LOCUS       NM_001191906            2309 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus tetratricopeptide repeat domain 39D (Ttc39d),
            mRNA.
ACCESSION   NM_001191906 XM_345624
VERSION     NM_001191906.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000006.1.
            
            On Jul 17, 2010 this sequence version replaced XM_345624.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CK470851.1, SRR26643293.33700.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-176               JAXUCZ010000006.1  20563578-20563753   c
            177-2309            JAXUCZ010000006.1  20554991-20557123   c
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..2309
                     /gene="Ttc39d"
                     /gene_synonym="RGD1311615"
                     /note="tetratricopeptide repeat domain 39D"
                     /db_xref="GeneID:366531"
                     /db_xref="RGD:1311615"
     exon            1..176
                     /gene="Ttc39d"
                     /gene_synonym="RGD1311615"
                     /inference="alignment:Splign:2.1.0"
     exon            177..2309
                     /gene="Ttc39d"
                     /gene_synonym="RGD1311615"
                     /inference="alignment:Splign:2.1.0"
     CDS             290..2104
                     /gene="Ttc39d"
                     /gene_synonym="RGD1311615"
                     /codon_start=1
                     /product="tetratricopeptide repeat domain 39D"
                     /protein_id="NP_001178835.1"
                     /db_xref="GeneID:366531"
                     /db_xref="RGD:1311615"
                     /translation="MSRYQRHEDNDEYLLNTLSLSEGETERMARVTRSVNLRDSETED
                     KFEDAHEIIPVATTMSLLSSLEECTTGLYLFLNNRFSDAINLIHPWSKNSSYHALIYS
                     MFMVVKAILTFEPQDIQIGMNAAKEALKTCNNFRKKPRIMTLSRLVSRQGIKSIKEEE
                     LHAEVCYAECLVLKSAITFIQDDSLLNFLKSGVNVGSSYQIYKDCQQVLELMPENQSK
                     THRHLNGGIKFGVGVFNLMFSLVPPKSLKLLNMVGYSGDREVGLALLHDSASEPHINN
                     ILSVFTLLFYYNYVRVVVGVEKASTAATESLFLVYLEKFPNCVVLKFFRARFNMLNGN
                     FESAKLKLQECIITQNEWKQVHHLCYWELMWCHIFLQNWKQAYNYANLLFQHSRWSKA
                     IYTYSKAIILALLPPDSVDSENESLSSYFLRVDSLRIKFLGSSVPIEKFIAEKSQRYG
                     TTTGWFTAQPLLEFIYAWSGFRVMSKKIELISSWLMIIDKGKELLNENPNEEYGVDDM
                     SLLNLLKGLCLKHLGKHLKAEHYFIRVIRKERSLKYDHYLVPYSYYELGMLHYLKGDY
                     TNATKNLDNIKNYKDYSMEARLQFRAHIALEQIAKLEK"
ORIGIN      
        1 ccttttatct cttcatttta atctaggaac tgacagcgac agtaacctta gtacgggtac
       61 attagaccgt tctgtgaaag tctgtaaaat ttaaacgctg atgtcgctgt cgccaccttt
      121 cggtttgggg tacctggcct agtctgctgt tcagtgatct ttaaggctca acagagcaac
      181 acttcagagt gagctttgtg tggaagaaga gaccccagtc aggagtgcag cagctactca
      241 cagtgcaact ccacctcaga tattcctacc tctaaccaag gaagcaaaca tgtcacggta
      301 ccaaagacat gaggacaatg acgagtacct gttaaatacc cttagtctga gtgaaggcga
      361 aactgaaaga atggcaagag taactagatc agtcaatctc agggacagtg aaacagagga
      421 caagtttgag gatgcccatg aaattatccc tgtggcaaca acaatgagcc tcttgtcctc
      481 cttggaagaa tgcacaactg gattgtattt gtttctaaat aacagattct cagacgccat
      541 caatcttatt cacccatggt caaaaaacag ttcctatcat gccctaatat acagtatgtt
      601 tatggttgtc aaggccatcc tcacttttga gccacaggat atccagatcg gaatgaatgc
      661 tgcaaaggaa gctctgaaaa cctgcaacaa tttccggaaa aaacccagga taatgacttt
      721 atctcgccta gtgagtaggc agggaataaa gtctatcaaa gaggaggagt tacacgcaga
      781 agtatgctat gccgagtgtc tagtcttgaa gtctgccata acgtttatac aggacgacag
      841 tttgctgaac ttccttaaaa gcggtgtcaa tgttgggtca agctatcaaa tatacaaaga
      901 ctgccagcag gtcttagaac ttatgccgga gaaccaaagt aaaacccaca gacacctaaa
      961 tggagggata aaatttggag ttggagtatt caatctgatg ttttcacttg ttccaccaaa
     1021 atcacttaaa cttctcaata tggttggcta ttctggagac agagaagtgg ggctggcttt
     1081 gcttcacgac agtgcatcgg aaccccatat aaataacatc ttaagtgtgt tcactcttct
     1141 cttttattac aactacgtgc gtgtagttgt tggtgttgaa aaggcttcta ctgctgctac
     1201 agagagtctc ttcctggtct acctggagaa attccccaac tgtgttgtac ttaaattttt
     1261 tcgtgcacgt tttaacatgc taaatggaaa ttttgaaagt gcaaagttaa agttacaaga
     1321 gtgcattatt actcagaatg aatggaagca ggttcatcac ctctgttact gggaactcat
     1381 gtggtgccat atttttttgc agaattggaa gcaggcatac aactatgcca atctattgtt
     1441 tcaacacagc aggtggtcta aggcgatcta tacatacagc aaagccataa tactggcctt
     1501 gcttcctcct gattccgtgg actcagaaaa cgagagcttg agctcctact tcttacgtgt
     1561 ggatagcctg agaatcaaat ttttaggctc ttctgtgccg atagaaaagt ttattgctga
     1621 gaagagtcag cgctatggta ctacaacggg ctggtttaca gcacagcccc ttctggaatt
     1681 catctacgcc tggagtgggt tccgagtcat gagcaagaaa atagagctta tttcaagttg
     1741 gctaatgata attgacaaag gaaaagagct tttgaatgag aatccaaatg aggagtatgg
     1801 tgtggacgac atgagcttgc taaatttgct gaaaggcctg tgcctgaagc acctgggcaa
     1861 acacctgaag gctgaacact acttcatccg tgtgatcagg aaggaaaggt cattaaagta
     1921 cgaccactat ctggtgccct atagctacta tgaactggga atgctacact atctgaaagg
     1981 agactatact aatgcaacca aaaacctcga caacataaag aactataagg actattccat
     2041 ggaggcccgg ctacagttta gggctcatat tgcccttgaa cagatagcta aattagaaaa
     2101 gtgattctta atccagtgtg cttctgtgta gtatgagtgg aatatctgca atttgtcaag
     2161 taattggtgg gtagaaaagg aattcctctg tgaaaagcag aagtccaagc ggcaactgcc
     2221 aagaccctgc taagtaacta agaaagggac acgccattgc tttgccctct ctcctcctcc
     2281 ttccccataa aatgcaatgc tcggaccaa
//
