LOCUS       NM_001410278            2735 bp    mRNA    linear   ROD 12-JUN-2023
DEFINITION  Rattus norvegicus tetratricopeptide repeat domain 16 (Ttc16), mRNA.
ACCESSION   NM_001410278
VERSION     NM_001410278.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2735)
  AUTHORS   Shultz MA, Zhang L, Gu YZ, Baker GL, Fannuchi MV, Padua AM, Gurske
            WA, Morin D, Penn SG, Jovanovich SB, Plopper CG and Buckpitt AR.
  TITLE     Gene expression analysis in response to lung toxicants: I.
            Sequencing and microarray development
  JOURNAL   Am J Respir Cell Mol Biol 30 (3), 296-310 (2004)
   PUBMED   12947022
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JACYVU010000115.1 and CF107780.1.
            
            [WARNING] On Mar 25, 2024 this sequence was replaced by
            NM_001410278.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMD00132261, SAMD00132263
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               JACYVU010000115.1  9521278-9521419     c
            143-190             JACYVU010000115.1  9520984-9521031     c
            191-218             JACYVU010000115.1  9520556-9520583     c
            219-357             JACYVU010000115.1  9520416-9520554     c
            358-459             JACYVU010000115.1  9520018-9520119     c
            460-479             JACYVU010000115.1  9519816-9519835     c
            480-484             JACYVU010000115.1  9519810-9519814     c
            485-553             JACYVU010000115.1  9519740-9519808     c
            554-654             JACYVU010000115.1  9518205-9518305     c
            655-784             JACYVU010000115.1  9517997-9518126     c
            785-999             JACYVU010000115.1  9516232-9516446     c
            1000-1244           JACYVU010000115.1  9515334-9515578     c
            1245-1386           JACYVU010000115.1  9515082-9515223     c
            1387-1552           JACYVU010000115.1  9514222-9514387     c
            1553-1695           JACYVU010000115.1  9513754-9513896     c
            1696-1822           JACYVU010000115.1  9513469-9513595     c
            1823-1901           JACYVU010000115.1  9511116-9511194     c
            1902-2036           JACYVU010000115.1  9510085-9510219     c
            2037-2044           CF107780.1         442-449
            2045-2735           JACYVU010000115.1  9509388-9510078     c
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..2735
                     /gene="Ttc16"
                     /note="tetratricopeptide repeat domain 16"
                     /db_xref="GeneID:100362059"
                     /db_xref="RGD:2318922"
     exon            1..142
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..2554
                     /gene="Ttc16"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 16"
                     /protein_id="NP_001397207.1"
                     /db_xref="GeneID:100362059"
                     /db_xref="RGD:2318922"
                     /translation="MTDKSKDQRNSSASSSKMGILKELGDACSQETPKLKVPKSPEKI
                     LRRIFGTSHVFYVMTETTKRRMMGSTVPAKVREYYNQGHQCLLQETGRWLCCTSSRAL
                     HLDPKLVRGEAFIQLCDFSSALQNLRRAYFYEPEMTNYVDRGQCLYELCDYQEALYVF
                     LQASDLQPQNPSFSYRCMACLLALKRHHDCLSLLTREVKQGRASADVFILRARLYNFF
                     QKANLCYQDLRSALLLDPKHTQAKGLLQKMVDQANQSLQDASILAVQGKLHRALKCVS
                     CAIENNPLDPNFFLFRGTLRRRLQQYDPAVEDFLKALDMMTESQDNLVKQAQRQLLLT
                     YNDFAVHCYLHGAYQESVLLLNKAIRDEQNEKGLYINRGDCFYQLGNLAFAEADYKQA
                     LALSPLDEGANLRMGVLQEKMGFCQQKHRQFQTAEEHFSEAIRHNPQKPQYYLHRAKC
                     RQFLQNILGARQDVATVLLLNPNYPKMAAMMNTLFPGMTVEGALKSRVAELARLQLTR
                     MIENGPRRNYPQSIVLQRLMERQKAQAMVRSWKKEPPEIPKEEEVTIFQAPEVAKGKK
                     VRKIPRKRTSLTDSYVDQTSSGSVFSIMSISTSGPEMSTSREYMSTSHTPISSSESIL
                     PKPQKPQSSGPRTKLELTWGPKVIEVVSEYLNQNVTEITPVYGKKGSTKNAGATHDPK
                     PKTEAPKGPRKSTSRQEALERPKPTKSRSSLILKERVRRAKAVRAQGWKPKTWSSSQV
                     LTKSSSTTVHDSGRSLSSASEPPSQTPEASKDGDDSSSFTESTSTHLSSAESFTELTN
                     LLSQEPEEDRD"
     exon            143..190
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            191..357
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            358..459
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            460..553
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            554..654
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            655..784
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            785..999
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1244
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            1245..1386
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            1387..1552
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            1553..1695
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            1696..1822
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            1823..1901
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
     exon            1902..2735
                     /gene="Ttc16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agactcttgg aggcgtggcc aaatgggcgg ggcctatggg catcctggag ctggtgccta
       61 gcaacaatgg aggcagggaa ccagagagtt tgctcggccc aaaaatcagc atagaaacct
      121 ggccatgaca gacaaaagca aggatcagag aaattcatct gcctcttcct ctaaaatggg
      181 gatattaaag gagcttggcg atgcctgttc ccaggaaact ccaaaactca aggttcctaa
      241 gagtccagag aagatcctgc gacgcatctt tgggaccagc catgtgttct atgttatgac
      301 agaaacgaca aaacgaagga tgatgggttc gacggtgcct gccaaagtca gagagtacta
      361 taaccaaggc catcagtgcc tattacaaga gactgggaga tggctgtgct gtacttcctc
      421 ccgtgccctc cacctggacc ccaaactggt aagaggagag gccttcatcc agctctgcga
      481 cttctcctct gccctccaga acctccgcag ggcctacttc tatgagccag aaatgacaaa
      541 ctacgtggat cggggccagt gcctctatga gctgtgtgac taccaggaag ccctctatgt
      601 cttcctgcaa gcctccgacc tccagcccca aaacccttcc ttcagttacc gatgcatggc
      661 ctgcctgctg gccctcaagc ggcatcacga ctgcctctct ctcctcacga gggaagtgaa
      721 gcagggcagg gccagcgctg atgtcttcat cctgcgggct cggctctaca acttcttcca
      781 gaaggccaac ctctgctatc aggacctccg aagcgccttg ctcctagatc ccaagcacac
      841 acaggccaaa gggctgctcc agaagatggt ggaccaggcc aatcagtccc tccaagatgc
      901 cagcatcctg gccgtgcaag gcaagctgca ccgcgcacta aagtgcgtca gctgtgccat
      961 tgagaacaat cccttggacc ccaacttctt cctcttccga ggcaccctgc gcagacggct
     1021 ccagcagtat gacccagctg tggaagactt cctgaaggcc ctggatatga tgactgaaag
     1081 ccaggacaac ctagtgaagc aggcgcagcg ccagctgctg ctgacttaca acgactttgc
     1141 tgtgcactgc tacctccatg gtgcctatca ggagagtgtg ctgctgctaa acaaggctat
     1201 cagagacgag cagaacgaga agggcctgta catcaaccgt ggggattgct tctaccagct
     1261 gggcaacctg gccttcgcgg aggctgacta caagcaagca ctggctctga gcccactgga
     1321 tgaaggagcg aacttgcgca tgggggtgct gcaggagaag atgggcttct gccagcagaa
     1381 gcacaggcag ttccagacag cagaggagca cttctcggag gctataaggc acaacccaca
     1441 gaagccccag tactacctgc accgggccaa gtgccgacag ttcctgcaga acatactggg
     1501 ggcccgccag gatgttgcta ctgtgctgct cctgaacccc aactatccaa agatggctgc
     1561 aatgatgaac accctttttc ctggcatgac tgtggagggc gcccttaaga gccgagtggc
     1621 tgaactggct aggctccagc taacccggat gatagaaaac gggccaagga gaaactaccc
     1681 tcaaagcatt gtgttgcaac ggttaatgga acgccagaaa gcccaagcca tggtgaggtc
     1741 ctggaagaag gagcctcctg agatccccaa agaagaggaa gtgactattt tccaggctcc
     1801 ggaggtggca aagggaaaaa aggtgaggaa gatccctcgc aagagaacat ccctgacaga
     1861 cagctacgtg gaccagacct cctcaggttc tgtcttcagc attatgagca tcagcacatc
     1921 agggccagag atgtcaacca gccgggaata tatgagcact tctcacacac ctatatcatc
     1981 ctccgagtcc atactgccaa agcctcagaa gcctcagtcc tcaggaccca ggacaaaact
     2041 ggaactgacc tggggcccca aggtcatcga ggtggtttca gagtacctaa accagaacgt
     2101 cactgagatc acacctgttt atggcaaaaa gggctccacc aaaaacgcag gggccaccca
     2161 tgacccaaaa ccaaagacag aggctcccaa gggtcccagg aagagcacca gcaggcaaga
     2221 agcccttgag cgcccaaagc ctaccaagtc caggtcttcc ctgatcctaa aggagagagt
     2281 aagaagggct aaggctgttc gagcccaggg ctggaaaccc aagacctgga gcagcagtca
     2341 ggtactaaca aagagttcca gcacaaccgt ccatgacagt ggtaggagcc tcagtagtgc
     2401 cagtgagccc ccgagccaga ctccagaggc cagcaaggat ggtgatgact cctcaagctt
     2461 cactgagagc acatcaacac atctgagcag tgctgaaagc ttcacggaac tgactaacct
     2521 tttatctcag gagcctgaag aagaccgaga ctagctcacc tctggccatt atactgctcc
     2581 ctcagagagc cagttgaagc ccgtgctgag cagtgagcag acgcagcaaa gctgcctcct
     2641 cccaggacag tgagaaacct tggtcaatgt tccaatacca tggctaagtt tattatctct
     2701 gctctcttct catacaaaat taaaaacttt gaaag
//
