LOCUS       NM_001415074            3286 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus tetratricopeptide repeat domain 13 (Ttc13),
            transcript variant 1, mRNA.
ACCESSION   NM_001415074 XM_006255802
VERSION     NM_001415074.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3286)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Dec 21, 2022 this sequence version replaced XM_006255802.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.52076.1,
                                           SRR26643296.39190.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-236               JAXUCZ010000019.1  69589328-69589563   c
            237-331             JAXUCZ010000019.1  69580780-69580874   c
            332-407             JAXUCZ010000019.1  69579223-69579298   c
            408-478             JAXUCZ010000019.1  69576137-69576207   c
            479-544             JAXUCZ010000019.1  69564572-69564637   c
            545-637             JAXUCZ010000019.1  69563114-69563206   c
            638-754             JAXUCZ010000019.1  69560579-69560695   c
            755-865             JAXUCZ010000019.1  69559749-69559859   c
            866-948             JAXUCZ010000019.1  69555357-69555439   c
            949-1090            JAXUCZ010000019.1  69553931-69554072   c
            1091-1265           JAXUCZ010000019.1  69553591-69553765   c
            1266-1422           JAXUCZ010000019.1  69550067-69550223   c
            1423-1553           JAXUCZ010000019.1  69547916-69548046   c
            1554-1686           JAXUCZ010000019.1  69547359-69547491   c
            1687-1779           JAXUCZ010000019.1  69546079-69546171   c
            1780-1863           JAXUCZ010000019.1  69544742-69544825   c
            1864-1948           JAXUCZ010000019.1  69543790-69543874   c
            1949-2058           JAXUCZ010000019.1  69540938-69541047   c
            2059-2194           JAXUCZ010000019.1  69539800-69539935   c
            2195-2274           JAXUCZ010000019.1  69538502-69538581   c
            2275-2353           JAXUCZ010000019.1  69537795-69537873   c
            2354-2433           JAXUCZ010000019.1  69537582-69537661   c
            2434-3286           JAXUCZ010000019.1  69534989-69535841   c
FEATURES             Location/Qualifiers
     source          1..3286
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..3286
                     /gene="Ttc13"
                     /note="tetratricopeptide repeat domain 13"
                     /db_xref="GeneID:292095"
                     /db_xref="RGD:1310186"
     exon            1..236
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..2548
                     /gene="Ttc13"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; tetratricopeptide repeat protein 13"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 13 isoform 1
                     precursor"
                     /protein_id="NP_001402003.1"
                     /db_xref="GeneID:292095"
                     /db_xref="RGD:1310186"
                     /translation="MAPAGRGCGCSGSLGATVVRLLLLLLGALACARATEHYSPLSLL
                     KQELQHRQQQEAPAGGGCPQSGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLN
                     TEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLVGSGLYDEAIRHFSTMLQEEPD
                     LVSAIYGRGIAYGKKGLHDIKNAELALFELSRVIALEPDRPEVFEQRAEILSPLGRIN
                     EAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGL
                     TFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQN
                     HVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVATGQFYEGIKA
                     QTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYNIDTDLPGSFKDHWA
                     KNLPFLIDGYEEQPGLQPHIRDVLHQNFEGYKPEVQELICVADRLGSLMQYETPGFLP
                     NKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQP
                     VLWLDQMPAPSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKG
                     LLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGD
                     KVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLTLSAEFGEADAVCNLILSL
                     VYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSK
                     IAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSTPRCLKKL"
     exon            237..331
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            332..407
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            408..478
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            479..544
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            545..637
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            638..754
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            755..865
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            866..948
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            949..1090
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1265
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1422
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1423..1553
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1554..1686
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1687..1779
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1780..1863
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1864..1948
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1949..2058
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2059..2194
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2195..2274
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2275..2353
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2354..2433
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2434..3286
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgcgggaag atggcacctg ccggtcgcgg ctgcggctgc tccggcagct tgggtgccac
       61 ggtggtgcgg ctgctgctcc tgctgctggg ggcgctggcc tgcgcgcggg ccaccgagca
      121 ctactctccg ctgtccttgc tgaagcagga acttcagcac cggcagcagc aggaggcccc
      181 ggcgggcggc ggctgcccgc agtcggggga ctgggcggac cagtacccgg agtgcgagtc
      241 gtcatttttg aacttccatg aatctgactg cgaactgaga ggctcggccc cctgtgactc
      301 gctgctctct ctcaacactg agaagattct gagccaggcc aagtctattg ccgagcagaa
      361 gagattcccg tttgctactg acaatgacag caccaatgaa gaattagcta ttgcttacgt
      421 gctggtcggc agcggtctct acgatgaagc tataagacac ttttcaacca tgctccagga
      481 ggagcctgat ctggttagtg caatttatgg ccgagggata gcctatggaa agaagggact
      541 acatgacatt aagaacgctg agcttgcttt gtttgaactg agccgagtaa ttgccttgga
      601 acctgaccgt ccagaggtat ttgagcagcg agctgaaatt ctgtcccctc tgggacgaat
      661 taatgaagcc gtaaacgatc tcactaaagc tattcaactt cagccctcag cacggctgta
      721 ccgacaccgg gggaccttgt acttcatatc cgaggactac gcgacagccc acgaggactt
      781 tcagcagtcc ttggagctga acagaaacca gcccacagcc atgctgtaca aaggcctaac
      841 tttctttcac agaggacttc tgaaggaagc catcgaggcc ttcaaagaag ctctgaaaca
      901 gaaagtcgac tttatcgatg cctataaaag tctgggacag gcctacagag aactgggcaa
      961 ttttgaagcc gctaccgaga gcttccagaa ggccctgctg ctcaaccaga accatgtgca
     1021 gaccctgcag ctccggggca tgatgctcta ccaccatggc agcctgcagg aggccctgaa
     1081 gaacttcaag cgctgcctgc aactggaacc gtacaacgaa gtgtgccagt acatgaaggg
     1141 gctcagccat gtggcaacgg ggcagttcta tgaaggaatt aaagcacaga caaaagttat
     1201 gctgaacgac ccccttcctg gccagaaggc cagcccagag tacctgcggg tgaagtatct
     1261 ccgagagtat tctcggtatc tgcatgcaca cctcgatact cccctgacgg aatataacat
     1321 tgacacggac ctaccgggca gcttcaagga ccactgggcc aagaacctac cttttctcat
     1381 agacggctat gaagagcagc ctggcctgca gcctcacatc agggatgtgt tacatcagaa
     1441 tttcgagggc tacaagcctg aagtccagga gctgatctgt gtagctgacc gcctgggttc
     1501 actgatgcag tacgaaacac ctgggttcct gcccaacaag aggatacaca gagccatggg
     1561 tctggcagcg ctagaagtca tgcaggctgt acagcgaacc tggaccaact caaaagtccg
     1621 catgaacggg aagacgaggc tgatgcagtg gagggacatg tttgacattg ctgtgaagtg
     1681 gagaaggatc gcggatccag accagccggt gctgtggctg gatcagatgc cggcacccag
     1741 tctcagcaga ggtttcaaca accacatcaa cctaatcagg ggtcaagtga ttaatatgag
     1801 atacctggaa tattttgaga aaatacttca ttttattaaa gacaggattc ttgtttatca
     1861 tggagcaaat aatccaaagg gcttactgga agtcagagaa gctctggaaa aggtacataa
     1921 agtggaagac cttcttccaa ttatgaagca gttcaatacc aaaacaaagg acgggttcac
     1981 cgtgaacacc aaagtaccca gcctcaaaga tcaagggaag gagtatgacg gcttcaccat
     2041 caccatcaca ggagacaagg tcggcaatat cctattttct gtggaaactc aaaccacaga
     2101 agagaggaca cagctgtatc acgctgaaat agatgcactt tataaggacc tgacagcaaa
     2161 gggcaaagta ctgaccctct cggcagaatt cggggaggct gatgctgtct gcaacttaat
     2221 cttatcctta gtttattact tttataattt aatgcccctg tctcgaggat ctagtgtcat
     2281 tgcatattca gtcattgtgg gagcgctgat ggccagtggc aaagaagtgg ctgggaagat
     2341 ccccaaaggg aagttagtcg actttgaagc catgacagcc cctggctcag aggccttcag
     2401 caaaatagcg aaaagctgga tgaacttgaa aagtatctcc ccttcctaca agaccctgcc
     2461 atcagtatca gagacgttcc cgactctgag gtccatgatc gaggtgctca acacggattc
     2521 caccccacgg tgtctaaaga aactctagcc ggatcagagg atttatacac gtgaagggcc
     2581 aggcctctcg cttcttaagt tattttttaa gacatgaaat tattacagaa ttaggtcctt
     2641 tgttactttt gataccaatt tttgatagga attgaatact tgaaaacatt ttctttactt
     2701 tttctgaacc gtaacagaaa tcatgaaaac gggtttttgg ggaaaaacta cttgagcagg
     2761 aagggaagta tgtgtattag cggcagccgc tcggttccca tgtgttgagg tatactgttc
     2821 cttcctcaca gcaaaaacat gtttacttca gaaaccaaaa attaataatt aagatgaaga
     2881 aagccaatac cagcagggct tgtcttcact gtcagaggtg tgggcgtcct cagacctcct
     2941 tcctgtgcac ctctgtgggg tgcctcgcta ctgccatgcc ctcacacgtg ggccctccag
     3001 ccccccagaa ctgtggaagg gccccagcat ggcttgtggg aagaagcact ggccagatga
     3061 cgacagtatt tgccaatcac tgaaccatgt tgttcttttc tttgttggaa aaagcaagca
     3121 gaggtgattc ccgaaagtcg ccgagttggg cactggatta tgttgtgttc acgtgtgagc
     3181 tggttttgct ttcgggtgtc agagcgttta gaatgtttct tgtttcctca gtcagggcgg
     3241 aagatggagg aacaaggtcc agtaaaggct gcagtttcaa accgtg
//
