LOCUS       NM_001134962            3394 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus tubulin tyrosine ligase like 13 (Ttll13), mRNA.
ACCESSION   NM_001134962 XR_006329 XR_008304
VERSION     NM_001134962.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3394)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3394)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC169015.1.
            
            On or before Sep 15, 2008 this sequence version replaced
            XR_006329.1, XR_008304.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169015.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation, longest
                                                protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3394
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q31"
     gene            1..3394
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /note="tubulin tyrosine ligase like 13"
                     /db_xref="GeneID:308762"
                     /db_xref="RGD:1310399"
     exon            1..397
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            398..665
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     CDS             409..2886
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /note="tubulin tyrosine ligase-like family, member 13"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL13"
                     /protein_id="NP_001128434.1"
                     /db_xref="GeneID:308762"
                     /db_xref="RGD:1310399"
                     /translation="MEPNACKTSESEEDDIEEEESEEECVREESTTPNSSQQALGKAD
                     YKEFENGVALSVVAKNIPKKILSTTDTDDLEVGRRKRKRKRRPLAINLTNCKYESVRR
                     AAQMCGLKEVGEDEEWTVYWTDCSVSLERVMDMKRFQKINHFPGMTEICRKDLLARNL
                     NRMQKLYPTEYNIFPRTWCLPADYGDFQAYGRQRKTRTYICKPDSGCQGRGIFITRTP
                     KEIKPGEHMICQQYITKPFLIDGFKFDMRIYVLITSCDPLRIFMYEEGLARFATMPYV
                     EPSHNNLEEVCMHLTNYAINKHNENFVRDDAVGSKRKLSTLNAWLREHSHDPRELWGD
                     IEDIIIKTIISAHSVLRHNYRTCFPQYLCGGTCACFEILGFDILLDHKLKPWLLEVNH
                     SPSFTTDSRLDREVKDALLCDAMNLINLRGCDKKKVIEEEKRRVKERLFPCHQQPREA
                     RREQLESSQAAMHDQELYEDSHLGGYRRIYPGPDSEKYAPFFKHNGSLFQETAASKAR
                     EECARQQLEEIRLKQEQQENPGTKKRKENKEQNQGESAGEKSRSRVATRVLATNLAYR
                     NRNQEKELLPVQLDTMQPQDIVEEEELERMKLLLQRENLIRSLGIVEQLTRMLYPSHR
                     SHRKLHEYRPRFHQDGLSSQELQPVNLVPLVFLRGAASEHIPPHFLQPLRPHELIPRI
                     LGPLSSMNPAIAQHSRYHLQPKNFNWIGDSAATGPCSLSVKKSGRHYFSSSRVRLTSQ
                     GQASRRLEAINRALSGSVPPTLTPKQGYLLQPERQENGSWTECCNLPCMVNSEHRGTK
                     AGDLTLCPASAPVLQHSSPLLNIIQHR"
     exon            666..706
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            707..825
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            826..956
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1113
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1257
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1343
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            1344..1575
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            1576..1760
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            1761..1946
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            1947..2127
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            2128..2307
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            2308..2626
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
     exon            2627..3367
                     /gene="Ttll13"
                     /gene_synonym="RGD1310399"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagcgaacga gcggcggcca tgagcgacca gctgagtcca gccccaggcc gctaggggca
       61 gctccagcag cccctgagct ctcctcaaaa cctcgggtgg gcagtgtctg ccgtgggttt
      121 cctttcctct gttgtaaccc aaagagtctt agctatcaaa agtccgaccc caacgcgttc
      181 acatagagaa acggagttct gccttaggga aatcaccggt ccgataacct ttgtttttca
      241 gctgtatttt aaagtaaaga cttctctcgt tttgtcagcc accactcttc cccttcagga
      301 aacaaaacag ccgcggtggt ggttcccgcc agttctattc tgcatgcact gcagggtgtt
      361 gtatgtccgg agagatcctg gatgatggtt tcttttaaat ctgagaggat ggagcccaat
      421 gcgtgtaaga ccagtgaatc tgaggaagat gatattgagg aagaagaatc tgaggaagag
      481 tgtgttagag aggaatctac cacccctaac tctagccagc aggcacttgg aaaggctgac
      541 tataaagaat ttgagaatgg ggttgcttta tctgttgtag ccaagaatat tccaaagaaa
      601 atattaagta caacagacac agatgatttg gaagttggga ggaggaaaag aaagcggaaa
      661 cgaagacccc tggccatcaa cctgaccaac tgcaagtacg agagtgtgcg ccgggcagcc
      721 caaatgtgtg gccttaagga agtaggagag gatgaagagt ggactgtgta ctggacggac
      781 tgttctgtct cactggaacg agtcatggat atgaagaggt ttcagaaaat caaccacttc
      841 cctggcatga ccgaaatctg ccgcaaagat ctgctggctc ggaacctcaa ccgcatgcag
      901 aagctctacc ccactgagta caacatcttc ccacgcacct ggtgcctccc tgcagactat
      961 ggggacttcc aggcctacgg tcgtcagcgg aaaacccgca cttatatctg caagccagat
     1021 agcggctgtc aggggcgtgg catctttatc accagaaccc ccaaggaaat caagccagga
     1081 gagcatatga tctgccagca gtacatcacc aagcccttcc tcattgatgg cttcaagttt
     1141 gacatgagaa tctatgttct gatcacttcc tgtgaccctc tccgtatctt catgtacgag
     1201 gaaggcctgg cccgttttgc taccatgccg tatgtggaac ctagccataa caacctggag
     1261 gaggtctgca tgcacctgac caactatgcc atcaataaac acaatgagaa ttttgtccga
     1321 gatgatgctg tgggcagtaa gaggaagctg tcgacactca atgcctggct gcgagagcac
     1381 agccatgatc cccgagagct gtggggggac atcgaggaca tcatcatcaa aaccatcatc
     1441 tcagcccact ctgtgcttcg ccacaactac cgaacctgtt tcccccaata tctgtgtgga
     1501 ggtacatgcg cctgctttga gatcctgggg tttgacatct tactggacca caagctcaag
     1561 ccctggcttc tagaggtaaa ccactcccca agcttcacca cagactcccg cctggatcga
     1621 gaggtgaaag acgcacttct ctgtgatgct atgaacctta tcaacctccg gggctgtgac
     1681 aaaaagaagg tgattgaaga agagaaacgt cgagtcaaag agaggctttt tccgtgccac
     1741 caacagccac gagaagccag gcgagaacag cttgagtcgt cccaggctgc catgcatgac
     1801 caggaacttt atgaagattc ccacctaggg ggataccggc gaatctaccc agggcctgac
     1861 tcagagaaat atgcaccttt cttcaagcac aatggctccc tcttccagga gactgctgcc
     1921 tccaaggcca gggaggagtg tgccaggcag caactggaag agattcgcct aaagcaggaa
     1981 cagcaggaga acccaggcac caagaagcgc aaggagaaca aggagcagaa ccagggagaa
     2041 tcagctgggg agaaaagccg atccagagta gctacacggg tccttgccac caacctggct
     2101 tacaggaacc ggaaccagga gaaagagctg ctaccagtac aactggacac tatgcagcct
     2161 caggacattg tggaagagga agagcttgag cgaatgaagc tcctgctaca aagagagaat
     2221 ctcatccgaa gcctgggcat tgtagagcag ctcactcgca tgctgtaccc tagccaccgg
     2281 agccacagaa agcttcatga gtatcggcct agatttcacc aggacgggct gagcagtcaa
     2341 gaactgcaac ctgtgaattt ggtcccattg gtgttcctga gaggggctgc ctcagagcat
     2401 atccctcctc atttcctgca accacttcgg ccccacgaat tgatccccag gatcttaggg
     2461 ccactatcaa gcatgaatcc cgcaattgca cagcactctc gctaccatct tcagcccaag
     2521 aacttcaact ggataggaga ttcagcagcc actggcccct gttcattgtc agtgaagaaa
     2581 tctgggaggc actatttttc cagctctaga gtcaggctca ctagccaagg ccaagccagc
     2641 agaaggctag aagccataaa cagagccctg tcaggatcag tgccacccac tttaacccca
     2701 aagcagggtt atcttctgca acccgaaaga caggaaaatg gctcatggac tgaatgctgt
     2761 aacttgccct gcatggtaaa ctctgaacac agaggaacca aggctgggga tctcacccta
     2821 tgccctgcct ctgcaccagt actgcagcat tccagcccac tcctcaacat catccaacac
     2881 aggtaaaaga aggaaagccc agcaatcaac caaagagtaa atggtcttca atctttgcta
     2941 attgaaagac tgccatcaag ttcccgtttg aaaagctctg gccaggacct ttgtttgcaa
     3001 aaggcaaaac acggagacac cgagaattct tcaacattct aagattcttt ggggatcggt
     3061 aaagatgaag agctaaggcc agcttgtttg catctctgct catcaagcct tagactgagt
     3121 ttatccctaa gcgatgcgtc tgaaccctgg gtgtggcttg gggctggagg tcactgggca
     3181 acaaggagtt cctttcccag aggagtcaaa agcccaaggt atggtgtagt cgccatcaga
     3241 agatggatga gggttcgccc ttcctgccac agtggcagaa tcaggcaggc ctgggcagcc
     3301 tgtgccagag gggcggctct gggcaaccga acccgtcttt ttattaaagt ttatgtcgtt
     3361 ttccaggaaa aaaaaaaaaa aaaaaaaaaa aaaa
//
