LOCUS       NM_001134731            2109 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus tetratricopeptide repeat domain 9 (Ttc9), mRNA.
ACCESSION   NM_001134731 XM_001054586 XM_576070
VERSION     NM_001134731.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Shrestha,S., Sun,Y., Lufkin,T., Kraus,P., Or,Y., Garcia,Y.A.,
            Guy,N., Ramos,P., Cox,M.B., Tay,F. and Lin,V.C.
  TITLE     Tetratricopeptide repeat domain 9A negatively regulates estrogen
            receptor alpha activity
  JOURNAL   Int J Biol Sci 11 (4), 434-447 (2015)
   PUBMED   25798063
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Yu,Y., Kranzler,H.R., Panhuysen,C., Weiss,R.D., Poling,J.,
            Farrer,L.A. and Gelernter,J.
  TITLE     Substance dependence low-density whole genome association study in
            two distinct American populations
  JOURNAL   Hum Genet 123 (5), 495-506 (2008)
   PUBMED   18438686
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On or before Sep 5, 2008 this sequence version replaced
            XM_576070.2, XM_001054586.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CK364952.1, SRR21887623.3129413.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-480               JAXUCZ010000006.1  107064527-107065006
            481-663             JAXUCZ010000006.1  107095228-107095410
            664-2109            JAXUCZ010000006.1  107097916-107099361
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..2109
                     /gene="Ttc9"
                     /gene_synonym="RGD1565985"
                     /note="tetratricopeptide repeat domain 9"
                     /db_xref="GeneID:500689"
                     /db_xref="RGD:1565985"
     exon            1..480
                     /gene="Ttc9"
                     /gene_synonym="RGD1565985"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..743
                     /gene="Ttc9"
                     /gene_synonym="RGD1565985"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 9A"
                     /protein_id="NP_001128203.1"
                     /db_xref="GeneID:500689"
                     /db_xref="RGD:1565985"
                     /translation="MERKGLAARASGNPSPPALGEGPRPGPPPCVPSGGGAPERGQAG
                     AAAEPAELIRRAHEFKSQGAQCYKDKKFREAIGKYHRALLELKGLLPPPGERERDARP
                     ASPAGIPKASRLSEEQSKTVEAIEIDCYNSLAACLLQAELVNYERVKEYCLKVLKKEG
                     ENFKALYRAGVAFYHLGDYDKALYYLKEARTRQPSDTNVIRYIQLTEMKLSRCSQREK
                     EAM"
     exon            481..663
                     /gene="Ttc9"
                     /gene_synonym="RGD1565985"
                     /inference="alignment:Splign:2.1.0"
     exon            664..2109
                     /gene="Ttc9"
                     /gene_synonym="RGD1565985"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctgcggggc gcgaagccag cgcccggcgc ttttaaagcc cggatcgcgg cgcgctcgag
       61 gcgcgggcgg cggccggatg gagaggaagg gcttggcagc ccgagcctca gggaacccta
      121 gcccgcccgc gctcggtgag ggaccgcggc ccgggccgcc accgtgcgtc ccgagcggcg
      181 gaggggcccc ggagcggggc caggctggag cggcggccga gcccgcggag cttatccggc
      241 gcgcgcacga gtttaagagc caaggggcgc agtgctacaa ggacaagaaa ttccgcgaag
      301 ccatcggcaa atatcaccgg gcgttgctgg agctgaaggg gttgctgccg cccccggggg
      361 agcgggagcg ggacgcacgg ccagcctccc cggcagggat tcccaaagcc agccgcctct
      421 cggaggaaca gagcaagacg gttgaagcca ttgagatcga ctgttacaac agcctggcag
      481 cctgcctgct ccaggctgag ctggtaaatt atgagcgagt caaggagtac tgcctcaagg
      541 tcctgaagaa ggaaggagag aacttcaagg ctctttacag ggctggtgtg gccttctatc
      601 atcttgggga ctatgacaaa gctctctact acctaaagga agcaaggacc cgacaaccct
      661 cagacaccaa tgtgattcgg tacatccagc tgacggagat gaaactcagc agatgttctc
      721 aaagggagaa agaagccatg taacaaagca gcctctctcg agccacactc acacctgacc
      781 agggacttcc aggcacccgg tggtggagag tcccgacgtg ggttctctcc tcttcccagc
      841 tcttcctgta cttctgttgc tcatcctgtt gctgccccaa ctcttgtctg tcagaaggtg
      901 agaggcgttc ttggaccttg gtgagcagcc caaacatgga cttatcctct tctctactac
      961 gccagcaaat gggacagatg ggcaagagtc tcgtggactg ggggtggtcc tatgtctttg
     1021 actggctctg agcgtggcgc ctgtggagca cagtctggat ccttctgcag cttcccagtg
     1081 gatcagagaa gcatctgaag ggaatcgggg ctgatgaacg caataaccat tggtcagacc
     1141 aatgctgaga ttgtagattt ccttccgccc cctcagtcac ctgagcgcct gccacatccc
     1201 cggacttgtc taggcttgta gtttcttttc tcccactgcg aggtccggtc tttgccagga
     1261 ttcacatgcc attaaggccc actctcagtg gcctctggtg accacacata ccattccccc
     1321 acccccagct agccggcagc tgtaatagca gaagggcggg gtgaaaaggt tgggggcaga
     1381 gcacactggg taggtgacag aggagggaaa gagccttggg tggactgagg gattagacta
     1441 atcaatataa ataaaaacta actcacaggc atccgttcag gtcatttctg ttggaagcag
     1501 tctgctccct tctcttccct cactgtccct caggcagagt ggcctacagc ttccggtaaa
     1561 gccggtggcc cttagaccaa gactatttgc atcatgttgg ccacagcctt tgtgcttttg
     1621 ggagtgggcc aggattacgg aaaccccttc aggaataggt tttgtgggaa tttgtacacc
     1681 tcacccccgt ttttgacaaa aaattcagta tctagcacat aacaactttt tgttgaatgg
     1741 ataaatttgg actgcagact gactcccctg ccttaaacta attgggtccc agcctggcct
     1801 cctgacacac atgctcttta tgctgtgctg tgttgaaaca tttcccgagg gcttactggt
     1861 cgcccaccat agtgcaatac aggacagagt cccagccttc acgaagacag gaaagctgag
     1921 aaacctatga gattatcacc aatgacacca ttaacgtata tgacgcttaa acgttttcaa
     1981 ggcactttca tgtatttttc gtgtgactta gcgagacact attgtataaa attaaaatat
     2041 atacagatgc aataatgtta atagttagga tttattaaat gcactatctt cagatcgtta
     2101 cacggacaa
//
