LOCUS       XM_003750604            5167 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tetratricopeptide repeat domain 21A
            (Ttc21a), transcript variant X1, mRNA.
ACCESSION   XM_003750604
VERSION     XM_003750604.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003750604.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003750604.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5167
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5167
                     /gene="Ttc21a"
                     /note="tetratricopeptide repeat domain 21A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 27 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:301065"
                     /db_xref="RGD:1308806"
     CDS             109..4053
                     /gene="Ttc21a"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 21A isoform X1"
                     /protein_id="XP_003750652.1"
                     /db_xref="GeneID:301065"
                     /db_xref="RGD:1308806"
                     /translation="MSSDDSSLMASIIYYCQEKYFHHVLQAANVGLERYSCDPVLQFF
                     RAYGVLGEDRIHDAISELESLQSHPDTSLCAVIALLYAHKCCDTIDAEAIQELDSSLK
                     EIRRTASGMALYYASLFLWFMGHHDKAREYVDHMLKVSSGSKEGYVLKGWVDLTSNKP
                     HVVKKSIKYLEQGTQDTKDVLGLMGKAKYFMTQQNFSGALEVVNQVTLAYSNFLPALV
                     LKMKLFLARQDWEQTIETGQRILEKDENNIDAWQILAVHELVKEGNTDRAADRVRNLI
                     KALETGEPQNPNLHLKKILAVSRLCGRHQVVHRLVSGFLERTFMATPSCALVATELGY
                     LFILQQQVKEASLWYKEAMKLEENRLAALAGSIWCQILQGQLEEAAHQLEFLKEVQLS
                     LGKSEVLVFLQALVAAKKQKLEQEATALLKEAVELHFSNMQGLALSPEYFEKLDPLFL
                     VCIAKEYLHFCPKQPRSPGQLVSPLLKQVAMILSPVVKVAPAMMEPLFVTAQVKFLSG
                     ELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNFQVRDHPL
                     YHFIKARALNKTGDYAEAIKTLKMIIKVPTSKAEEGRKSRGPSVRPSERASILLELVE
                     ALRLNGELHEATKIMQDAINEFSGTPEEMRITVANVDLALSKGNADLALNMLRGITPK
                     QPCYTEAKEKMASIYLHTRKDVRLYIGCYMELCEHLPGPHSSLLLGDAFMNIQEPEKA
                     LEVYDEAYRKNPHDASLVSRIGQAYVKTHQYAKAINYYEAAQKISGQDFLCCELAELL
                     LKLKKYHKAEKVLKQALERDSGVKDIPSLMDEVKCLLLLAKVYKSHKKEDVMETLNQA
                     LDLQSRILKRVPLEQPEMIPSQNQVAASICVQIGEHHLADKDYDSAMKSYKDALAYSP
                     TDSKVVLELAQLYLLQGQLDLCEQHCAPLLEMEQTHERAAVVLADLMFRKQNYETAIN
                     LYRQVLEKAPDNFLVLNKLIDLLRRSGKLEEAPAFFELAKKVSSRVPLEPGFNYCQGI
                     YCWHIGQPNEALRFLNKARKDSTWGQLATCYMVQICLNPDNEIVGGEAFESLVGDSNS
                     ASRKESQQHGVRTAEKLLREFYPHSESGQTQLRLLQSLCLLATREKANIEVALGAFIE
                     MAQAEKDNIPALLAMAQAYVLLKQVPKARTQLKRLAKVPWMLDEAEDLEKSWLLLADI
                     YCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYSHQA
                     NPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEYPNYPKIREEILEKAQGSLRP"
ORIGIN      
        1 caaggacgcg cgcgccttga acttccggct gtgagctggg ctgcgaattg ggcggccaga
       61 gctgggaatc ccgctcagcc gggcatcacc tgaagccggg ccgcagccat gagcagcgat
      121 gactcctccc tcatggcttc gatcatttac tactgccagg aaaagtactt ccaccacgtg
      181 ctgcaggctg ccaatgtggg cctagagagg tacagctgcg accctgtgct gcagttcttc
      241 agagcttatg gggtccttgg ggaagaccgt atccatgatg ccatcagtga gctggagagc
      301 ctccaaagcc acccagacac gtccctgtgc gcggtcatcg ctctgcttta tgctcacaaa
      361 tgctgtgaca ccattgacgc agaagcaatt caggagctgg acagcagctt gaaggaaatt
      421 cgcaggacgg ccagtggcat ggcactgtac tacgccagcc tcttcctctg gttcatgggt
      481 caccacgaca aggccaggga gtacgtcgac cacatgttaa aggtctccag tggctccaaa
      541 gagggctacg tgctcaaagg ctgggtggac ctcacctcca ataaacccca cgtcgtgaag
      601 aaatccatca agtacctgga acaaggaacg caagacacca aagatgtgct aggcctcatg
      661 ggcaaggcaa agtacttcat gacacaacag aacttctccg gggccctgga ggtggtgaac
      721 caggtcacct tggcctacag caacttcctg ccggccttag tcctgaagat gaaactgttc
      781 ctggctcggc aggattggga gcagacaata gaaaccggac agagaatcct tgaaaaagac
      841 gagaacaata tcgatgcctg gcaaatccta gcggtgcatg agctcgtgaa agaaggaaac
      901 acagacagag ctgccgaccg tgtcagaaac ctaatcaagg cgctagagac tggagagccc
      961 caaaatccaa acctacatct taagaagatc cttgcagtca gcaggctgtg tgggaggcac
     1021 caggtggtcc atcggcttgt gagcggcttc ctggagcgca ccttcatggc cacaccttcc
     1081 tgtgcccttg tggccacaga gctgggctac ctcttcatcc tacagcaaca agtgaaggaa
     1141 gcctctctgt ggtacaagga ggccatgaag ctggaggaga acaggctggc tgccttggca
     1201 gggagcatct ggtgccagat cctacagggc cagctggagg aggctgctca ccagctggag
     1261 ttcctcaagg aggtgcagct gtcacttggg aagtctgagg tgctggtttt cctgcaagcc
     1321 cttgtagcag ctaagaagca aaagctggag caagaggcca cggcgctcct gaaggaggca
     1381 gtggaactgc atttctccaa catgcagggc ctggccctga gccccgagta ttttgaaaag
     1441 ctggaccccc tctttctggt ctgcatcgcc aaggagtatc tgcatttctg cccgaagcag
     1501 ccccggtcac ccggccagct cgtgtctcca cttcttaaac aagtcgccat gatcttgagc
     1561 cctgtagtaa aggtggcccc ggccatgatg gagccactgt ttgtgacagc tcaggtcaag
     1621 ttcctctcag gagagctgga gaacgcgcag agcaccctgc agcgctgcct ggagctggac
     1681 cccacctttg tggacgctca cctcctcatg tcccagatct acctggccca gggcaacttc
     1741 gccatgtgct cccactgtct agagctgggt gtcagccaca acttccaggt ccgagaccac
     1801 cccctctacc acttcatcaa agccagggcc ctcaacaaga ctggcgacta cgccgaggcc
     1861 ataaagacct taaaaatgat cataaaggtg cccacctcaa aggcagaaga gggcaggaag
     1921 tcccgaggcc cctccgtgcg gcccagcgag cgggcatcca tcctgctgga gctagtagag
     1981 gccctccgac tgaatgggga actgcacgag gccactaaga tcatgcagga tgccatcaac
     2041 gagttcagtg gcacaccaga ggagatgcgc atcacggtcg ccaacgtgga cctggccctg
     2101 agcaagggca acgcagacct ggcactgaac atgctaagag gcatcacgcc caagcaaccc
     2161 tgctacacag aagccaagga gaagatggcc agcatctacc tgcacactcg caaggacgtg
     2221 cgcctctaca tcggctgcta catggagctt tgtgaacatc tgcccggccc ccacagcagc
     2281 ctgctactgg gtgacgcttt catgaacatc caggagcctg agaaggccct ggaggtgtat
     2341 gacgaggcct acagaaagaa ccctcacgac gcctccttgg tcagcaggat tggacaagcc
     2401 tacgtgaaga cccaccagta tgccaaggcc attaattact acgaggctgc ccagaagatc
     2461 agcgggcagg acttcctgtg ctgcgagctg gccgagctgc tcctgaagct gaagaaatac
     2521 cacaaggcag agaaggtgct gaagcaggcc ttggagcgag actccggggt caaggacatc
     2581 ccgtccctga tggatgaggt caagtgcttg cttttgttgg caaaagttta caagagccat
     2641 aagaaggaag acgtgatgga aacgctgaac caggccttgg acctccagtc ccgcatactg
     2701 aaacgggttc ctctggagca gccagaaatg atcccctccc agaaccaggt ggcagcctcc
     2761 atctgcgtcc agattggaga gcatcatctc gcggacaaag attacgacag cgctatgaaa
     2821 tcctataagg acgccctggc ctactcacct acagacagta aggtggtgct ggagctggcg
     2881 cagctctacc tgcttcaggg gcagctggac ttgtgtgaac agcactgtgc ccccctctta
     2941 gagatggagc agacccacga gagagctgcc gtggtgctgg ctgacctgat gtttagaaaa
     3001 caaaactatg aaaccgccat caatctctac cgccaagtgc tggagaaagc tccagacaat
     3061 tttttggtac tgaataaact gatcgacctg ctacgacgga gcggcaagct tgaagaggcc
     3121 cctgctttct ttgaactggc caagaaggtg tctagccggg tgcctttgga accagggttt
     3181 aactactgcc aaggcattta ctgctggcac attggacagc ccaatgaagc cttgaggttt
     3241 ctgaacaaag cccgaaagga cagcacttgg ggccagcttg ccacctgtta catggtacag
     3301 atctgtctga accctgacaa cgagattgtc ggtggagagg cttttgagag tctggtgggt
     3361 gacagcaact ctgccagtag gaaagagtct cagcagcacg gggtgcgcac tgcagagaag
     3421 ctacttcggg aattttaccc acactcggag tccgggcaga cccagctgcg gctgctgcag
     3481 agcctctgcc tgctagccac cagggagaag gcgaacatag aggtggctct gggggccttc
     3541 atcgagatgg cccaggctga gaaggacaac atccctgcac tgctggccat ggcgcaggcc
     3601 tacgtcctcc tgaagcaagt ccccaaggcc cgaacgcagc tgaagcgcct ggccaaagtc
     3661 ccatggatgc tggacgaggc cgaagacctg gaaaagagct ggcttctgtt ggcagacatc
     3721 tactgccaag gcggcaaatt cgacctggcc ttggagctgc tgcgccgctg cttgcagtac
     3781 aacaagtctt gctgcagggc ctatgagtac atgggcttca tcatggagaa agagcagtca
     3841 tacaaggacg cagccaccaa ctacgagctg gcttggaagt acagccatca ggccaaccct
     3901 gccattggtt tcaaactggc tttcaactac ctgaaagaca agaagttcgt agatgccatt
     3961 gaagtctgtc acagcgtcct gacggagtac cccaactacc ccaagatcag ggaggagatt
     4021 ttggagaaag cccaagggtc cttgaggccc tagctgtggc tgcaaggggc tccggacagt
     4081 agaagcatca gtctatggac gattcatggg gagagtagga agtgaatcag tggagaagca
     4141 agtgagaaat gcatactctc tccatttccg tatcgcttgt gcttcatttg gattcatgcc
     4201 tcctggggcc cgagagcgtc tggaagcttt atgctttttt aaggcctaag aagtaatttt
     4261 gcctggagaa ggaagacagc tggcttagcc tgtgccgggg attcctgggc cttactcaag
     4321 gaccccacat ttgctccgga ctcttgaaga catggaccag agaccccgcc cagcagagtg
     4381 atggctagga aagtacccta tagctacttc gaagtgcacc cctcccccag tcttgtcccc
     4441 agcgtctcag aactagagaa gcatggcccc tccttgccac gttgcccacc aggtctgccc
     4501 agcacagcag tgggctcaga cgggaggacc agctgtggaa ggaccccaga gctagggccc
     4561 tgtgtaagag ggagcagatt ttcaaggccc attcactgcg cttctctgtc accacattct
     4621 gttcctatgc acctccccca agctagacca cacccatttg ggacaagcca gattaccacg
     4681 gagccccatc ctccccctac atgcaaccac actttggctt ttgtaaaaga tattagccaa
     4741 ccagctcacc ttcctggatc ccacttaatg cctagggggg cagacacagt ggctactgtt
     4801 tctcagaatg gcattatggg gtcatcccag cctcagggga aggaactctg aactctgaac
     4861 tgggtatctg gaggcctgag ttctcaacat gtgctcttcc caagtgcttg ccctctctgg
     4921 gtctcagtgc cctactcttc agcaagcaat tagactagac ctgggcaggg tgtgctcact
     4981 cagtggtgca cgtgcctagc atgcacaaag ccctgggttc aacccccagc acacctggaa
     5041 ccccggcata ttggaggtgt aagcagtaaa gtcatcaggt cagagtcatc taacttaagt
     5101 gtctgaggta gtcttggggt acaccagacc atgtctcaaa agaaaaaaaa agactccatt
     5161 tcccaaa
//
