LOCUS       XM_039103561            1563 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus tetratricopeptide repeat domain
            23-like (Ttc23l), transcript variant X13, mRNA.
ACCESSION   XM_039103561
VERSION     XM_039103561.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1563
                     /gene="Ttc23l"
                     /note="tetratricopeptide repeat domain 23-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 long SRA reads, 5 Proteins"
                     /db_xref="GeneID:502510"
                     /db_xref="RGD:1564928"
     CDS             16..1452
                     /gene="Ttc23l"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 23-like isoform
                     X5"
                     /protein_id="XP_038959489.1"
                     /db_xref="GeneID:502510"
                     /db_xref="RGD:1564928"
                     /translation="MARAPARARGSRGLNCLAGENRTTADPICVPTVSNDTYWDFCFH
                     LSQQTRIPAQETDDLFTTCQFGETEEDTAVEEAETIDCLSIPKQKLAQSQKKINQFIN
                     EKMSTKANKELIRCFILSQIVFGKEHWKCAQALANLAYGYLTLRGLPAQAKKHAESAR
                     NTLLTWKRNTTSDKEKKEILETLVILYYTLGIAWLLQNHGKQAYIHLQKAQRNMKELK
                     ELNNGSIYEIQVSDKDLTIALGRASLAMHRMHLALAYFEKAICGVILAKGHDTSDLIS
                     LYEEIAQIEQLRKNHEQAIQYLQQAYSISVSSFTEVSPQTAEASALLAKAYAMSGESQ
                     HRDAVEIYFIRSISTYQTLGSEDYETLTTIEDFCTWLIQNGEKQEAYRLLKSTLNSCT
                     FGDCGKKVAETFYNMGSICFAKGELREAIALLRKCLMIQSLIYGSEHTKSIETKSLLS
                     LLQRASLSRWKKEATPGKKKSVCRDRTE"
     polyA_site      1563
                     /gene="Ttc23l"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ttggtgagac tcgacatggc ccgggcacca gcacgggccc gaggtagcag aggtctgaac
       61 tgcctagccg gggaaaacag aacaacagcc gaccccatct gcgttccaac tgttagcaat
      121 gacacctact gggacttctg cttccacctg tcacagcaaa ccagaatccc agcacaagag
      181 acagatgact tgttcactac ttgtcaattt ggagagactg aggaagacac tgcagttgag
      241 gaagcagaga ccattgactg tttgtctatt ccaaaacaga agttagctca gtcccagaag
      301 aagattaatc aattcattaa tgagaaaatg agtaccaaag caaacaagga gctgattcgg
      361 tgtttcatcc tctctcagat tgtttttggg aaagaacact ggaaatgtgc acaggcttta
      421 gccaatctgg cttatggtta cctgacactg agaggcctcc cagctcaggc caagaaacat
      481 gccgagtcag ccaggaacac actgctgacc tggaagcgaa acacgacctc agacaaggag
      541 aaaaaggaaa ttctggaaac tctggtcata ctctattata ctctggggat agcctggctc
      601 ctacaaaacc atggcaaaca ggcctacatc cacctgcaga aagcacagag aaatatgaag
      661 gaactgaaag aattaaacaa cggcagcatt tatgaaatcc aagtctcgga taaagaccta
      721 accattgctt tgggcagagc ctccttggct atgcacagga tgcacctggc cctggcctac
      781 tttgagaagg caatttgcgg tgttatcctg gccaagggtc atgacacatc agatctgatc
      841 agtttgtatg aagaaatcgc tcagattgag cagctgagga agaaccacga acaggccatc
      901 cagtatctgc agcaggccta ttctatcagt gtttcttcgt ttactgaagt cagcccccaa
      961 actgctgagg cgagtgcttt actagcaaaa gcttatgcca tgtccggaga atcccagcac
     1021 agggatgcag ttgagatata ttttataaga agtattagta cataccaaac cctgggctca
     1081 gaagactatg aaactcttac caccattgaa gacttttgta catggctcat ccaaaatggc
     1141 gaaaaacagg aggcttacag actgctaaag tctacgctga actcttgcac ctttggggac
     1201 tgtggcaaaa aagtagctga aaccttttat aacatgggca gcatctgttt tgccaaagga
     1261 gaactcagag aagcgattgc gctactgagg aagtgtctaa tgattcagag tctcatctat
     1321 ggaagtgagc acactaagag catagagact aaaagcctcc tttccctatt gcaaagggca
     1381 agtttatcca gatggaaaaa agaagccact ccaggaaaga agaaaagtgt atgcagagac
     1441 agaacggaat gaaggagggc aacgtctgga aggaatcaag gaatggtctc cctcatgtta
     1501 tcagggactg aaaactctac acaagatagc caacaataaa aacaaccttg ttgctagcca
     1561 aaa
//
