LOCUS       NM_001170533            2379 bp    mRNA    linear   ROD 06-OCT-2024
DEFINITION  Rattus norvegicus tubulin tyrosine ligase like 10 (Ttll10),
            transcript variant 1, mRNA.
ACCESSION   NM_001170533
VERSION     NM_001170533.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Rogowski,K., Juge,F., van Dijk,J., Wloga,D., Strub,J.M.,
            Levilliers,N., Thomas,D., Bre,M.H., Van Dorsselaer,A., Gaertig,J.
            and Janke,C.
  TITLE     Evolutionary divergence of enzymatic mechanisms for
            posttranslational polyglycylation
  JOURNAL   Cell 137 (6), 1076-1087 (2009)
   PUBMED   19524510
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC097417.1, CK653520.1 and BC083833.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3                 BC097417.1         2-4
            4-586               CK653520.1         1-583
            587-2379            BC083833.1         4-1796
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2379
                     /gene="Ttll10"
                     /note="tubulin tyrosine ligase like 10"
                     /db_xref="GeneID:298692"
                     /db_xref="RGD:1560839"
     exon            1..100
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..2282
                     /gene="Ttll10"
                     /EC_number="6.-.-.-"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein polyglycylase TTLL10; tubulin--tyrosine
                     ligase-like protein 10; tubulin tyrosine ligase-like
                     family, member 10"
                     /codon_start=1
                     /product="protein polyglycylase TTLL10 isoform 1"
                     /protein_id="NP_001164004.1"
                     /db_xref="GeneID:298692"
                     /db_xref="RGD:1560839"
                     /translation="MFKRISCSYRGVISCQSLYLNSRHRGHTHRGQDSLGRRKLTRQR
                     RDAKMPLHPPARRPHGHRRNGSEAQTEATTQDTGRLSCPRRVGAAVCPIQGLGHRAAR
                     RPRRGVGTTSASRAPRPGALMPATRNRPRFIHYRVQPPRTHVSFKRPKRSRTHQSHTK
                     VPGWTHEKRMGSSVEEGLRPELSQLEQDADNLGEEEAARLPVTSLNGLLMEGDRHPNP
                     GQGPFFYIGGTNGASIISNYCESKGWQRTQDSRCEDYKLKWCEIKCRDNYCSFREGQQ
                     LLFQLPNNKLLTTKIGLLSALREHARTLSKARLMPSTQAKVLKMDEFFPETYRLDIRD
                     ERQAFFTLFDETQMWICKPTASNQGKGIFLIRSQEEAAALQAKTQSIEDDPIYRKMPF
                     RAPQARVVQRYVQNPLLLDGKKFDVRSYMLIACAMPYMVFFGHGYARLTLSLYNPHSS
                     DLSGHLTNQFMQKKSPLYMLLKDSTVWSMEHLNRYINDKFRKSKGLPRDWVFTTFTKR
                     MQQIMSHCFLAVKSKLECKLGYFDLIGCDFLIDENFKVWLLEMNSNPALHTNCEVLKE
                     VIPGVVMETLDLALETCQKSLHSQKMLPLQSQRRFVLLYNGETTDLWPRLGSSRPPIR
                     LPYANSNHARSTCEISSSSLTSTRVTIADRPAARKSMSSRTAPICASRKSRLSDSGGV
                     SIEESETSVCSGLPEGSRDAAREPSLGPTEEEREEEQRSTSHRGS"
     exon            101..163
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            164..585
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            586..666
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            667..799
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            800..918
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1045
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            1046..1131
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1303
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            1304..1475
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..1616
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            1617..1733
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            1734..1827
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
     exon            1828..2356
                     /gene="Ttll10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagaactgac cccccagaag ggccacctga gatccacaga gaacgcatcc ccagacagtg
       61 agcgctgctt gggaggcacc agcccttcaa aaaaaaaaat gtttaaacgc atctcctgct
      121 cgtaccgggg tgtgatttcc tgccagtctt tatatctgaa cagcagacac agaggccaca
      181 ctcatcgagg ccaggacagt cttggccgaa gaaaactcac taggcagagg cgggatgcaa
      241 agatgccctt acacccaccg gccagaaggc ctcacggcca tcgcagaaat ggaagtgagg
      301 cacaaacaga agctacaacc caggatacag ggaggctttc ttgcccaaga agggtgggtg
      361 cagcggtctg tcccatccaa gggctgggac atcgggctgc tcgaagaccc cgaaggggtg
      421 tagggactac atctgcctca agggctccac gtcctggtgc ccttatgcct gcaacgcgca
      481 accgtccaag attcatccac taccgggttc aaccccctcg gacccatgtc agcttcaaga
      541 gacccaaacg gtccaggacc catcaatccc acactaaggt gccaggctgg acccatgaga
      601 aacggatggg gagcagtgtc gaggaagggc tccggcctga gctaagtcag ctggaacaag
      661 atgcagacaa cctaggggaa gaagaagctg ccaggctccc ggtgacttcc ctgaatgggc
      721 tcctgatgga aggagacagg catcccaatc ctggtcaggg ccctttcttc tacatcggag
      781 gcaccaatgg agcgtcaata atcagcaact actgtgagag caagggctgg caacgcactc
      841 aggacagtcg ctgtgaggac tacaagctaa agtggtgtga gatcaagtgc agggacaact
      901 actgcagctt ccgggaaggc cagcagttgc tgttccagct tcccaacaac aagctgctta
      961 ctaccaagat cgggttgctc agtgctctgc gggagcatgc acgcactttg agcaaagcca
     1021 ggctaatgcc cagtacccag gccaaggtcc tgaaaatgga tgagtttttc ccagagacct
     1081 atcggctgga catcagggat gagagacagg ctttcttcac tctgtttgat gaaacccaga
     1141 tgtggatctg caagcctaca gcctccaacc agggaaaggg catctttctg atcaggagcc
     1201 aagaggaggc tgctgccctg caggccaaga cccagagcat tgaggatgac cccatctacc
     1261 gcaagatgcc cttccgtgca ccccaggcgc gagtggtgca gagatatgtc cagaacccgc
     1321 tgctgctaga tgggaagaag tttgatgtgc gctcctacat gctcattgcc tgcgccatgc
     1381 cctacatggt cttttttggc catggctatg cccgcctcac cctcagcctg tataaccctc
     1441 attccagtga cctcagtggt catttgacca atcagttcat gcagaagaag agtcccctgt
     1501 acatgctgct gaaagacagc accgtgtgga gcatggagca cctcaaccga tacatcaatg
     1561 acaaatttag gaagtccaag ggcctcccca gagattgggt cttcaccacc ttcacgaagc
     1621 ggatgcagca gatcatgtcc cactgcttcc tggctgtcaa gtccaagctg gagtgcaagc
     1681 tgggttactt tgacctcatt ggctgtgatt tcctgattga tgaaaacttc aaggtgtggc
     1741 tgctggagat gaactccaac cctgccctac ataccaattg tgaagtcctg aaggaggtga
     1801 ttcctggagt ggttatggag accttggacc tggcgcttga gacctgccaa aagagtttgc
     1861 acagtcagaa gatgctgcct ctgcagtcac agcgtcgctt tgtgctcctt tacaatggcg
     1921 agactacaga cttgtggccg cgcttgggga gctcacgccc acctatccgc ttgccttatg
     1981 ctaactctaa ccatgcccgg tccacctgcg aaatctcatc ctcttcgctt acctcaacac
     2041 gtgtcactat cgcagaccgg cctgcggcac gcaagtcgat gtcttccaga acagctccca
     2101 tttgcgcctc ccgcaaatcg cggctgtctg actcgggcgg tgtctccata gaggagtctg
     2161 agacctctgt ttgttctggg ctcccggaag gcagcaggga cgcagcccgg gaaccctccc
     2221 tggggccaac cgaggaagag cgagaggagg aacagaggag cacgagccat cgaggctcct
     2281 agcagccaca agcatccagt ggccttgcgc tttgccatgc cctctccagg acctataaaa
     2341 gctactttgt gacaaaaaaa aaaaaaaaaa aaaaaaaaa
//
