LOCUS       XM_039113196            6313 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 6
            (Ttc6), transcript variant X2, mRNA.
ACCESSION   XM_039113196
VERSION     XM_039113196.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6313
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6313
                     /gene="Ttc6"
                     /note="tetratricopeptide repeat domain 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:366631"
                     /db_xref="RGD:1560556"
     CDS             370..6129
                     /gene="Ttc6"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 6 isoform X1"
                     /protein_id="XP_038969124.1"
                     /db_xref="GeneID:366631"
                     /db_xref="RGD:1560556"
                     /translation="MSTIPKHFGLTARDESYMFKELEKIRQKTKKDYEQLRQRLAARS
                     VLDAGSEDDLQDQEAEERPGTAGSSSTKKGHVSWAAKSSSSAKPSSAKLSSRVLSGER
                     PVAADLQGAPHSARGSPGKPQPFRPREFYLRSSAFRRYPPCKEAPAIAPQFGTARSVF
                     LLRPRSRRRRLRGKPREVPVAKRVSKSPSHGSPLIDMASSRYRHASSLSSLSSEAEEN
                     ARLRRLRIRTHFQREIMRWHHKPSSRSGREGSSTSQGTGSLQGARYLPMNIEEIIASL
                     QSEAQQASDQTIKELIQSILGQNYDISMEDISMMEQMYLRPSQVQIEVPEVMEEKTSG
                     FKEQPTVPSIYEELPETVSSIFQVEQEEAVEWRAIEEDSKAIKSQEILDIVPPEDSGK
                     PADTVLPTSDAKPTRRPTLDVEPTGFMQIRGKEVKPTYKSTPAKPTKPRIPVRPEEDK
                     KRIKKVPQPPSLPHLHGLCTIVPAMELPVDLRLASRVYHTPDRKGHKAVLGLLGSSLL
                     GDHCIDEQRERLLFGVPAMSEMQKYTGVTPASAEGLPGSEQTNQREANKANLQLSGEE
                     VSAYPGTSKMFWNLTAPKFAIPESTMRETLYPKYESVQTSRLLTEKLSESQSEIILES
                     YTKRSFKNLIIKKSASCEDIQKYSSVPYTRLKRSKSTVELRKREIPPQFIMKDDIDSN
                     LQQLAYQRQKEMERQVAKQRALLDLPIKDSLESLHETESLKCLSVSLVEASRQAGISY
                     IVFPSKRKKVLKKGFKFHRAAQVYEQLSRPPKKIERSVSHGVLPGERKYFLKVPLYER
                     QIRCPSVPTLLNFDQFVQSRGGIPENTDPRKWVLELFTKERCQRTRTPVALSVQKSAP
                     EPVIEISKLELTDYVKCNLPPEVIKYYESELELLTQEIKSEKKNPAFAYCRRGAIYRK
                     LGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEA
                     YLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKVLAIDDFSKCI
                     YYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQASYDPSFNEHYISPGN
                     LLPGTKMWSILSSCDFFLQTEFKSKSKQSSIMIKTNRGRAYFKRNLFKQATEDFSAAI
                     HSDPNNWLALYYRACLFRKCSPQRALQDYSVSVLINDGYDNLNCFLHRGILYTELKFW
                     MLAVCDFETVVTLERTATLAYINIGLIYLQHLDNYTEAFWWFTEAIRVDPLYIQSYIC
                     RAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQVAEM
                     NKGVIELSPIQEALIYSFCENHDKAIHVLEGVIANKPDISTYALLAKAQMKAKRIKES
                     VRLFKKALELYTFSDKGPAATSVSADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDF
                     AEAFYHRGLCKVKLNKQHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCN
                     EAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIK
                     KHEMALRDYGIVLLLQAGETIALNTLVNRGLIYTELEQYGFALEDFKEASMISETSVK
                     LCQATAMCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKAMIQAQKD
                     FLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQ
                     MSNYFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAY
                     FNAGNIYLHHRQFSQASDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAM
                     ELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIE
                     EAMCDYNQALDLEEYSKAM"
ORIGIN      
        1 gctgccggag aaggacctgg gtggtggcgt cagatcccca gcgccaggat cctgctccct
       61 gaatgacccc gagttccctc ctagaggtgc tcactaccct gtgcacctga ctacgactgg
      121 gttcttggtc cacacggctc ctctgcttcc ccgaccgatt cttgacccaa agttcaaccc
      181 tgggagacca cccccacttc ccgggcttcg ggcttggaaa ggggaaaagc cccacttttg
      241 actggtcacc cagtcatctg agtcagccaa gcagagtgac gttaggccga cctgggctcc
      301 tggctagcag aacggaggcg ctgccacgaa actcgtacct gcggctaaga gcaggtccag
      361 ttcgtcaaga tgtccaccat cccaaagcac ttcggactga cagccagaga tgaatcgtac
      421 atgttcaaag agcttgagaa aattcgccag aagaccaaga aggattatga gcaattgagg
      481 cagaggctgg ccgccaggtc ggttttggat gcaggttctg aggatgatct ccaggaccag
      541 gaggcggaag aacgtccggg cacagcaggc agcagttcga cgaagaaggg gcacgtgtcc
      601 tgggcagcca agtcttcgtc ctccgctaag ccatcctcag ccaagctgtc gtctagggtg
      661 ctgagcgggg agcgccccgt tgcggccgac ctgcaggggg cgccgcacag cgcgcgaggc
      721 agccctggga agcctcagcc attccgcccg cgggaattct acctgcggag ctcggcgttc
      781 cggcggtacc cgccctgcaa ggaggcgccg gccatcgccc cgcagtttgg cactgcccga
      841 tccgtgtttc tgctgcggcc gcgctcgcgt cggaggaggc tgcgcgggaa gccccgggag
      901 gtgcccgtgg ccaagcgcgt gtccaagagc ccctcgcacg gatcgccctt gatcgacatg
      961 gcctcctccc gctacagaca cgccagctcc ctgtctagcc tgagcagcga agccgaggaa
     1021 aacgcgcgtt tgcgcaggct gcggatccgc acccacttcc agcgagagat catgcggtgg
     1081 catcacaagc cctcgtccag atccgggcgt gaggggagtt ccacgagcca gggaacagga
     1141 tctttgcagg gggcacgcta cttgcccatg aacatagagg agatcatcgc ctctctgcag
     1201 tctgaagccc aacaggcctc agaccagacc atcaaggagc tcatacagag catcctgggc
     1261 cagaactacg acatctcaat ggaagacatt tcgatgatgg aacaaatgta cctcaggcca
     1321 tctcaggtac aaatcgaggt acccgaagtg atggaagaga aaacgtcggg ttttaaggaa
     1381 cagccaactg tgccaagtat ctatgaggag ctccctgaga ctgtgtcaag catcttccag
     1441 gtagaacagg aggaggccgt ggaatggaga gccatagagg aagatagcaa agccattaaa
     1501 tctcaggaaa tcttagacat tgtaccaccc gaggactctg ggaaacctgc ggataccgtt
     1561 cttcccacaa gcgatgcaaa accaacccgg cggccaactt tagacgtgga accaacagga
     1621 ttcatgcaaa tcagaggaaa ggaagttaag ccaacatata aaagtacacc agccaagcca
     1681 acaaaaccaa gaatacctgt gagacctgag gaagataaaa aacgaattaa aaaagtacca
     1741 cagcctcctt cccttcctca tctgcatggc ctgtgcacca tagtcccagc catggagttg
     1801 cctgtggatc tgcgcctggc ttctcgggtg taccacactc ccgacaggaa aggtcacaag
     1861 gctgtgcttg gcctattggg gtcgtctctt ttaggtgacc actgcattga tgaacagaga
     1921 gaaagactgc tgttcggtgt tcctgctatg agtgagatgc agaaatatac tggtgtcact
     1981 ccagcgtcag cagagggatt acctggatca gagcagacaa atcagcggga agccaacaaa
     2041 gcaaacctgc agctctcagg agaagaagtg tctgcgtatc ctggaacatc aaagatgttt
     2101 tggaatctta ctgcacccaa attcgctatt ccagaatcaa ccatgagaga aactttatat
     2161 ccaaaatatg agagtgttca gacaagcaga ctcttaactg agaaattatc ggaatcccag
     2221 agtgagatta ttttagaatc ctacaccaaa agaagtttta agaatttaat aataaaaaag
     2281 tctgcatcat gtgaggatat ccaaaaatat tccagtgtac catatacacg attaaagaga
     2341 tcaaagtcta cagttgagct gaggaaaaga gagatcccac cacaatttat aatgaaggat
     2401 gacatagaca gcaacttgca gcagctggca taccagaggc agaaggagat ggagcgccag
     2461 gtggccaagc aaagggcgct gctggacctc cccataaaag acagtctgga aagcttgcat
     2521 gagacagaaa gcttaaaatg cctgtcggtt tcgctggttg aagcatcacg gcaggctggc
     2581 attagctaca ttgtatttcc tagtaaaagg aagaaagtat tgaagaaagg gtttaagttc
     2641 cacagggcgg cacaagtgta tgaacagctc tccaggcctc cgaagaaaat agaaagatca
     2701 gtatcccatg gagtacttcc tggagagaga aagtatttcc ttaaagttcc attatatgaa
     2761 cgtcaaataa ggtgccccag cgtacccaca cttttaaact ttgaccagtt tgttcaaagc
     2821 agaggaggaa taccagaaaa tactgatcct cggaaatggg ttctcgagct atttactaaa
     2881 gagagatgtc agaggacacg cacaccagtt gcgttatctg ttcaaaagag tgccccagag
     2941 ccagtgatag agatctccaa actggagtta actgattatg tgaagtgtaa tcttccccca
     3001 gaggtcatta agtactatga atctgaactg gagttactga ctcaagaaat aaaaagtgag
     3061 aaaaaaaatc cggcatttgc gtattgtagg cgtggagcta tttatcgaaa actgggaaag
     3121 ctgcaaagtg ccatgaacga cctgcaggaa accatatttg tggagccatt gtttctaaat
     3181 gcctattggc acagacattt catttatctt ttccaagaca aaatcaatga tgctttggat
     3241 gatttgaatt tcataactaa gtacaataaa aaccatgcag aggcgtactt gtcaaaggca
     3301 gagattttca gggagaagaa cgatattaca ttggcaattc tgaattacag tcaggccatt
     3361 aagtgcaggc ccaaagatgc tagcctctac tttaagagag gggagatgta cgagaagaca
     3421 aacaaagttc tggcgattga tgacttctcg aaatgtattt attatgatcc caaaagatca
     3481 gacgcattat ggaaacgtgg gatgttttac tttgaaaacg aaaactggac cggggccgta
     3541 tatgatttta catctctgtt aaaacttgaa ccccataatt ctcaggcaag ttatgatccc
     3601 agtttcaatg aacattatat aagtcctggt aatttacttc cagggaccaa aatgtggagc
     3661 attttatctt cctgtgactt ctttttgcaa accgaattca agagcaaatc aaaacaatca
     3721 tccatcatga tcaagacaaa cagggggaga gcatatttca aaaggaattt attcaaacaa
     3781 gcaaccgaag acttttctgc tgccatccac tcagacccca acaactggct agccctgtac
     3841 taccgagcct gcttatttag aaagtgtagc cctcaaagag cgctgcagga ctacagtgtg
     3901 tcagttctta taaatgatgg ctacgataac cttaattgtt ttctacatcg gggtatactc
     3961 tatacagaat taaagttttg gatgctggca gtttgtgatt ttgaaactgt cgttactctc
     4021 gaaagaactg ctactttggc ttacataaat attggcctta tatatctaca acacctggat
     4081 aattataccg aagccttttg gtggtttact gaggcaatta gagtcgatcc tttatatatt
     4141 caaagctata tttgtagagc agaaacctat tctaagctgc ataaactgaa aaaagcagta
     4201 actgaattat ctcgggctat ccatctccag cctgatgcaa tccacctata cataataaga
     4261 ggacagtatc ttcttatgat gaagagttat gatcttgcaa agctcactat ttttcaagta
     4321 gcagaaatga acaaaggtgt catcgagctg tccccaatac aggaagcact catttattca
     4381 ttttgtgaaa accatgacaa ggccattcat gtcttggaag gggtcatagc caataaacca
     4441 gatatctcta cttacgcact cttggcaaaa gcccaaatga aggccaagag aataaaggaa
     4501 tctgtgagac tatttaagaa ggcattggaa ctgtatacat tttctgacaa aggaccagct
     4561 gccactagtg tttcagcaga ttgtctgtat aacttgggtc tttgttacat ggaggaaggc
     4621 aattttcaaa tggcctatga atcttttaca aaagctgtga gagcaaatcc tgattttgca
     4681 gaagcctttt atcatcgggg actttgtaaa gtaaaactca acaagcaaca ctcaattctg
     4741 gacttcaatc gggcacttac cctaaatccc gaacattacc aggcatattt aagtcgagta
     4801 gcttattatg gtttaaaggg cagatactcc aaagccattc tgaactgtaa tgaggccatc
     4861 agactttacc ctgagagtgt gcgtgcctac atctgcagag gagttctgaa atactacaac
     4921 agaaattaca agctagctat tacagattta actacagctg tcggcatgga caagaacagt
     4981 tacacagcgt tttacaacag agccctgtgt tataccaaga taaagaaaca tgagatggct
     5041 ttaagagact atggaattgt gctgcttctt caagctggag aaaccatagc attaaatacc
     5101 ttagtcaacc gtggactcat ctatactgaa ctagaacagt atggctttgc actagaggat
     5161 tttaaagagg cttcgatgat aagcgagact agtgtgaaac tttgccaagc tacagccatg
     5221 tgccaccaca gaattaaaga atttcaagga gctgttgaat tctttaccag ggctattaaa
     5281 attaacccac gttatctgga cgcttatatt ggacggggga attcttacat ggagtatgaa
     5341 cagaataaag ctatgataca agcccagaag gactttctga gagcgcttca tcttgaccca
     5401 tcaaatttaa aagccagaat tagtctaggc tataatttgc aggcccaagg aaaattccag
     5461 aaagcttggc aacactttac tattggcata gaagctaatc caaagaacta tctagcctat
     5521 gaaggacgag ctgtggtttg tcttcaaatg agtaattatt tcgctgcaat gcaggatatc
     5581 aattgtgcca taaagatcaa ctcgacagca gaattcctaa caaaccgtgg tgtgattcac
     5641 gagtttatgg gtcaacaaca gaacgcaatg gccgactatc aagcagcgat ttctctggac
     5701 cccaactact cgctcgccta ctttaatgcg ggaaacatct accttcatca ccggcagttt
     5761 tctcaggcca gcgactactt ctcaacagcc ttgaagctta atccagaaaa cgaatgtgct
     5821 ctcatgaatc gagctgttac aaactcagta ttaaagaaat atgaagaagc agaaaaagat
     5881 ttttcacatg caatggagct ctgtccccac tgggctgcac tgtattttaa cagagcaagt
     5941 ttctatgtct acttgaagaa gtatgaactc gctgaagagg accttgacag agccctgtct
     6001 ttgaagcctg atgatgctat aatgtataat ctcagagcac aagtccgtgg caaaatagga
     6061 ctgatagagg aagctatgtg tgactataac caagcccttg atcttgaaga atattccaaa
     6121 gctatgtgaa tacagaccct tgtggtttct gtagtaggtt aagtattttt cttcctgaag
     6181 ctgaaatata tttgttgttt agaaatgcca ttcttgttgt attcatcaca cttattaagt
     6241 ggttattctt tataaccaca taacacattt taatacacta agtattaaat aaattttgtt
     6301 aaatgaacct taa
//
