LOCUS       NM_001013890            1930 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus tetratricopeptide repeat domain 29 (Ttc29), mRNA.
ACCESSION   NM_001013890 XM_226373
VERSION     NM_001013890.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1930)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1930)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078968.1.
            
            On Apr 20, 2005 this sequence version replaced XM_226373.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078968.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q11"
     gene            1..1930
                     /gene="Ttc29"
                     /note="tetratricopeptide repeat domain 29"
                     /db_xref="GeneID:291944"
                     /db_xref="RGD:1589777"
     exon            1..127
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            128..166
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            167..264
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     CDS             173..1588
                     /gene="Ttc29"
                     /note="TPR repeat protein 29"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 29"
                     /protein_id="NP_001013912.1"
                     /db_xref="GeneID:291944"
                     /db_xref="RGD:1589777"
                     /translation="MATFPPLSMTRTKLAVLARQKLPCSSKSIPRAQLIKEKDDIDYY
                     LEQNIKGLSKEEVAAHRNSYKKSICVDMLRDGFHKSFTELFSLMEQWDKLREAAQARS
                     LFWLQRPLEDQPDKLDNFYHYLTKAEAAERKGYYEEVYNNLYALACYFDNSEDKWVRN
                     HFYERCFKIAQLIKVDGGKKEAEAEAHMGLLYEEEGELLKAAEHYEAFHELTQGRLWK
                     DATGQFLNLIACESLVRTYRLLSDRMLQNRDYKQAIKILIKASEIAREGNDRSMEGEA
                     SYYLGLAHLASGEYETALSVLDRYSEISTSLDDELSLGRAYEAMAKVLQSQGEMTEAI
                     KYLEKFVVIARNNFKSLDVIQACTMLGDIYNEKGQYNKASDYFQQAFSTAMEVTKTTL
                     MDETKVHYGIARAHQMMLTMNGYIESADMNSLNCLLSWKETRTQVEYDPILGEARKAT
                     EDNIYQFPDAQEETRRSPENQ"
     exon            265..348
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            349..572
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            573..758
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            759..971
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1057
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1149
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..1273
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1502
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            1503..1569
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
     exon            1570..1828
                     /gene="Ttc29"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacgctctcg gcgtctgcac ccagccaggg caccaacctt ggatgagagt atcctgtcca
       61 gcacccaccg cctgcaggag cttagtcagg ggacacagaa ccacagtccc agagccagtt
      121 ttctgagagg agtctgagag cccaaagcag tcgattatct gcaaatcccc caatggccac
      181 ctttccccca ctctccatga ctcgtacaaa gcttgcagtc ttagccaggc agaagcttcc
      241 gtgttcttca aaatcaatcc caagggccca gttgatcaaa gagaaagatg acatagatta
      301 ttacctggag cagaatatca aagggctgtc gaaggaagag gttgctgccc acaggaactc
      361 atacaagaag agcatctgcg tggacatgct gcgagatggc ttccacaagt ccttcaccga
      421 gctcttcagt ctgatggaac agtgggacaa gcttcgggaa gctgcgcagg cgcggtccct
      481 cttctggctg cagaggcctc tggaggacca gccagacaag ttggacaatt tctaccacta
      541 cctgaccaag gccgaggctg cggaaaggaa agggtactat gaagaggtgt ataacaacct
      601 gtatgcgctg gcctgttatt tcgataactc tgaggacaag tgggtgagga atcacttcta
      661 cgaacggtgt ttcaaaattg ctcagctgat caaagttgac ggtgggaaga aagaagcgga
      721 ggcagaggcc cacatgggtc ttctttacga ggaagagggt gagcttctga aagccgcaga
      781 gcattatgaa gcattccatg aattgacaca gggacggtta tggaaggatg cgacgggtca
      841 gttcctcaac ttgatagcct gtgaaagtct cgtgagaacc tacagactgc tctcagacag
      901 gatgctgcaa aacagggact acaaacaggc catcaaaatc ctcatcaaag cttccgagat
      961 agccagagaa ggaaatgaca gaagcatgga aggagaggct tcttactacc tgggcttggc
     1021 ccacttggct tctggagaat atgaaaccgc actatcagtg ctcgatagat acagtgagat
     1081 ctccacaagc ttggatgatg aacttagcct agggagagcc tacgaagcga tggccaaggt
     1141 cttgcagagc caaggagaga tgacagaagc aattaaatac ctggagaagt tcgtcgtaat
     1201 tgcaagaaac aacttcaaaa gcctggatgt gattcaagcg tgcacgatgc tgggtgacat
     1261 ctacaatgaa aaggggcaat acaacaaggc ttccgattac ttccaacaag ctttcagcac
     1321 cgccatggag gtcacgaaaa cgacgctcat ggatgaaacc aaagtccact atgggatagc
     1381 cagagcccac cagatgatgc tgacgatgaa cggttacatc gaatctgctg acatgaacag
     1441 cctcaactgc ctgctgtcct ggaaggagac tagaactcaa gtcgaatatg accccattct
     1501 gggggaggct agaaaagcca cggaagacaa catatatcaa ttcccagacg ctcaggagga
     1561 aacaagaaga tctccagaaa atcaataaag tgaaactcca gtgactcaac atcagagcaa
     1621 gaagaaactt agctatagcc ttagacctcg ttagatagga gcacgaaaca agtgataggg
     1681 agttataaaa aagattaggg ttgcttttat tgaattttat tctgccgtga ctatggcaag
     1741 tttatgaaga tcaagtacag cttaaatgat tagaacgatc aacagttact cataaaataa
     1801 actctagaat gtctcctcat acactttaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1921 aaaaaaaaaa
//
