LOCUS       NM_001130499            1704 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus tetratricopeptide repeat domain 38 (Ttc38), mRNA.
ACCESSION   NM_001130499 XM_001078231 XM_235549
VERSION     NM_001130499.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Principe S, Jones EE, Kim Y, Sinha A, Nyalwidhe JO, Brooks J,
            Semmes OJ, Troyer DA, Lance RS, Kislinger T and Drake RR.
  TITLE     In-depth proteomic analyses of exosomes isolated from expressed
            prostatic secretions in urine
  JOURNAL   Proteomics 13 (10-11), 1667-1671 (2013)
   PUBMED   23533145
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473950.2.
            
            On or before Jul 27, 2008 this sequence version replaced
            XM_001078231.1, XM_235549.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ210197.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132302, SAMD00155325
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1704
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /note="tetratricopeptide repeat domain 38"
                     /db_xref="GeneID:300125"
                     /db_xref="RGD:1306041"
     exon            1..107
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..1484
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 38"
                     /protein_id="NP_001123971.1"
                     /db_xref="GeneID:300125"
                     /db_xref="RGD:1306041"
                     /translation="MSLRDCQAWKDAGLPLSTTSNEACKLFDATLTQYVKWTNDKSLG
                     GIEGCLSKLKAADPTFAMGLAISNGLVLIGTGTSVKLDKDLDLAVKTMVEFSQTQTLT
                     PRERLHVSAVEMFAKGNFPKACELWEQILRDHPTDMLALKFSHDAYFYLGYQEQMRDS
                     VARVYPFWTPDTPLSSYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAH
                     IHEMRAEIKDGLEFMQHSEGHWKDSDMLACHNYWHWALYLIEKGDYEAALTIYDSHIL
                     PSLKASGAMLDVVDSCSMLYRLQMEGVSLGQRWQAVLPMTKKHTRDHILLFNDAHFLM
                     ASLGAQDLQTTQELLTTLQEASKSPGENCQHQLAKDVGLPLCQALVEAENGNSDRVIE
                     LLLPIRYQIVQIGGSNAQRDVFNQLLIHAALTCTSSVHKNVARSLLMERDALKPNSPL
                     TERLIRKATAVHLMP"
     exon            108..185
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            186..267
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            268..439
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            440..613
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            614..689
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            690..809
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            810..869
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            870..908
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            909..990
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1156
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            1157..1316
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1390
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
     exon            1391..1704
                     /gene="Ttc38"
                     /gene_synonym="RGD1306041"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caataacacc cccagttccc cagcggacct cagaaactcc aaaagctttg accggtgctg
       61 tcaccctaca gaccaaatct ataatcatgt cactgagaga ctgccaggcg tggaaggatg
      121 ctgggctccc actctcaacc acaagcaatg aagcctgcaa gctgttcgat gccaccttga
      181 cccagtacgt caagtggacc aatgacaaga gtcttggtgg catcgagggc tgcttgtcaa
      241 agcttaaggc agcagatcca accttcgcca tgggccttgc catctctaac ggccttgtgc
      301 tcattggcac gggaacctcc gtgaagctgg acaaagacct ggacctggct gtgaagacca
      361 tggtggaatt ttctcaaacc cagactctga cgccccggga gcggctgcat gtgtctgcgg
      421 tggagatgtt tgccaagggg aacttcccca aagcctgtga actctgggaa cagatcctcc
      481 gggaccaccc gacagacatg ctggccctga agttttccca cgatgcctac ttttacctgg
      541 gctaccagga gcagatgcgc gattccgtgg ctcgagttta ccccttctgg acccctgaca
      601 ccccccttag cagctatgtg aaagggatct attctttcgg actgatggaa accaacttct
      661 atgaccaggc acagaagctc gccaaagagg ctctatctat cgagcccaca gacgcgtggt
      721 cagtgcacac tgtggcccac atacacgaaa tgagagcaga gatcaaagat gggctggagt
      781 tcatgcagca ttccgaaggc cactggaagg actccgatat gctcgcctgc cataattact
      841 ggcactgggc cctgtacttg attgaaaagg gagactacga ggcagcacta accatctacg
      901 acagccatat cctccccagc ctgaaggcca gtggcgccat gctggatgtg gtggacagtt
      961 gttccatgct ctaccgtctt cagatggaag gggtgtccct tgggcagcgg tggcaggctg
     1021 tactacccat gaccaagaag catacccggg accacatcct tctgttcaat gatgcgcact
     1081 tcctgatggc ctcgctgggt gcacaggacc tccagaccac gcaggagctg ctgaccaccc
     1141 tgcaggaggc cagcaagtcc ccaggggaga actgccagca ccagttagcg aaagacgttg
     1201 ggctgcccct atgccaggcc cttgtggagg ctgagaacgg aaactctgac cgagtcatag
     1261 aacttctcct gccaatccga taccaaatcg tccagattgg gggcagcaat gcccagagag
     1321 atgtcttcaa ccagctgctg attcatgcgg ccctcacctg cacctccagc gtccataaga
     1381 atgtggcccg gagccttctg atggagcgtg acgccttgaa acccaactca cccctgacgg
     1441 agcggctgat ccgcaaggca acagctgtcc atcttatgcc gtgatggcca gcagggccct
     1501 ggcctgcagc tcagcactga cctcctggca ttagattggc tgcctggttg ggataggaag
     1561 tagctgggtc tgttcatcag aggataaagt ttagtcccag cagaactccc caaatcagta
     1621 gtttggtaga aacagggaaa acaagttaat tttgagtgct tttcggaact cccctcaggg
     1681 ccaacatgct tttttaagcc tcca
//
