LOCUS       XM_006233882            4060 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription termination factor 1
            (Ttf1), transcript variant X1, mRNA.
ACCESSION   XM_006233882
VERSION     XM_006233882.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006233882.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006233882.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4060
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4060
                     /gene="Ttf1"
                     /note="transcription termination factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 28 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:499766"
                     /db_xref="RGD:1565673"
     CDS             35..2773
                     /gene="Ttf1"
                     /codon_start=1
                     /product="transcription termination factor 1 isoform X1"
                     /protein_id="XP_006233944.1"
                     /db_xref="GeneID:499766"
                     /db_xref="RGD:1565673"
                     /translation="MRSKTEVSTVFPPHNTSGLKDECYTISGMEGGKFKTHTATLHKK
                     KKWSSVSEKRLQKWPSQHLESEQPQVSVRKKRRRESQTPAQESLESEQPWKAKKKKKR
                     RRESQTPAQESLESEQTPMSMLGKRRRESQTPAQENLESEQPWKAKKKKRRREYQTPA
                     EESLESEQPWKAKRKKKKEKESQQLTSSLLKNSETFHKAKKTTAAHKKKKNSVWEVDM
                     ETGIILVDKENMENLLETSRKDVDIVYVDMSKGQRSAKVNETEELPMAETQKRDCREL
                     HSDIRSKKNQKHPQKIAPQDAIQGTQPERISLPQSESLSPVDLEGKNTKIAVFCKKKS
                     KKKVFRSQELEAVSESLVSSETIPESLDSAHHGGEDETEEEGESIKESHRIRKKSKKK
                     KHKSVTLATSGDSVSVLDSTAESALVDSPEGSGTLREEDVDHGSTEAEAQARPTEKHR
                     KEIQRLEPTHEESNLESASNSATRCVSEDRRDSDESDVDLGSAVRQLQEFIPDIQERA
                     ATTIRRMYRDDLGRFKEFKAQGVAIRFGKFSVKENKQIEKNVQDFLSLTGIESADKLL
                     YTDRYPEEKSLITNLKRKHAFRLHIGKGIARPWKLVYYRAKKIFDVNNYKGRYNEEDT
                     KKLKAYHSLHGNDWKKIGAMVARSSLSVALKFSQIDGDRNHGTWSKAETQRLIKAVED
                     VILKKMSSQELRELDSRLQEDPEGRLSIVREKLYKGISWVEVEARVETRNWMQCKSKW
                     TEILTKRMTHGGFVYRGVKALQAKITLIERLYELNVNDANEIDWEDLAGAIGDVPPPF
                     VQAKFYKLKAACVPFWQKKTFPGVGIIIKALRPLTLEAYTDMSKMTFSVEIIDYLYEN
                     SLPLLKEKLAKKMKKKDSQIQKPTAPKQNFLFKDIFHCDDDSDEGGLEEPSTSDTQ"
ORIGIN      
        1 tccttgcgcg ccgccatgtt actatggcag ccggatgcgc agcaagacgg aagtcagtac
       61 agtatttccg cctcacaaca cttccgggtt gaaagacgag tgctacacta tctcagggat
      121 ggaagggggc aaatttaaga cccacactgc aactttgcac aagaaaaaga aatggtcttc
      181 tgtgtctgaa aaaagacttc aaaaatggcc ctctcaacac ttggagagtg aacagcctca
      241 ggtatctgtg cggaagaaga ggaggaggga gtcgcagaca ccagcccagg agagcttaga
      301 aagtgaacag ccttggaaag ccaagaagaa gaagaagagg aggagggagt cccagacacc
      361 agcccaggaa agcttggaga gtgagcagac tccaatgtct atgctaggga aaaggaggag
      421 ggagtcccag acaccagccc aggagaactt ggaaagtgaa cagccttgga aagccaagaa
      481 gaagaagagg aggagggagt accagacacc agctgaggag agcttagaga gtgagcaacc
      541 ttggaaagcc aagagaaaga agaagaagga gaaggagtcc cagcagctta cttcttccct
      601 tctgaaaaat tcagagacct tccataaagc taaaaaaacc actgctgccc acaaaaagaa
      661 aaagaatagt gtttgggagg tggatatgga aactgggatc attcttgtgg ataaagaaaa
      721 catggagaac ctgctagaga cttctagaaa ggatgtggat attgtttatg ttgatatgag
      781 caagggacaa aggtcagcaa aagtgaatga aacagaagag ctgcccatgg ctgaaaccca
      841 gaaacgtgac tgtcgagagc tgcacagtga tatcaggagc aaaaagaatc aaaagcaccc
      901 ccagaaaatt gcaccccagg atgctatcca gggaacccag cctgagagga tctccctgcc
      961 ccagtcagag tccttgtctc ctgtggatct agaaggcaaa aacacaaaaa tagcagtgtt
     1021 ttgtaagaag aagtctaaaa aaaaagtgtt caggagccaa gaattggagg ccgtctctga
     1081 gagtcttgtt agctcagaga ctatccctga gagtcttgat agtgcacacc atggaggaga
     1141 ggatgagact gaagaagaag gtgagagcat caaagaatcc cacaggatcc ggaaaaagtc
     1201 caagaagaag aagcacaagt ctgttactct tgccacctct ggtgacagtg tctcagtgct
     1261 ggacagcacg gctgagagtg ccctcgtgga ctcaccagaa gggagtggta ctttgaggga
     1321 agaggacgtg gaccacgggt caacagaggc agaagcccag gcccgtccca ccgagaagca
     1381 caggaaggag atacagagat tagaacctac ccacgaagaa agcaatttgg aatcagctag
     1441 caattctgca acaagatgcg tatctgagga caggagagat tctgatgagt cagatgtgga
     1501 tttgggctct gcagtgaggc agctccaaga gttcattcct gacatacagg aaagggcggc
     1561 caccacaatc agacgcatgt atcgagatga cctagggcgc ttcaaagagt ttaaggcaca
     1621 aggggtagct attagatttg gcaaattttc tgttaaagaa aataaacaaa tagagaaaaa
     1681 tgtgcaagat ttcctgtcct tgactggaat tgagagtgca gacaagctgc tgtacacaga
     1741 cagataccca gaggaaaagt ctctgatcac taacctcaaa cggaagcatg ccttcagact
     1801 gcacattggg aagggcattg ctcggccctg gaagcttgtg tactatcgtg caaagaagat
     1861 atttgatgtg aataattaca aaggcaggta caatgaggaa gatactaaga agctgaaggc
     1921 ctaccattcc ctccatggaa atgactggaa aaagattggg gccatggtag cccgaagcag
     1981 cctttcagtt gccctcaagt tctctcagat tgatggtgat agaaaccatg gcacttggag
     2041 taaggcagaa actcagaggc tgatcaaggc tgtggaggat gtgattctaa agaagatgtc
     2101 ttcccaagaa ttaagagaac tagattctag actccaggaa gaccctgaag gtcgcctgtc
     2161 gattgtccgg gaaaaactct ataagggcat atcatgggtg gaggtggaag ctagagtgga
     2221 gacccggaac tggatgcagt gcaaaagtaa gtggacagag attcttacca aaaggatgac
     2281 ccatggtggg ttcgtgtatc gtggggtcaa ggctctacag gccaaaataa ctcttattga
     2341 aaggctgtat gaattaaatg tgaatgatgc taatgaaata gattgggaag atcttgctgg
     2401 tgccataggg gatgtccctc cacctttcgt tcaggcaaaa ttttataagc tgaaagctgc
     2461 ctgtgttccc ttttggcaga aaaagacttt tccaggtgtg ggcattatca ttaaggctct
     2521 gcgacctttg accttagagg cttatacaga tatgtccaaa atgacctttt ctgtagaaat
     2581 cattgactac ttatatgaga acagtctgcc tttgctgaag gaaaagttag ccaagaagat
     2641 gaagaaaaaa gacagccaga tccagaagcc cacggctccc aaacaaaact tcctcttcaa
     2701 agacatcttc cattgcgatg atgacagcga tgaagggggc ttagaggaac ccagcacctc
     2761 tgatacacag tgactggatc tcctcttccc gcagactgct ctattctctt gacctctgtt
     2821 gtgcattggc catagatcct gcttcctatg aagcctctcc catgtgggct cctaattcac
     2881 acggtgtttt gctggagcac tcgtgttctt cctagaagcc cagctgctgg tcttggaaga
     2941 gtctgtccaa ctgcaagagt ctggcagctg gagcacagct cccactggat tctcaggact
     3001 gggtgaaagg ggtcagtcgg gaaggtaaac caactgtagg tgtttcagag agagaactta
     3061 gggattaggt cccatcccac aaggtctatg catgggacac acactatgca ctggagatag
     3121 gcagagggtc acaggattaa ggccagcccg ggctccacag tttctcaagc accacacacc
     3181 acgacctgga atgctggagc actgcccaga gagtgggcag cccacctcca gctctgcagt
     3241 ctccggttcc ctgtgttctt ccagccgttc cccagaccca ggctggcagc gactgcttct
     3301 actgctctgc agagaaatgc atctatgtgt gacccttagc agaacactgt tgcaaggagt
     3361 ctggcccatc tgtgctgggg agacagagaa aggaaactgt ggctaatgaa acagtatact
     3421 gctgccccca tcggtgccac tcggcagtct actgtatcca tgtgccgacc tgcccccaga
     3481 aatctcaggc ataatttcca tggcaccatt agaaggtggg ctaagccagc tactgtgaga
     3541 aggaagcaca ataacgggct tctgcttgcc atgtatccag cacagacgtg cagataacag
     3601 agtaatcggt ggtacacact aatgaaccca gcattcacat ggggcagaag gatcgggagt
     3661 tctgagtggt ccttgcaagt agcaggttct aggccagcct aggctatgga taactctgtc
     3721 tcgaacacac acaaagcatt gtatgaatgg tgttatttta gaacatggtt ctctacccag
     3781 ccccctctat ccctcaggca ttctagtctc tgtgctaaca ggactaaatg actcctacaa
     3841 aaataatagt actaatgtat aaaccaattc tatgtttgta atagagaaaa aattgaatat
     3901 tctttaacat gaagtatggt cctagaaagg aatattatat ggtaaattaa attgattaca
     3961 atagatctgg ttgacatgaa agtatatttt tgtgaaatat ttcaaaagaa tgtatatttt
     4021 ctcagtttta taaaaatgaa gaataaattg gttgtttata
//
