LOCUS       NM_001106454            4627 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus transcription termination factor 2 (Ttf2), mRNA.
ACCESSION   NM_001106454 XM_001066287 XM_215670
VERSION     NM_001106454.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4627)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Oct 10, 2014 this sequence version replaced NM_001106454.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            Celera genomic sequence because of problems with the reference
            genome in this region. The genomic coordinates used for the
            transcript record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1086760.1,
                                           SRR26643293.13611.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-44                JAXUCZ010000002.1  191086263-191086306 c
            45-147              JAXUCZ010000002.1  191086076-191086178 c
            148-234             JAXUCZ010000002.1  191084008-191084094 c
            235-301             JAXUCZ010000002.1  191080835-191080901 c
            302-1228            JAXUCZ010000002.1  191079265-191080191 c
            1229-1343           JAXUCZ010000002.1  191078356-191078470 c
            1344-1529           JAXUCZ010000002.1  191077972-191078157 c
            1530-1657           JAXUCZ010000002.1  191075675-191075802 c
            1658-1739           JAXUCZ010000002.1  191074289-191074370 c
            1740-1859           JAXUCZ010000002.1  191072742-191072861 c
            1860-2010           JAXUCZ010000002.1  191070768-191070918 c
            2011-2116           JAXUCZ010000002.1  191068417-191068522 c
            2117-2298           JAXUCZ010000002.1  191066699-191066880 c
            2299-2452           JAXUCZ010000002.1  191065851-191066004 c
            2453-2544           JAXUCZ010000002.1  191065502-191065593 c
            2545-2627           JAXUCZ010000002.1  191064736-191064818 c
            2628-2761           JAXUCZ010000002.1  191064050-191064183 c
            2762-2932           JAXUCZ010000002.1  191063251-191063421 c
            2933-2991           JAXUCZ010000002.1  191061734-191061792 c
            2992-3142           JAXUCZ010000002.1  191060530-191060680 c
            3143-3225           JAXUCZ010000002.1  191059401-191059483 c
            3226-3300           JAXUCZ010000002.1  191057910-191057984 c
            3301-4627           JAXUCZ010000002.1  191054966-191056292 c
FEATURES             Location/Qualifiers
     source          1..4627
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..4627
                     /gene="Ttf2"
                     /note="transcription termination factor 2"
                     /db_xref="GeneID:295324"
                     /db_xref="RGD:1309145"
     exon            1..44
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..3445
                     /gene="Ttf2"
                     /note="transcription termination factor, RNA polymerase
                     II"
                     /codon_start=1
                     /product="transcription termination factor 2"
                     /protein_id="NP_001099924.2"
                     /db_xref="GeneID:295324"
                     /db_xref="RGD:1309145"
                     /translation="MEVIKCPEHGAVCFLKTGVRDGPNKGKSFYVCRTNTCGFVQATD
                     IPVSHCLLHEEFVVELQGLFLPQGKKEWRLFFRCARTKAEGKRWCGDVPWQDPNPKGH
                     SVTCKPQLASESLPHPPSQPRNPFRVLNKNQKTLEWKQFVEGEGEIKTADKKLRENRE
                     QLLDQKKEQKPKSKCRMEKDPSSDLVVTRQSGGDGEEQEEKTKFRPKTKETEEMTSKQ
                     GHGEVLQGTSKVPQISESESQEIPNKPEALSEKETHLLLQSIPGQNPESKVQKEGHLI
                     REQLKNGDKTGADAHSAQASQTGLSQGSLQGPSKTWRPTPKARVAPGVCSGSVHHATS
                     SSDDSEDDGRPGSPLLFDLTIDSQKKGSLQHSDQSVQRQTAAASGVSKKGESSDLAAQ
                     RANLTTQLKQKKGTLAAVNIQALPDKGEKLLKQIQALEDALNALALSPEQGTRENCSS
                     QEPEQSKVTETAAAGPLHLVPPQPLPRPHIQPAASLGLKASRQETPEGASQCSGGHTN
                     EHRLYNVWKITSEAIDELHRSLESCPGKTAVAEDPAGLKVPLLLHQKQALAWLLWRES
                     QKPQGGILADDMGLGKTLTMIALILTKKNQQKSKEKDRSLPVMWLSKNDSSVFTSTGT
                     LIVCPASLIHHWKNEIEKRVNSNKLRIYLYHGPNRIQHAKVLSTYDIVITTYSLLAKE
                     IPTAKHEGEVPGAKLSVEGISAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQA
                     RWAVTGTPIQNNLLDMYSLMKFLRCSPFDEFSLWKSQVDNGSMKGGERLSILTKSLLL
                     RRTKDQLDSTGKPLVPLPARSCQLHRLKLSEDERAVYDVFLARSRSALQSYLKRQEGR
                     GSHPGRSPENPFSRVAQEFGSGVPQCSTAADSRRPSTVHVLSQLLRLRQCCCHLSLLK
                     SVLDPKELESEGLVLSLEEQLSALTLSKVDVSEPSPTVSLNGTCFKVELFDDIRRSTK
                     VSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLRKNRLTYATIDGSVNPKQRMD
                     LVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQE
                     KDVVMHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGGPVTKLTLADLKILFGI"
     exon            45..147
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            148..234
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            235..301
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            302..1228
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1343
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1344..1529
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1530..1657
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1658..1739
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1740..1859
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1860..2010
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2011..2116
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2117..2298
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2299..2452
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2453..2544
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2545..2627
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2628..2761
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2762..2932
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2933..2991
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2992..3142
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            3143..3225
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            3226..3300
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
     exon            3301..4627
                     /gene="Ttf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttcctggc tgcgttatgg aggtgattaa gtgtccggag cacggggccg tctgcttctt
       61 aaagaccggc gtccgcgatg gcccgaacaa gggaaagagc ttctacgtat gccggacgaa
      121 cacatgcggc ttcgtgcagg ccaccgatat tcctgtttct cattgtttat tgcatgagga
      181 gtttgtggta gagcttcagg gtttgtttct accacagggc aagaaagaat ggaggttgtt
      241 cttccgatgt gctagaacca aggcggaggg gaagcgctgg tgtggtgatg tcccatggca
      301 ggatcctaat cctaaaggac actctgtaac ctgtaagcct cagctggcat cggagtcact
      361 gcctcaccct cccagccagc cgagaaaccc atttagggtg cttaacaaga atcagaaaac
      421 acttgagtgg aaacagtttg tggaaggaga aggtgagata aagacagccg ataagaagct
      481 gagagaaaac agagagcagc tcttggatca aaagaaagaa cagaagccca aatctaaatg
      541 caggatggag aaggacccct catctgacct ggtggtaact agacagtctg gaggtgacgg
      601 ggaagaacag gaggagaaaa caaagttccg gcccaaaact aaggaaactg aagaaatgac
      661 ttccaaacaa ggccatggag aggtgcttca gggaacatcc aaagttcctc agatatcaga
      721 gagtgagagt caagagatcc caaacaagcc agaagctctg agtgaaaagg aaacccatct
      781 tttgttgcag agtattcctg gtcagaaccc agaaagcaag gtccagaaag agggacacct
      841 catcagggag cagcttaaga acggggacaa aacaggagca gatgcccaca gtgcacaggc
      901 ctcccagaca gggctatctc aggggtctct ccaggggcct tccaagactt ggaggcctac
      961 tcccaaagca cgagtagcac ctggggtttg ttcaggatcc gtacaccatg ccacctccag
     1021 cagcgatgac agtgaagatg atggtaggcc agggtcccca cttctctttg acttgactat
     1081 agactcacag aagaagggga gccttcaaca ttctgaccag agtgtacaga gacagacagc
     1141 tgctgcttca ggtgtttcca agaagggaga atcatctgac ctggcagccc agcgtgcgaa
     1201 ccttacgaca cagctgaaac aaaagaaggg caccctggct gcagtgaaca tccaggctct
     1261 ccctgacaag ggagagaagt tgcttaagca aatccaggct ttggaggacg cactcaatgc
     1321 tctggctctc tcaccagagc aaggaactag ggagaactgc agctcccagg agccagagca
     1381 gagcaaggtc accgaaactg ctgctgctgg ccctctacac ttggtgcctc cccagcccct
     1441 tcccaggccc cacatccagc ctgcagcctc cctaggacta aaggccagcc gccaggagac
     1501 tcctgaggga gccagccagt gctcaggagg ccacacgaac gaacatcgtc tttataatgt
     1561 gtggaaaatc acgagtgaag ccattgacga gcttcatcgg tcactggagt cttgtcctgg
     1621 gaaaactgca gtagcagaag acccagctgg cttgaaggtc cccttgctac tgcaccagaa
     1681 gcaggcatta gcctggttac tgtggcggga aagtcagaag ccacaaggag ggatcctggc
     1741 ggatgatatg ggcttaggaa agactctgac aatgattgca ctcatcctaa ccaagaagaa
     1801 tcagcagaag agcaaggaga aggacagaag cctgcctgtg atgtggcttt ccaagaatga
     1861 ttcctctgtc tttacttcca ccggaacact aatcgtctgc cccgcttccc tgatccatca
     1921 ctggaagaat gaaatagaga aacgtgtgaa cagcaacaaa ctcagaatct atctctacca
     1981 cgggccaaac cggattcagc atgcgaaagt cctctctaca tacgacatcg tgattactac
     2041 ttatagcctt ctggccaagg agattcctac agcaaagcat gagggagagg tcccaggagc
     2101 aaagctcagt gtggagggta tctcagcacc tttgcttcag gtagtctggg cccgaatcat
     2161 tttggatgaa gctcataacg tgaagaaccc tcgagtacag acgtccattg ctgtgtgtaa
     2221 gctccaagcc caggcccggt gggctgtcac tggaaccccc attcagaaca acctgttgga
     2281 tatgtattca ctaatgaagt ttctccgctg ctccccattt gatgagttca gtctttggaa
     2341 gagtcaggtg gacaatgggt caatgaaagg aggggaacgg ttgagcattt taaccaagag
     2401 ccttttgctg aggagaacaa aagaccaact ggattccact ggtaaacctt tggtgcccct
     2461 ccctgcacgg agctgtcagc tgcaccgttt aaagctttct gaagatgagc gggctgttta
     2521 tgacgtcttt cttgcaaggt ccaggtcagc tctccagtcc tatctgaaga gacaagaagg
     2581 tagaggcagc catcctggaa ggagccctga gaatccattc agtagggtgg ctcaggagtt
     2641 cgggtctggt gtgccccagt gctccactgc agcggactca cggagaccca gcaccgtcca
     2701 tgtcctgtcc cagcttctcc ggcttcgcca gtgctgctgc catctttctc tgctgaagtc
     2761 ggtcctggac cccaaggaac tggagagcga aggccttgtc ctatccctgg aagaacagct
     2821 cagtgctctg accttgtcca aagtcgatgt ctcagagccg tcgcccaccg tcagccttaa
     2881 tggcacatgc ttcaaggtgg agctttttga tgacatacga aggagcacca aggtgtcttc
     2941 tctgctggca gaactggagg caatccaaaa aggcccaggg tcccaaaaga gtgtcattgt
     3001 ctctcagtgg accagcatgc tgcaggtggt agccctgcac ctcaggaaga accgactgac
     3061 gtatgccacc atcgatggct ctgtcaatcc caaacagaga atggacttgg tggaggcatt
     3121 taaccactcc cagggacctc aggtcatgct gatctccctc ttggctggcg gtgttggact
     3181 caatctgact ggaggaaacc accttttcct tcttgacatg cactggaatc cctcacttga
     3241 agaccaagct tgtgaccgga tttaccgagt agggcaggag aaggatgttg tcatgcacag
     3301 gtttgtctgt gaggggacag tggaagagaa gatcttacag ctccaagaga aaaagaaaga
     3361 tttggcaaaa caggttcttt caggatccgg aggacctgtc accaagctca cactggctga
     3421 cctcaagatc ctctttggca tttagcttcc tctgctggtg ctggtgtgta ccaggacctg
     3481 gagtggtgct ctttctgtga tcctggagcc ttagatctca ccttactcaa agtgaggctt
     3541 gttcctatgc caggaattga ggacaggtta ccatgttagc aaaccagtca gtcagtcagt
     3601 catgtctgtc acgtagcctg tgtactgtgt gccatagaaa ccaactggtt ctttcagaat
     3661 gaagcctgca tgttggtgca tcctataatc ctgctcttac aaagcaagaa gatggggagt
     3721 tttcagtttg gcctgttacc tactctttct cagaacaaat catgagtgct ttggaagcca
     3781 gccatgtagt ccttaagtcc ctgcactcaa gaggctgagt ggcgattgtg agttagagga
     3841 tagtttatgc tacagagtaa atttcaggcc agcctgggct acagaatgag accaggtctt
     3901 agaaaaacca aagccagtga aagctttggt gtgagatggt ctggggaggt gagtctggaa
     3961 gaactgtatg tgaagctttg gtgaagcctt ggtgtgaagc cccgctgtca tcgcgagctt
     4021 ggtggccagt gtctatagtg ctggcgcttt ggaggcagaa gcaagcaggt cttgagtcta
     4081 aggttggctg ggaacggtga gtgctttggc agccttaatg acacggtaag accctgtctg
     4141 tcagacagcc acagagccct gtgttgccat gcttggggct gatgacagac ctggtcttgt
     4201 taccttgtct accaaggctc tgtcctgttt ccctgctggg aggctgctcc ttgtaagcct
     4261 ccttgtgaac tgagaagagg gtagaccctg tatcaaccat tggctgcctg aatccaggca
     4321 ggtttagggt caagatattc cacatataaa cagatgttga gtattaatca tggtatcatc
     4381 tagcatctgt catttagcct gtgcatcatg gtttcattta tgtgtatctg catcaatgtg
     4441 actgtgtcag tttcatcact gtatcatttg gtatcacagt atttctatca taatatttgc
     4501 attatttaat gtttatgtcc attttagttg ccattggcat ttaatacagt tgtgtcattt
     4561 agtttctgcc attgtaccac attgtgttat cattggtata gtcttaataa acgccttcgg
     4621 cagtgca
//
