /translation="MNGLQTLGDVTAEIFRLSPEGNTVQKRQRLRMEDEAPGAALKPL
                     VFRVDESTPGVVQSVLLERGWDKFDEQCQDVEDWNLYWRSSSFRMAEYVNIKPWQRLN
                     HHPGTTSLTRKDCLAKHLAHMRRLYGESIYEFTPLTFIMPSDYTKFVAKYFKEKQDLG
                     TKPSYWICKPAKLSQGRGIIIFSDIRDLMFKDAYVVQKYICNPLLVGRYKCDLRIYVC
                     VTGFKPLTIYMYQEGLVRFATEKFDLSNLEDYYSHLTNSSINKLGASYEKIKEVVGQG
                     CKWTLSRFFSYLRNWDVDDLLLRRKINHMVILTVLAMAPSVPVANNCFELFGFDILID
                     DNLKPWLLEVNYSPALSLECSTDVSVKRSLVHDIIELLYLNGLRSEEKKCGRTSQGNA
                     MVSQARRSQQKLCAAPAPPSYASLIQFATCSKRSPAAQHMCPKHTRTSQLREMLCRQN
                     KLLTREAAKSKPRLKAWHSPRKMLSLCASQSLPRKTKGPTGILPEAGNTPNNHAGNFV
                     LIFPFNKATFSASRNGLNVKRIIQELQKLMNK"
     exon            1..75
                     /gene="Ttll2"
                     /inference="alignment:Splign:2.1.0"
     exon            76..1623
                     /gene="Ttll2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaatggtc tgcagacttt gggtgatgtg actgcagaga tttttagatt gtccccagag
       61 ggaaatactg tacagaaaag acagcgtttg aggatggagg atgaagcccc gggggccgcc
      121 ttgaagccgc tggtgttccg agtggacgag agcacacctg gggttgtaca gagtgtcctc
      181 ctggagcgtg ggtgggacaa atttgacgag caatgtcagg atgtggagga ctggaatctg
      241 tactggagat cgtcctcctt ccggatggca gagtatgtga atatcaagcc ctggcagagg
      301 ctcaaccatc acccagggac aaccagtctc accaggaagg actgcctggc caaacacctg
      361 gcacacatga ggaggctcta cggtgagtcg atctatgagt tcacaccctt gacgttcatc
      421 atgcccagtg actacaccaa gtttgtggcc aagtacttca aggagaagca ggacttgggt
      481 accaagccaa gctactggat ctgcaagcca gcaaagctgt cccaagggag ggggataatc
      541 attttcagtg acatccggga cctcatgttc aaggacgcgt atgtagtaca gaagtacatt
      601 tgtaacccct tgctcgtggg taggtacaag tgcgacctcc gcatctatgt ctgcgtcact
      661 ggcttcaagc ctttgaccat ttacatgtac caggaagggc tggtgcggtt tgccacggag
      721 aagtttgacc tcagtaattt ggaagattat tattcccatt tgaccaacag cagcatcaac
      781 aaattggggg cctcgtatga gaaaatcaaa gaggtggtgg gtcaaggctg caagtggacc
      841 ctcagcaggt tcttctcgta ccttcggaac tgggatgtgg acgacctgct gttgaggcgg
      901 aagatcaacc acatggtgat tctcactgtc ctggccatgg ctccatcagt ccccgttgcc
      961 aacaactgct tcgagctttt tgggtttgac atcctcattg atgacaacct gaagccgtgg
     1021 ctcttggaag tcaactacag ccctgctttg agcttggagt gttccacgga cgtctctgtc
     1081 aagagaagcc tcgtccatga tattattgag ctgttatact taaacggcct caggagtgag
     1141 gagaaaaagt gtgggagaac ttctcaggga aacgccatgg tctcccaggc caggagaagt
     1201 cagcaaaagc tctgtgctgc ccctgctccc ccttcttatg cgtctctcat acagtttgca
     1261 acgtgcagta aaagaagccc agctgcccag cacatgtgtc ccaagcacac tcgaacctcc
     1321 cagctcagag agatgctgtg caggcagaac aaacttctga caagagaggc agccaaaagc
     1381 aagccaaggc tcaaggcttg gcattcgcct cgaaagatgc tctccctatg tgcgtctcag
     1441 tcactgcccc gtaagacgaa gggacccacg ggcatcctcc cggaagctgg aaacacacca
     1501 aacaaccatg cgggcaactt tgttcttatc ttccctttca acaaggctac ttttagtgcc
     1561 tccagaaatg ggttaaatgt caaaagaata attcaagagc tccagaaact aatgaataaa
     1621 taa
//
