LOCUS       NM_001310047            1341 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus tumor suppressing subtransferable candidate 4
            (Tssc4), transcript variant 3, mRNA.
ACCESSION   NM_001310047 XM_006230822
VERSION     NM_001310047.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1341)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1341)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1341)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 23, 2015 this sequence version replaced XM_006230822.1.
            
            Transcript Variant: This variant (3) differs in the 5' UTR compared
            to variant 1. Variants 1, 2 and 3 encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DY562667.1, SRR26360181.44311.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               JAXUCZ010000001.1  207682545-207682662
            119-183             JAXUCZ010000001.1  207682912-207682976
            184-1341            JAXUCZ010000001.1  207683087-207684244
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q42"
     gene            1..1341
                     /gene="Tssc4"
                     /note="tumor suppressing subtransferable candidate 4"
                     /db_xref="GeneID:361682"
                     /db_xref="RGD:1307043"
     exon            1..118
                     /gene="Tssc4"
                     /inference="alignment:Splign:2.1.0"
     exon            119..183
                     /gene="Tssc4"
                     /inference="alignment:Splign:2.1.0"
     exon            184..1341
                     /gene="Tssc4"
                     /inference="alignment:Splign:2.1.0"
     CDS             193..1158
                     /gene="Tssc4"
                     /note="protein TSSC4; tumor-suppressing subchromosomal
                     transferable fragment 4"
                     /codon_start=1
                     /product="U5 small nuclear ribonucleoprotein TSSC4"
                     /protein_id="NP_001296976.1"
                     /db_xref="GeneID:361682"
                     /db_xref="RGD:1307043"
                     /translation="MSGLMAETEAGLEVEEPTEDDTLPSDTVSLSDSDSDLSLPSGVE
                     VQALSPERLSGESQEDSGPDDPPSHPTGIPTTAVQPFHLRGMSSTFSQRSHSIFDCLE
                     SAARQEPCSAPQTSVVDNCSFKRPVAPPSQTPARSLSRVHGNTDPTRVHPVPDYVSHP
                     ERWTKYSLEDVSETSEQSNRDAALAFLSSRSQASPTDYVPFFNQDPSSCGEGRVVFTK
                     PVRGSEARAERKRVLKKGVVSGAGGEASVELAHLAGPEAEEWSGHQGQPEVVVPSEAA
                     RPESSSGPIGMKTVGFHGSKKRSRDHFRNRDSNPEGPGSERGPSV"
ORIGIN      
        1 cccgagactc ggtttcccag gaatccaagc gagattgaac aggccggaat cccgtggaac
       61 tggcgggacg ctgcgggaaa ggtggcaggt tattgaagcg tgtacggatg ctggaacgct
      121 ccacatctgt gcacgctagg atacccttta gccacccagc ttcgcgaggc ctccggtccg
      181 gttgtgggac ggatgtcagg tcttatggcg gagacagagg ccggcttgga ggttgaggaa
      241 cccaccgagg atgacaccct gccttctgac accgtctccc tcagcgactc ggactctgac
      301 ctcagcttac ctagtggtgt ggaggtccaa gcgttgtccc cagagaggct ttctggggag
      361 agccaggagg actcgggccc tgatgaccct ccctcgcacc ccacgggcat tcccaccact
      421 gcagtgcagc cgttccacct ccgaggcatg agctccactt tctcccagcg gagccacagc
      481 atctttgatt gtctggagag tgcagcccgg caggaaccgt gctctgctcc ccaaaccagt
      541 gtggttgaca attgcagctt caagcggcct gtggctcccc caagtcagac tccagcaaga
      601 agcttgagca gagtgcatgg gaacactgac ccgaccaggg tacaccctgt ccctgactat
      661 gtgtcacacc ctgagcgttg gaccaaatac agtctggaag atgtgtctga aaccagtgag
      721 cagagcaatc gtgatgctgc cctggccttc ctgagctctc gaagccaggc atcccccaca
      781 gactatgtgc cctttttcaa ccaggacccc tctagctgtg gggagggaag agtggtcttc
      841 accaaaccag tgcggggcag cgaggctagg gctgagagga agagggtcct aaagaagggg
      901 gttgtgtcag gtgcaggggg tgaggcctca gtggagctag cccatctcgc cgggcctgag
      961 gctgaggaat ggagtggcca ccagggacag ccagaggtgg tagtgccttc agaagctgcc
     1021 cgtcctgagt cctcatcagg ccccataggt atgaaaactg ttggtttcca tggcagcaag
     1081 aagcggagca gagaccactt ccggaacagg gatagtaacc cggaggggcc agggtctgag
     1141 agaggaccct cagtttgact gcagtgccat cgctctacct cctcacctgc ccagtccagg
     1201 tgggacagtg tgggctctct gtagtaggga tgtgtgggcc tcaactctgg cagagactgg
     1261 gaattgtggg tcaggggacc ttgaaggcct ttgtgcccca ttgtttgggg tgaataataa
     1321 aggttttgag tatttactga a
//
