LOCUS       NM_001170605            3960 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tetratricopeptide repeat domain 41 (Ttc41), mRNA.
ACCESSION   NM_001170605 XM_001079794 XM_001080111
VERSION     NM_001170605.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3960)
  AUTHORS   van den Akker,E., Vankan-Berkhoudt,Y., Valk,P.J., Lowenberg,B. and
            Delwel,R.
  TITLE     The common viral insertion site Evi12 is located in the
            5'-noncoding region of Gnn, a novel gene with enhanced expression
            in two subclasses of human acute myeloid leukemia
  JOURNAL   J Virol 79 (9), 5249-5258 (2005)
   PUBMED   15827139
REFERENCE   2  (bases 1 to 3960)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On or before May 22, 2010 this sequence version replaced
            XM_001079794.2, XM_001080111.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.39230.1,
                                           SRR26643293.39226.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-796               JAXUCZ010000007.1  23019762-23020557
            797-977             JAXUCZ010000007.1  23028571-23028751
            978-1192            JAXUCZ010000007.1  23032961-23033175
            1193-1353           JAXUCZ010000007.1  23039100-23039260
            1354-1789           JAXUCZ010000007.1  23040151-23040586
            1790-2029           JAXUCZ010000007.1  23042054-23042293
            2030-2228           JAXUCZ010000007.1  23045360-23045558
            2229-2407           JAXUCZ010000007.1  23046662-23046840
            2408-2547           JAXUCZ010000007.1  23050810-23050949
            2548-2719           JAXUCZ010000007.1  23056170-23056341
            2720-2867           JAXUCZ010000007.1  23056961-23057108
            2868-3020           JAXUCZ010000007.1  23059082-23059234
            3021-3154           JAXUCZ010000007.1  23062307-23062440
            3155-3284           JAXUCZ010000007.1  23074816-23074945
            3285-3960           JAXUCZ010000007.1  23075038-23075713
FEATURES             Location/Qualifiers
     source          1..3960
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..3960
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /note="tetratricopeptide repeat domain 41"
                     /db_xref="GeneID:362863"
                     /db_xref="RGD:1302940"
     CDS             1..3939
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /note="tetratricopeptide repeat protein GNN; Grp94
                     neighboring nucleotidase; TPR repeat protein GNN;
                     grp94-neighboring nucleotidase; TPR repeat protein 41;
                     first gene upstream of Nt5dc3"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 41"
                     /protein_id="NP_001164076.1"
                     /db_xref="GeneID:362863"
                     /db_xref="RGD:1302940"
                     /translation="MIEEAIETAQRYNSQPILKRQKPIRPYICSTIDFQDERDFLAKT
                     IFPQLNDFCSSRGTYFKAVDLRWSALKAHKSFTNNQFRQYSCLHSQHLKLCLDYVNRC
                     FPFFICLLGQTYGDFLPDYTPFLLSKVKDLESLSKGEQNLYVAAKNGYPWVLKTPNCS
                     LTEFEIIQAAFRKKSQFQFFYFRTSNSLLRTFSEEEEEEEEKLSSGYQVDRQGKVKVG
                     KLKAKIIGKGLPVRFYRDLDELGDMVLKDWSAVVEELYPVTMIMENIDYKHSFENLYH
                     EEFVENCKQVFVISKESNRTFEMLERFAIKDLELNSDSTVAGAGLDSILRINSLPTCK
                     SILLLCGERGCGKSTLIANWVDDFKSRHPGVLMVPYFVGSTCESCDIMSVMHYFIMEL
                     QHRANGPQLEMDFLNEDSNVLVFSLLIEVFMAAISLKPCILVLDGIEELVGIYGISGQ
                     KAKDFSWLPRSLPPHCKFILSSVSSSLSCKSLCARPDVKTVELNSLGDEDTKFSIFRQ
                     HLSAPDQERFGQSKPILRKKPNLNPLKLTLIASELQECRIYRNEFQCLREYLEVASVQ
                     ELWELILKRWVEDYSWPLKHKETTVDNVISGLSGWVVDVLCLLCISHCGLAEDELLQI
                     LDMMGYRDHHKVTAVHWAAFRNATKNWIQEKPNGLLYFQHQSLRNAVEHKMLGVTISV
                     RESNPNVSQNSTNHKKVHFHQVLMKYFQRQTIFWRVYQELPWHMKMSGYWEGLCGFIT
                     SPIITDFISKIQNPSLWTRLHLVHYWDVLLEAGSDVLEAFLLSAAKIEAEDSQKLKKR
                     TTLSVLECSLFEITAADKGRMILFIGSFLKLMGKINEAEKLFLSVEDMLLQSPSMTEM
                     LLKAQNAIGELYLDIGMMQKGLTYFQKAWSNLLRFTLSDLKISQELMKQKVKVMNNLA
                     KSASEEFLKENHVLEYATEVSKYVMDNPRDQATMRYTEGVLMLASGNAALAKLKFQEC
                     LNIRRRLFGNKNILVGEIMEFLADLLFFLLGENEKSQRKQAIEYYKQVIKIKEKADSV
                     ATCKLVRKQLNISLSDTLCKLAGQLLSGDFCHHATMEAVSYLYRSLDLRAAHLGPSHA
                     SIEGILHLLREIQRSRGRRSWPQGMNQLYPEGSSCGFSLWENLPKLNFHSAQSSDTVN
                     TAMCMNIHRFQRAKSTEPSLVSDKAKYFPGRGKKTLTPILSMSAEEKAQNSQIRNSLR
                     KQPPRKKGVYPLKTYSLIDKNGSVRLSRQRVFSAELGSGRSLINSIYRQPLRAPLSAD
                     NPWKSISELVSEKWLFHTPHYCFTPQKSVFPRRSQIETKMLKTSHDFDKE"
     exon            1..796
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            797..977
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1192
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            1193..1353
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            1354..1789
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            1790..2029
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            2030..2228
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            2229..2407
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            2408..2547
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            2548..2719
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            2720..2867
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            2868..3020
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            3021..3154
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            3155..3284
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
     exon            3285..3960
                     /gene="Ttc41"
                     /gene_synonym="Gnn"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgattgagg aggcaatcga gactgcacaa agatacaaca gccaacccat tttaaagcgc
       61 cagaaaccta tccgacctta catctgttcc actatagatt tccaagatga gagagacttt
      121 ttagccaaaa ccatcttccc tcagcttaat gacttctgca gctcccgggg cacctacttc
      181 aaagctgtgg acttgagatg gtcagccctg aaggcccata aatctttcac caataaccag
      241 ttccgacaat actcctgcct acactctcag cacctaaaac tctgcctgga ctacgtgaac
      301 agatgcttcc cattttttat ctgcctgctg gggcagacct atggagattt cctccccgac
      361 tatacccctt tcctgttatc caaagtgaag gacttggaaa gtttatccaa gggggaacag
      421 aatctatatg ttgctgccaa aaatggttat ccctgggtcc tgaagacccc caactgcagc
      481 ctgacagagt tcgagatcat ccaggcggca tttcggaaga aatctcaatt tcaatttttc
      541 tacttccgga catcaaactc gctgctgcgg accttcagtg aggaggaaga ggaggaagag
      601 gagaagctgt cctcaggtta tcaggtggac aggcagggga aagtgaaggt tgggaagctc
      661 aaggctaaga tcatcggtaa agggcttcct gtcagattct acagagacct ggacgaactg
      721 ggtgatatgg ttctcaaaga ctggtcggct gtcgtggagg agctgtatcc agtcactatg
      781 atcatggaaa atatagacta caaacacagt ttcgagaatc tgtatcacga agagtttgtg
      841 gagaactgca agcaagtttt tgttatttcc aaggagtcaa acagaacctt tgaaatgctg
      901 gaaagatttg ctataaaaga tcttgaactt aactctgaca gtactgtggc aggtgcgggg
      961 ctagactcca ttctcagaat caattccctt ccgacttgta agtccatttt gctcttgtgt
     1021 ggggagcgcg gctgcggaaa gtccactctg atcgccaact gggtggatga tttcaaaagc
     1081 agacacccag gagtgctgat ggtcccgtac tttgtgggca gtacgtgcga gagctgtgac
     1141 atcatgtccg tgatgcacta cttcatcatg gagcttcagc acagggccaa cggtccccag
     1201 cttgaaatgg atttcctcaa tgaagactcg aatgtcttgg tcttttcgct tctcatagaa
     1261 gtgttcatgg ccgctatcag cctaaagccg tgcatccttg tattagatgg gatcgaagag
     1321 ctggtcggta tttatgggat ttcaggtcag aaggcgaaag atttctcctg gctgccgcgc
     1381 tcgctccctc ctcactgtaa attcattctg agcagcgtct cctccagtct gtcctgcaag
     1441 tcgctgtgtg cccgccctga cgtgaagacc gtggagctca acagcctggg ggacgaggac
     1501 acaaagttca gcatcttcag gcagcacctt tcagctcccg accaagaacg ctttgggcag
     1561 agcaagccca ttttgcggaa gaaaccaaac ctgaaccctc tgaagctcac gctcatcgcc
     1621 agcgagctgc aggagtgcag aatctaccgc aacgagttcc agtgtctgag ggagtacttg
     1681 gaggttgcct ctgtgcagga gctctgggag ctgatcctga agcgctgggt tgaagattat
     1741 agttggcctt tgaagcacaa agagacgacc gtagacaacg tgatttcagg actgagtggc
     1801 tgggtggtgg acgtgctgtg tttgctctgc atctcccact gcgggctggc tgaggacgaa
     1861 ctgctccaga ttttggacat gatgggctac agggaccacc acaaagtgac ggcggtgcac
     1921 tgggcagcct tccgcaacgc caccaaaaac tggatccagg agaagcccaa tggcctcctc
     1981 tacttccagc accagtccct acggaatgcg gtggagcaca agatgctggg tgtaaccatt
     2041 tcggtgagag agagcaatcc aaatgtgtcc cagaacagca cgaatcacaa gaaggtacac
     2101 ttccaccagg tcctgatgaa gtacttccaa cggcaaacca tcttctggag agtgtatcag
     2161 gagctaccgt ggcacatgaa gatgagtggg tattgggaag gcctgtgtgg cttcatcacg
     2221 agccccatca tcacagactt catatcaaaa atccaaaacc cgagtttgtg gaccaggctg
     2281 caccttgtcc actactggga tgtgctactg gaagccggca gtgacgtatt ggaggctttt
     2341 ctgctctcgg ctgccaagat agaagcggaa gactcccaga aactcaagaa gcggaccacg
     2401 ctctcagtgt tggagtgcag tctgttcgag atcaccgctg ctgataaagg cagaatgata
     2461 ctctttatcg gaagtttcct gaagcttatg ggcaagatca acgaagcaga aaagctgttc
     2521 ttgagtgtcg aggacatgtt gctacagagc ccatccatga cagagatgct cctcaaggct
     2581 cagaacgcca ttggagaact gtatcttgac atcgggatga tgcagaaggg actcacgtat
     2641 tttcagaaag cttggtcaaa tctgctgcgg ttcacactca gcgacctcaa aatcagccag
     2701 gaactgatga agcagaaagt caaagtgatg aataacctgg ccaaatcggc gtctgaggaa
     2761 ttcttaaaag aaaaccatgt tctggaatac gccactgaag tctccaagta cgtgatggac
     2821 aacccccgtg atcaggctac catgagatat actgaaggtg ttctcatgtt ggcttctgga
     2881 aacgcggccc ttgcaaaact caagtttcaa gagtgtttaa atatcagaag acggctattt
     2941 ggcaataaaa acatactagt tggagaaatc atggaattct tagcagattt gctatttttt
     3001 cttctaggag aaaatgaaaa atctcaaagg aagcaagcaa ttgaatatta caaacaagta
     3061 ataaaaatca aggaaaaggc agattctgtg gccacctgca agctcgtgag gaagcaacta
     3121 aacataagcc tcagtgacac cttgtgtaaa ctagcgggcc agctgttgtc aggtgacttc
     3181 tgccatcatg ccacaatgga ggcggtcagc tatttgtaca ggtcacttga tttaagggca
     3241 gctcacctgg ggccttccca cgcctccatc gagggaatac tacaccttct gagggaaatc
     3301 cagaggtccc ggggcaggag gtcctggcct caaggcatga accagcttta tcctgaaggt
     3361 tctagctgtg gcttttcatt gtgggagaac ttgcctaaat taaacttcca cagcgcccag
     3421 agttctgaca cagtgaacac tgcaatgtgt atgaatatac ataggtttca gagagctaaa
     3481 agcacagagc cttctctggt ttcagataaa gcaaaatatt ttcccggcag aggaaagaag
     3541 accctgaccc caattctgtc catgtctgcc gaggaaaagg cccaaaattc acaaatacgg
     3601 aatagtctaa gaaagcaacc tccaaggaag aagggagtct atcccctgaa gacgtactcc
     3661 ctcattgaca agaacggttc ggtgagactc tcaaggcaga gggttttttc tgctgagttg
     3721 gggagcggaa ggagcctgat caattcgatt taccgtcaac cgctgcgagc acctcttagt
     3781 gcagacaatc cctggaagtc catatccgaa ctggtgtcag aaaagtggct ctttcacact
     3841 ccgcactact gcttcactcc tcagaagtca gtcttcccaa gaagatctca aatcgaaaca
     3901 aaaatgctga agacctcaca tgactttgac aaggaataaa agtaatgttg ggctgttttg
//
