LOCUS       XM_017592136            3415 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin tyrosine ligase like11
            (Ttll11), transcript variant X1, mRNA.
ACCESSION   XM_017592136
VERSION     XM_017592136.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017592136.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017592136.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3415
                     /gene="Ttll11"
                     /note="tubulin tyrosine ligase like11; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:689746"
                     /db_xref="RGD:1588742"
     CDS             271..2424
                     /gene="Ttll11"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL11 isoform X1"
                     /protein_id="XP_017447625.2"
                     /db_xref="GeneID:689746"
                     /db_xref="RGD:1588742"
                     /translation="MWRSSLEQESAAGWETDETAAADSLEAEEGEQLGVDAGAAGEPE
                     RPEREEQPKAVGPTLTPTRRRATEEGDVRVVRRLPPALPQDSPRPVARALSHLVQARG
                     RNRGYRRNADSVRPVTVDSSKARTSLDALKISLRQLRWKEFPFGRRLPCDIYWHGVSF
                     RDNDILSGQVNKFPGMTEMVRKITLSRALRIMQNLFPEEYNFYPRSWILPEEFQLFVA
                     QVQTVKDNDPTWRPTFIVKPDSGCQGDGIYLIKDPCDCRLTGTLHNRPAVVQEYIRKP
                     LLIDKLKFDIRLYVLLKSLDPLEIYIAKDGLSRFCTEPYQEPNPQNLHHVFMHLTNYS
                     LNIHSGKFVHSDSASTGSKRTFSSILCRLSSKGVDIKKVWSDIISLVIKTVIALTPEL
                     KVFYQSDIPTGRPGPTCFQILGFDILLMKNLKPMLLEVNANPSMRIEHEYELSPGVFE
                     NIPSLVDEEVKVAVIRDTLRLMDPMKKKREIHFPDICMDRKHRIPPVSDRMSSWKRKG
                     SSLPIVRSQQMDKPFAAKEDLNCDLAGDFEPNPEAHLPSICLKQVFPKYAKQFNYLRL
                     VDRMANLFIRFLGIKGTMKLGPTGFRTFIRNCKLSSSSLSMAAVDILYIDITRRWNSV
                     ALDQRDTGMCLQAFVEAFFFLAQRKFKLQPLHEQVASLIDLCEYHLSLLDEKRLLCHR
                     GRSHQRNTPQMNRTTHSAAGSSAPRVIGASKLSHS"
ORIGIN      
        1 gccacctctg tgacaggcct ggtcacgtgg gcgcgctcgc ttgtgaggtc gccgggcccc
       61 ggcaggcgat tgtcccttgc cgggccccgt cccgaggcgg cgactatccc tgtcaaccgg
      121 agcctgagag atcatggcaa cgggctcggg cggggagcgc gtggcggcgg cggcggcggt
      181 agcggcggcg gcagtttggt cgcgggccgg gacggcggag cggcggcgga ggcggcggtg
      241 gctgtggcgc cggcaccggc cctgagcgtc atgtggcgca gcagcctcga gcaggagtca
      301 gcggccgggt gggagacgga cgagacggcg gcggccgatt cgctagaggc ggaggaggga
      361 gagcagctgg gtgtagacgc tggcgcggcc ggggagcccg agcgcccgga gcgggaggag
      421 cagcccaagg ccgtgggccc gaccctgacc ccgacgcgac gccgcgcgac cgaggaagga
      481 gatgtccgcg tcgtccgccg gctgccgccc gcgctgcccc aggactcgcc gaggccggtg
      541 gcacgggccc tgagccatct cgtgcaggcc cggggccgga accggggcta tcggcggaac
      601 gcggactcag tgcggccggt caccgtggac agctccaagg ctcgcacttc cctggacgcg
      661 ctgaagatca gccttcgcca gctcaggtgg aaggagttcc catttggccg gcgcttgcct
      721 tgtgacatct actggcatgg agtttcattt cgcgacaatg acatactctc cggtcaagtg
      781 aacaaatttc caggcatgac ggagatggtg cgtaaaatca ccttgagcag agctctgagg
      841 atcatgcaga acctgtttcc cgaggagtac aacttctacc ctcgctcgtg gatcctgcct
      901 gaggagttcc agctctttgt tgctcaggtc caaacggtga aagacaatga ccccacctgg
      961 aggcccactt ttattgtgaa accggacagt ggttgtcagg gcgacggaat ctacctcatt
     1021 aaagatccct gtgactgccg cctgactggg accctgcata acaggccggc agtagtccag
     1081 gagtacatcc gcaagcctct ccttatcgac aaactcaagt tcgacatccg tctgtatgtc
     1141 ctgttgaagt ccttggaccc cttagagatc tatatagcca aagatggact ctctaggttt
     1201 tgtacagagc catatcaaga acccaacccc cagaacctgc accatgtctt catgcacttg
     1261 accaactact ccctgaacat ccacagcggc aagttcgtcc actcagacag cgccagcaca
     1321 ggcagcaaga ggactttctc tagcattctc tgtagactgt cttccaaagg tgtggacatc
     1381 aagaaggtct ggtctgatat catctcctta gttattaaga ctgtcatcgc cctgacccca
     1441 gagctcaaag ttttctacca gtcagacatc ccaacaggga ggccggggcc cacctgcttc
     1501 cagattctag gctttgacat tcttctgatg aaaaacctga agcccatgct acttgaagtg
     1561 aatgcaaacc ccagcatgag gattgagcat gagtacgaac tttctccagg agtgtttgaa
     1621 aatatcccca gcctggtgga cgaagaagtg aaggtggccg tgatcagaga cacgctgcgc
     1681 ctcatggacc cgatgaagaa gaaaagggag atccactttc cagatatctg tatggacaga
     1741 aaacacagaa tccctccagt ttctgacaga atgtcttcat ggaagcgtaa gggttcctcg
     1801 cttcccatag tcaggtctca gcagatggat aagcctttcg ctgcaaagga agatctgaac
     1861 tgtgacctgg ccggagactt cgagcccaac cctgaagccc atttgccctc catttgcctc
     1921 aagcaggtgt tccccaagta tgccaagcag ttcaattacc tgcgcctggt agacaggatg
     1981 gccaatttgt tcatccgatt cctgggaatc aaggggacaa tgaagttggg accaactggc
     2041 tttcggacct tcataaggaa ctgcaagctg agcagcagca gcctgtccat ggcggcggtg
     2101 gacatcctct acatcgacat caccaggagg tggaactcgg tggctctgga ccagcgggac
     2161 acagggatgt gtctgcaggc attcgttgaa gctttcttct tcttggccca gaggaagttc
     2221 aagctgcaac ctctccatga gcaggtggcg tccttgattg acctgtgtga ataccacctg
     2281 tccctgctgg atgaaaaacg cttgttgtgc catcggggcc ggtcccacca aagaaacacc
     2341 cctcagatga accgcacaac ccattcagct gcgggcagct ctgcaccccg agtgatcggg
     2401 gctagcaaac tctctcactc ctgacacgct ctgtcctgac gtcctggaag aaggtgtgcc
     2461 ctcgggggct gaggacccca ggctcccccc acctgtcggg agccactagg gttccagctg
     2521 caatcacccg tgcgtcctct ctgtgtcctg tagggctctt gcctcacacg gccaatcctt
     2581 gcccactccc cacccagcac ctcgtggtga cctcaccctg tttgggaatc atcagtggac
     2641 atatgacatc caagatgtga cagatggcac ctactattct gggctcctgg gaaacaccaa
     2701 ctggggcagt ttctgctgtg cttggggccg caggggaatg gagggagggt gaaggacaga
     2761 ccatcctaag cagagatctg tgggcgtgga gaacagtcac acggtggcct gctgggccct
     2821 gagagcctgc tggtcagagc ttagcatcat cgaatgtctt tccttctgcc cattccccaa
     2881 aacgaagttg aaatatgaag atggcggaca cccccccccc ccgatcatgt gctacacagg
     2941 tgtcctttac agactgacct catttgtttg ttaacctacc tgttgctgca atgtttgagt
     3001 tattactaat aaagaaatac ttaagaaata acacagtagg gcttcttcag tctccccgtc
     3061 caggttccag gggacccctt caaagttggg gcactgaccc aatggcgaag agccactgtg
     3121 tacccagcac tgtgctgtct gccctgagtg aggggagggg cttcagaggg gagaatggaa
     3181 ggcccccaat gacaagcagg agtgtgtgta gagcaggtgt ggcctagacc aaaacaacca
     3241 gtgttcttga atgtgcactc tgaggggcag aggtggaagg cctcggttcc tgctcctcag
     3301 gaaccaagtg ggtctcacac aagtcccaag tgagaagtgt gtgggtacat tctttaacca
     3361 gcctcgagct gtacagctgt agaaggctat taaataaagc tttgacttga cacca
//
