LOCUS       NM_001415826            2327 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tetratricopeptide repeat domain 39A (Ttc39a),
            mRNA.
ACCESSION   NM_001415826 XM_003749994
VERSION     NM_001415826.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 3, 2023 this sequence version replaced XM_003749994.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.600926.1,
                                           SRR22582419.2207963.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               JAXUCZ010000005.1  129394294-129394397
            105-209             JAXUCZ010000005.1  129402722-129402826
            210-341             JAXUCZ010000005.1  129411020-129411151
            342-418             JAXUCZ010000005.1  129412134-129412210
            419-486             JAXUCZ010000005.1  129412569-129412636
            487-551             JAXUCZ010000005.1  129415858-129415922
            552-651             JAXUCZ010000005.1  129417625-129417724
            652-717             JAXUCZ010000005.1  129418398-129418463
            718-826             JAXUCZ010000005.1  129420152-129420260
            827-894             JAXUCZ010000005.1  129420684-129420751
            895-954             JAXUCZ010000005.1  129420831-129420890
            955-1116            JAXUCZ010000005.1  129422058-129422219
            1117-1208           JAXUCZ010000005.1  129427587-129427678
            1209-1329           JAXUCZ010000005.1  129429074-129429194
            1330-1441           JAXUCZ010000005.1  129430661-129430772
            1442-1556           JAXUCZ010000005.1  129431140-129431254
            1557-1673           JAXUCZ010000005.1  129431923-129432039
            1674-2327           JAXUCZ010000005.1  129432464-129433117
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..2327
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /note="tetratricopeptide repeat domain 39A"
                     /db_xref="GeneID:298366"
                     /db_xref="RGD:1311126"
     exon            1..104
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     CDS             67..1797
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 39A"
                     /protein_id="NP_001402755.1"
                     /db_xref="GeneID:298366"
                     /db_xref="RGD:1311126"
                     /translation="MTTASGPGDLPAGSPVSSLHEALDQCMTALDLFLTNQFSEALSY
                     LKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQSLCQRHRRKSSVTDS
                     FSSLVHRPTIDQFTEEEIHAEVCYAECLLQRAALTFLQDENMVSFIKGGIKVRNSYQT
                     YKELDSLVQSSQYSKGESHRHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKD
                     YGLLQLEEGATGHSFRAVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPK
                     GAIFLFFAGRIEAIKGNIDAAVRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKM
                     AYFYADLLSKENSWSKATYIYMKAAYLSMFGKEDYKPFGDDEVELFRAVPGLKLKIAG
                     KSLPTEKFAIRKSRRYLSPNPISLPIPALEMMYIWNGYAVIGKQQKLTDGMLAVITKA
                     EEMLAMGPENEYSADDDCLVKLLKGLCLKYLGRIQEAEENFRSISANEKKIKYDHYLI
                     PNALLELALLFMEQGRNEEAIKLLDSAKQNYKNYSMESRTHFRIQAATLQARSSLGDG
                     SRSPVSSVSL"
     exon            105..209
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            210..341
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            342..418
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            419..486
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            487..551
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            552..651
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            652..717
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            718..826
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            827..894
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            895..954
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1116
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1208
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            1209..1329
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1441
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            1442..1556
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1673
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
     exon            1674..2327
                     /gene="Ttc39a"
                     /gene_synonym="RGD1311126"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccgccgcg tcgctgggat ccggccgcag cacctgggct gcgcctggcg tccggcgcac
       61 gcagcgatga ccacggctag cggcccgggc gacctgcccg cggggtctcc ggtgagcagc
      121 ctccatgagg ccctggacca gtgcatgaca gccctggacc tcttccttac caaccagttc
      181 tcagaagcac tcagctacct caaacccaga accaaggaga gcatgtatca ctccctgacg
      241 tatgccacca tcctggagat gcaggccatg atgaccttcg acccccagga catcctgctt
      301 gctggcaaca tgatgaagga ggcgcagtcg ctgtgtcaga ggcaccgaag gaagtcctct
      361 gtgacagact cgttcagcag cctggtgcac cgtcccacca ttgaccagtt cacagaagag
      421 gagatccacg cagaggtctg ttatgcagaa tgcctactgc agagagcagc cctgaccttc
      481 ctgcaggacg agaacatggt gagcttcatc aagggtggca tcaaagttcg gaacagctac
      541 cagacttaca aggaactaga cagcctcgtc cagtcctcac aatactcgaa gggtgagagc
      601 cacagacact tcgaaggagg ggtgaagctc ggtgtagggg ccttcaacct gacgctgtcc
      661 atgcttccca ctaggattct gaggctactg gagtttgtcg ggttttcagg aaacaaggac
      721 tacgggctgc tgcagctgga ggagggcgcg accgggcaca gcttccgcgc agtgctgtgc
      781 gtcatgctgt tgctgtgtta tcacaccttc ctcaccttcg tgctcggtac tgggaatgtc
      841 aacatcgagg aggcagagaa gctgctgaag ccctacctga accgataccc caagggcgcc
      901 atcttcctgt tctttgctgg gcggattgaa gctatcaaag gaaatattga tgctgctgtc
      961 cggcggtttg aagagtgctg tgaggctcag cagcactgga agcagtttca ccacatgtgc
     1021 tactgggagc tgatgtggtg ctttacctac aagggtcagt ggaaaatggc ctacttctat
     1081 gccgacctgc tgagcaagga gaactcctgg tccaaggcca cctatatcta catgaaggct
     1141 gcctacctca gcatgtttgg gaaggaagac tacaagccat tcggggacga tgaagtggag
     1201 ttgttcaggg ctgtgccagg cttgaagctc aagattgctg ggaaatctct acccacagag
     1261 aagtttgcta tccggaagtc caggcgctac ctctccccca accccatctc cttgccaatc
     1321 cctgctctgg agatgatgta catctggaac ggctatgctg tgattgggaa gcagcagaag
     1381 ctcactgatg ggatgctggc agtcatcacc aaagctgaag agatgctggc catgggccca
     1441 gagaatgagt actcagcaga tgacgactgc ctggtcaaat tgctgaaagg cctatgtctg
     1501 aaatacctgg gccgaatcca agaggcagag gagaatttca ggagcatttc tgcaaatgaa
     1561 aagaaaatta aatatgacca ttacttgatt ccaaatgctc tactggagct ggccctgcta
     1621 tttatggagc aaggcagaaa tgaagaggcc atcaaactcc tagactctgc aaagcaaaac
     1681 tacaagaact actccatgga gtcaaggaca cattttcgga tccaggcagc cacactgcag
     1741 gccagatctt ccctaggaga cggcagcaga tccccagtct catcagtgtc cctgtagctt
     1801 tctgcagcac tcttgggctg gacagagctc ctggaaacat ttcaaaagat cacctcccct
     1861 accctgccct tccttggggt ccacctggtg ctccagtggg attgcacaag aatgtctgtg
     1921 cagaagcaaa gacagccttt ttaccagtgt ggccaaagcc ttcacacata cgggtacctg
     1981 ttttacactg tgatgtttaa gagaatgtat gaacagttta catttcttta gaatacattg
     2041 atgggattat agttggtgtt taaaaaaaac ctaccccccc aaaacaaaca aaaccctcta
     2101 actgcctgtt aatctgttta cttcctgatc tggaagtaat ttccctactt gttatccaag
     2161 gccaaactgc ttttcaaacc tcagcttttg aggataggag ttcctagcat ctgagacttt
     2221 ggcttcaaag ttctacattg caaattccag gacagccaga actacacaat gagacactgg
     2281 gtctaaaaaa aataaaacaa aacaaaacaa gttgctaaca tttaaaa
//
