LOCUS       NM_001007693            2015 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus tetratricopeptide repeat domain 9C (Ttc9c), mRNA.
ACCESSION   NM_001007693 XM_219559
VERSION     NM_001007693.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001007693.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC062803.1, FQ211550.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMN06680422 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-239               JAXUCZ010000001.1  215141335-215141573 c
            240-488             JAXUCZ010000001.1  215141002-215141250 c
            489-671             JAXUCZ010000001.1  215137568-215137750 c
            672-2015            JAXUCZ010000001.1  215132042-215133385 c
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..2015
                     /gene="Ttc9c"
                     /gene_synonym="RGD1359253"
                     /note="tetratricopeptide repeat domain 9C"
                     /db_xref="GeneID:309196"
                     /db_xref="RGD:1359253"
     exon            1..239
                     /gene="Ttc9c"
                     /gene_synonym="RGD1359253"
                     /inference="alignment:Splign:2.1.0"
     exon            240..488
                     /gene="Ttc9c"
                     /gene_synonym="RGD1359253"
                     /inference="alignment:Splign:2.1.0"
     CDS             251..766
                     /gene="Ttc9c"
                     /gene_synonym="RGD1359253"
                     /note="TPR repeat protein 9C; TPR domain containing
                     protein RGD1359253"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 9C"
                     /protein_id="NP_001007694.1"
                     /db_xref="GeneID:309196"
                     /db_xref="RGD:1359253"
                     /translation="MEKRLQEAQLYKEEGNQRYREGKYRDAVSRYHRALLQLRGLDPS
                     LPSPIPNLGPQGPALTPEQENILHTIQTDCYNNLAACLLQMEPVKYERVREYSQKVLE
                     RQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQSELSSYHR
                     KEKQLYLGMFA"
     exon            489..671
                     /gene="Ttc9c"
                     /gene_synonym="RGD1359253"
                     /inference="alignment:Splign:2.1.0"
     exon            672..2015
                     /gene="Ttc9c"
                     /gene_synonym="RGD1359253"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaattttgcg ggcggtcaca cacttcgaac gtttagtccg ggcctttgaa tattcctaga
       61 gtctataatc acgccgggat ctcttctaat ggaactcatt tgctctatgg cttcactacc
      121 ctcacatcat tccttttttt agtttgcgga acttctggaa actgaaaact accaccgtaa
      181 gatagatggg actagtaaaa acagcaaagc tcaaatcctt gcgagcctct tgaaggaggt
      241 cccaacagtc atggagaagc gccttcagga ggctcagcta tacaaggagg aaggaaacca
      301 gcgctaccgg gaagggaagt accgagatgc tgtgagtagg taccatcgag ctcttcttca
      361 gctgcggggt ctggacccaa gtctgccttc ccctataccc aatctgggac ctcagggccc
      421 agcgcttaca ccggagcagg agaacatact gcacaccatc cagaccgact gctacaacaa
      481 cctagctgcc tgtctcctcc agatggagcc agtgaagtac gaacgagtga gggaatacag
      541 tcagaaagtc ttagagcgac aacccgagaa tgccaaggcc ttgtatcggg ctggagtagc
      601 cttcttccat ctgcaggact atgaccaggc tcgacactac ctgctggctg ctgtcaatag
      661 gcaacctaaa gacgccaatg tccggcggta cctccagttg acacagtcag aactcagcag
      721 ctaccatagg aaagagaaac agctgtacct gggcatgttt gcttagtgaa gaaaaaggat
      781 gcttctcaac ttgaactcaa gtggacaagt aaagacccat caagggaatc tgagcctcgg
      841 caagagaaat tcacccttta cctctgaccc aggtggattt gcattgtttc ctgttctgca
      901 cagctctttg ctacttagac catctgcatc gtttattgta tgtcccatag tatatttgaa
      961 tggctttcaa tccatgtttg cctggagaag tagactagag agcattcatc aactgtgggt
     1021 ggaattgact ctatttgtgg cgtagactta ctgagatgtt agacactttc agacacagag
     1081 cagaggccag tgaaggatgc gacagcaagg attggcagaa ggaatcttct gctgtttcct
     1141 cagatgcctt tgcttttcct actgggatat ggatatatgt aaacaagata attatacatt
     1201 gagcccgagt acatttatat taaagatttc aattaataat tttagggcta agagtgtagc
     1261 tcaatgttag atggcttgcc tagcatatat aaggccctgg gtttgattcc ccagtgctgc
     1321 aaaactaacc aactaacaag aaaagaatca aacttttgtt atttaaatta ttatctctta
     1381 tactccttta atatttcaga cacattccgg tttttccccc cataaaagta tcttctttct
     1441 aggcaggcat gatggtacac gcctgcagtt caagcactta ggagtctggg acagtcacaa
     1501 attcaaggcc agccagatct tgtttaattc ccctttctgt ttttttggtt tgctttgttc
     1561 cctcgtaatt tctagttctt gctgttactt gaactcagat catggacata gtacaacttg
     1621 tttgtcatta atttattctc tctctttttt tttaaacttc tggaatgaat gtctgggata
     1681 catgaaaccc tgtttttagc acttcaatag ttaagactat ttactaactc tgtccttgtg
     1741 ccaagaagga accccagtgt tggtgagttt tccctgggtg tgtgtttata tatggtgctg
     1801 gagtttaaac ccaccttgca catactaggc aagcatcctg tcatcaagct acacagctag
     1861 tcccacagta ttttcttttg catttcagaa agtatttctc tgtgtagcac tggctagcca
     1921 tatcttaata tttactagat acatttctaa agtgtgttca cttttctgaa aggcattcct
     1981 tcttgaaagt gtaccgtaat aaagcatggt agaac
//
