LOCUS       XM_039111371            5248 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 34
            (Ttc34), mRNA.
ACCESSION   XM_039111371
VERSION     XM_039111371.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111371.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5248
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5248
                     /gene="Ttc34"
                     /note="tetratricopeptide repeat domain 34; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:366517"
                     /db_xref="RGD:1304840"
     CDS             211..3405
                     /gene="Ttc34"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 34"
                     /protein_id="XP_038967299.1"
                     /db_xref="GeneID:366517"
                     /db_xref="RGD:1304840"
                     /translation="MSAQDLVACLCQEGDKHLALGELPLATAFYLAAFSCHAPSAVRH
                     VRAVLTESPGAPVVATLEAWCRGNSQIPAIHWDGMAVVSLTGTLASAFLGAICPDHPA
                     TVLYPLAGLLAQGRHVEVVQRCNTLLDAHSQQALELQLMRALAWVLSVDQAREGIAAY
                     LQNFASSADRTVAFIRSHQQPYLPRLLGTLQNYLSGHLKTSASQQEANCRGLLEALDP
                     RGSWMGAMSPEALLHRGRFEDCQAACSRDLQPDSTGSRPQGEHLAALLVTRAAATFFQ
                     DGPVGDMLRDLHEAFSESPIGARRQFQALLSSEDRERLQAQAKEAADLGFARFLEAVR
                     SRVELRRDADRELLVPVTRALRVLLRVAPARRRPALGTRLAECLLLAGDVAGARAQCE
                     RLLRPRRPGERAGNHTGEHAPLLALRGFCALHAGDAQRAREDFQAVVERAAPHAGGCV
                     RALCGRGLLRVLAGSAFLGALDYVTACRLRPEEALLVAKAYVPWNQRGLLLTVLREEG
                     RKMLLRSPSYAVKAAQAQEGDAYGVYQLATLLTEMDAGDETSCLLAVDALYRLGRLED
                     AHKSLLVALSRRPQAAPVLVRLALLQLRRGFCYDANQLVKKVAQSGDTACLQHTLDIF
                     RREDLQLLQDHCHTRALSILRARPGGSDSEAHTREAIAYLSLAIFTAGSRASESLLVR
                     ARCYGLLGQKKTAMFDFNSILREEPGNVKALCGRALVHLALDQLQEAVDDMISALKLD
                     PGTVITEILSLKTEVQLPLTQGLYTRSRALLNQCLDAGVPLREEDTQGLLATGEALIR
                     INAAQSSWHLLLTDILTGLGKYQEAGTHLQEALHLTPSSEATQARRGLLQLKKGDVSA
                     AARDLRCLAEIDTQDLSFLLRLLESAERQSLMQTAAKEASNLLDLGNPGQALSYCSLA
                     ILAGGSSPYHLRLRMACLTQLQEYDRALRDLDRVLYQPTEDSDLPRRTEDLCTRGRLL
                     LSLGDKDGAAGAFTQALALAPAQAQSSLLEQPGRATTASVFLIHGQRCLEKQHFEEAW
                     TAVRNGLLVDPSHSGLKKLKLRTRKEAASGCRLH"
ORIGIN      
        1 cttctgtgtc tacagtgttg ggccagtgtc tctaaaggcc cagagcccct ggggctgacc
       61 agcagctgca cccaccaccc ccgaacccag cctaataagg aatttgagtc atcagagcct
      121 ttccatgccc agacctggct ggttcagctt gtgagtgtga gcagggtacc caggaagacc
      181 gaacgtggac cagaggggac tgagaccgtg atgtcagctc aggatctcgt ggcctgcctc
      241 tgtcaggagg gggacaagca tctggccctg ggggagctgc ccttagccac agctttctac
      301 ctggctgcct tcagttgcca tgccccttca gctgtacggc atgtacgggc tgtcctgact
      361 gagtctccag gggcacctgt ggtggccacc ctggaggcct ggtgtcgtgg gaacagccag
      421 atccctgcta tccactggga tggcatggcg gtggtctccc tgactggaac actggcctct
      481 gcttttcttg gtgccatttg cccggatcac cctgctactg tcctgtaccc tttggctggc
      541 ctgctggccc aagggcgtca cgtggaagtg gtgcagcgct gtaatacact gttggatgca
      601 cactcccagc aggccctgga gctgcagctg atgcgggccc tggcctgggt cctgtctgtg
      661 gaccaggcca gagaaggcat agctgcctat cttcagaact ttgcctccag cgcagaccgg
      721 acagtggcct tcatccgtag ccaccagcag ccctacctcc ccaggctgct tggtactctc
      781 cagaactacc tctcaggaca cctgaagacc agcgccagcc agcaagaggc caactgccgg
      841 ggacttctgg aggccctgga ccccagaggc agctggatgg gtgccatgtc accggaagct
      901 ctgcttcata gaggcaggtt tgaggattgc caggcagcgt gcagccggga ccttcagcct
      961 gactcaacag gaagtagacc ccaaggtgag cacctggccg ccctgctggt cacccgcgcg
     1021 gccgccactt tcttccagga tggcccagtc ggggacatgc tgcgggacct acatgaggcc
     1081 ttcagcgaga gccccattgg cgcgcggagg cagttccagg ccctgctgtc ctccgaggac
     1141 cgcgaacgcc tgcaggcaca ggcaaaggag gccgcggacc tgggcttcgc ccgcttcctg
     1201 gaggctgtga gaagccgggt cgagctgcgc cgggatgcgg accgcgagct cttggttccc
     1261 gtgacccgcg cgctccgcgt cctgctccgc gtggcacccg ccagacggcg acctgcgctg
     1321 ggcacccgcc tagcagagtg cctgctgctg gccggggacg tggcgggagc tcgcgcgcag
     1381 tgcgagcgcc tcctccggcc caggcgtccg ggagagcgcg cgggcaacca caccggagag
     1441 cacgcgccgc tgctggcgct gcgcggcttc tgcgcgctgc acgcgggcga tgcgcaacgc
     1501 gcccgcgagg acttccaggc ggtggtggag cgcgcggcgc cgcacgcggg aggctgcgtg
     1561 cgcgcgctgt gcggtcgagg gctgctgcgg gtgctggcgg gcagcgcctt cctgggcgcg
     1621 ctagactatg tcacggcttg ccggctgcgg ccggaggagg cgctgctggt cgccaaggcc
     1681 tacgtgccct ggaaccagcg agggctgctg ctgactgtgc tgcgggagga gggccgcaag
     1741 atgctgctgc gctcgccaag ctatgcggtg aaggctgcgc aggcgcagga aggggatgcc
     1801 tacggtgtgt accagctggc caccctgtta acggagatgg atgcagggga tgagacttcc
     1861 tgcctcttgg cggttgatgc cctgtaccgc ttgggtcgcc tggaggatgc tcacaaatcc
     1921 ctgctggtgg ctctttcccg gaggccccag gcagcccctg tgctggtgcg gctggccctg
     1981 cttcagctgc ggaggggctt ctgctatgat gccaaccagc tagtaaagaa ggtagcccag
     2041 tctggagaca ccgcctgcct ccagcacacg ctggacatct tccgtcgtga ggacctgcag
     2101 ctgctgcaag accactgcca cacacgggca ttaagcatcc ttcgggcacg gccaggtggg
     2161 tcggacagtg aggcccacac cagggaagcc atcgcctacc tctctttggc catctttact
     2221 gcagggagta gagccagtga gtccctcctt gtccgagccc gctgttacgg gctcctgggt
     2281 cagaagaaga ccgccatgtt tgatttcaac tctatactcc gggaggagcc ggggaatgtg
     2341 aaagctctgt gcggacgagc tcttgtgcat ctggccctgg accagctgca ggaagctgtg
     2401 gatgacatga tctctgccct gaagcttgac ccgggtactg ttatcactga gatcctctcc
     2461 ctgaagacag aagttcagtt gcccctgacc cagggcctct atacccgctc ccgggccctc
     2521 ctgaaccagt gtctggatgc tggagtgccc ctcagggaag aggacaccca gggcctcctg
     2581 gccacggggg aggcactgat tagaatcaat gctgcacaga gcagttggca cttgcttctc
     2641 acagacatcc tcacagggct gggcaagtat caggaggctg gcacccactt acaagaagcg
     2701 ctacacctca ctccatcatc agaggctact caggcccggc gaggcttgct ccagcttaaa
     2761 aagggagatg tgtcagctgc tgcccgtgac ctgcggtgcc tggcagagat agacactcag
     2821 gacctcagct tcctgttgcg tctccttgaa tccgcagagc ggcagagtct catgcagacc
     2881 gctgccaagg aagcaagcaa cctcttggat ttagggaatc cggggcaggc actgagctac
     2941 tgttctttgg ccatcctggc gggaggcagc agtccttacc acctgcgtct ccgaatggcc
     3001 tgcttgaccc agctgcagga gtatgaccgg gcactcaggg acctggaccg ggtgctgtat
     3061 cagcctacag aggacagcga cctgccgaga cggacagagg atctctgcac ccggggtcgc
     3121 ctgcttctga gcctgggcga taaggatgga gccgcggggg ccttcaccca agctttggcc
     3181 ctggcaccag cccaagctca aagcagcctg ttggagcaac caggccgggc cacgacagcc
     3241 agtgtgttcc tgatccatgg ccagcgctgc ctagagaaac agcactttga ggaggcctgg
     3301 acagcagtcc ggaatggact cctggtggac cccagccaca gtgggctaaa gaaattgaag
     3361 ctgaggactc gcaaggaggc ggcctctggc tgcagactac actaaccagt ggctaactgc
     3421 ttgactcctc gaccagctcc taagttctca cctagggtgt acctggctcc ccagatccaa
     3481 gagtggctct ctctgctggc catttttgcc tgtcctttgc tgtaggatta gaggagaaac
     3541 cttctctttg tgcagaacag ctgtcctagg tggctcacac acccactacc ttgggcagcc
     3601 ccagcgctct gctcacactt gggactctgc cttcagagca gacacaggca ggatcagggt
     3661 tagcacctca gggcctagca ggagaggtgc tggcccaggg agacctccct ggggaagagg
     3721 aggctgctta gagcaggcct ggatttgttc ccacattagc caaggtccag attcctggct
     3781 gcctatgtgc agctgacctt tcaaggttgt tctccaggaa cccagtgacc gaacgtgcca
     3841 aacaggcaca gcccggacag ccccttccct ccaccaagcc ctgaaccctc ataaggttga
     3901 gagaccccag gcttccactg ggcctgcgcc tgtccaagag gtcagcctga gatttggtgc
     3961 atccgagctg agacagcgtt acgtgggcaa acttcccatc cattcttatc cctgccagtg
     4021 aggctccagc ctgtcacctt tactaccacc atcaccaaaa ctgtcacagg ggccaggctg
     4081 gagtactttg ctctctcccc acaatgggca ggactgcttg gtatggcgtg gcaaacccct
     4141 tcctggcttc tccagtgggg gtaagggcag ggtctgaatt ctgagacttc cccctctgcc
     4201 ccgggctgcc ttccatgacc cttcctcctg ctgtcttttt aacaccatgg aaacccacat
     4261 ctcacctcct acacagactg accccatgct cagatacagg atccctggtc ctgcctgtcc
     4321 ctgggcagtg atgaagtgac tgggtaggat tagcagcccc cttcctgtga aaaggactcc
     4381 taataactcc cacctgcctt gtcgtccctc catagtgtgg gagccctcct tcctgttgct
     4441 gtaatacctg agacctgcca agctatgcct ccatgtattc cacaggagga ccaggaagag
     4501 cagggagccc agaaagactc ctctgtgagg cacaccctgg ttcctgccct ccttccccac
     4561 catgatctct agaataacct aatgcacgtc tccacaaggt taccctttca cccacccacc
     4621 tcacatccat ctctccactt gtgcatccct tggcactgta cacacttgca gacacccagc
     4681 agcaccaagg tcaaactgtt ggtcacctgg gtgtggcctg cgcatcccac tgccactttt
     4741 gcttttcagc ctaaggtgtc ctgctcatcc actcctggat gccccagccc ttgtcattcc
     4801 aaatgcgaag gtactcagac ctggcagagc tcttcccagc caccaggggc atcacccagc
     4861 acctcctgat ctcccaaggt cttagcacgg gctcacgagc acacacatac gcacacgagc
     4921 tcccctcacc cccaatctct tactgctgct ggcctgggac tttgctgcgg tctgaatgtg
     4981 tacccagaat ccgtgcactg agatcccacc accaatggga cgttagcaga ggatcttgca
     5041 ggtggggagg agttaggttg tgatggtgga gccgtaaaga acaggatccg tggcttggaa
     5101 gacccttcag cccacccacg tataagaacg gagtttggga atgtcaccta caaaccagga
     5161 tgcaggcctg tccctgtata cctaccaggg cttagccttg gacttctacc tccacagcca
     5221 tgagaaataa atctcaataa ggttccca
//
