LOCUS       NM_001115027            3821 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus TSR2, ribosome maturation factor (Tsr2), mRNA.
ACCESSION   NM_001115027
VERSION     NM_001115027.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3821)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3821)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474063.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158694.1, FQ216460.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676808, SAMN16676810
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3821
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq12"
     gene            1..3821
                     /gene="Tsr2"
                     /gene_synonym="RGD1562416"
                     /note="TSR2, ribosome maturation factor"
                     /db_xref="GeneID:317418"
                     /db_xref="RGD:1562416"
     exon            1..101
                     /gene="Tsr2"
                     /gene_synonym="RGD1562416"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..596
                     /gene="Tsr2"
                     /gene_synonym="RGD1562416"
                     /note="TSR2, 20S rRNA accumulation, homolog"
                     /codon_start=1
                     /product="pre-rRNA-processing protein TSR2 homolog"
                     /protein_id="NP_001108499.1"
                     /db_xref="GeneID:317418"
                     /db_xref="RGD:1562416"
                     /translation="MMAGAAEDVRLLFGAGVRAALEAWPALQIAVENGFGGVHSQEKA
                     EWLGGAVEDYFIANADLELEEIEDFLGELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQ
                     KGDGAALQEMTSHINQKKCKVTATPLKTAKETDVAEDDVDSVEEMEVTATNDGATTDG
                     VCPQSQPSDPDSQTIKEEDIVEDGWTIVRRKK"
     exon            102..192
                     /gene="Tsr2"
                     /gene_synonym="RGD1562416"
                     /inference="alignment:Splign:2.1.0"
     exon            193..284
                     /gene="Tsr2"
                     /gene_synonym="RGD1562416"
                     /inference="alignment:Splign:2.1.0"
     exon            285..461
                     /gene="Tsr2"
                     /gene_synonym="RGD1562416"
                     /inference="alignment:Splign:2.1.0"
     exon            462..3821
                     /gene="Tsr2"
                     /gene_synonym="RGD1562416"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccacgtgacc taaacggatg atggcgggcg ccgcggaaga cgtgcgattg ctcttcggag
       61 ctggcgtccg cgccgcgctg gaggcttggc ctgctttaca gatcgctgtg gagaatggct
      121 tcgggggcgt gcacagccag gagaaggccg agtggctggg gggtgcagtg gaggattact
      181 tcatcgccaa tgctgacttg gagctggaag agatagaaga ttttcttggg gagctgatga
      241 ccactgagtt tgataccgtt gtggaagatg ggagtctgcc ccaggtgagc cagcaactac
      301 agaccatgtt ccaccacttc cagaagggtg atggggctgc tcttcaggag atgacctctc
      361 atatcaacca aaaaaagtgc aaagtcacag ctaccccact taagacggcc aaagaaactg
      421 atgtggcaga agatgatgtg gacagcgtgg aagaaatgga ggtgacagct actaatgatg
      481 gggccacaac ggatggggtc tgcccccagt ctcaaccttc tgatccagac tcccagacta
      541 ttaaggaaga ggatatagtt gaagatggct ggaccattgt ccggagaaag aaatgagcag
      601 ggcagtacat gtttggggcc cttgtttgtt gggtgttatg agagacttat aggagctgtt
      661 tttgggggaa ctatacacct ctgttctgga aaccgtatcc cttctttgtt cccatccttc
      721 ccttcagggg aagaaaagcc ctaaagtcct tggttgtggg gttgatgaga cctattccag
      781 ccccttgaat cttaaggtac catatgagag atgagaccag gtttcccagc atagtgcctc
      841 ctaggtgcag tgaattggaa gatgggtgat aggtgtggat gtggttatag aagccaggct
      901 tgtggaaagt aggcaggtac atttatggaa aggaccggaa ttccacagtg ggaggctggc
      961 tggcttggca attgtgagaa aagcatacag ctggaagaga gatgtagaag tctacattcc
     1021 ccaatgtccc caccctagcc tcccacagag cattccccaa ccgaccagaa ttttcatcct
     1081 cctgggaatt ctcccccttg aatacccttg agagtttgaa ggacttaact aaaagtggtg
     1141 aacttgggaa agttgggctg ttttaagtcc agggatgagg cttaagatct taataacata
     1201 acactttctt gtttaattca tgatttaacc ttggaatcag ctttctgaga gctgagcttc
     1261 aaaattcatc aagagagtag tttctgcacc ctcccctctc ccttagtagc ctgggacttc
     1321 ggacaaacgg acggaccata gcagtgctct gaaagttact gtacgcctga aataaactgt
     1381 atttttcttt aaaaaacagt atccattgtc ctcccctccc gcccccccat tcccgtcctg
     1441 cccagtggcc ctgccatgga tctggacgat aaaatactgg attgctttgg ggctaggtag
     1501 aagctataag ccatgggaaa ggcaagaagg gtctagtcac caccccatgt aaagtcatac
     1561 atgtgaagac actggctgag gaggaaaggg tggattgggg tcccagggtc agtagcagag
     1621 ctggcacttg aatccaggtc tcctgcctct ggtacttttg tggggaacta gatgaaagta
     1681 ggatctgtgg ggtactggga ggaaacagac taattcaagt gagtctagca attagctcct
     1741 gccctccctg gggacaggga tttaaaaaat taacatcaat gtaggaatag tttgtctttc
     1801 ttttttaaaa agcccacatt ttgtgaaaag atgaattaaa aaacccaaga cccagcattc
     1861 gggattgaaa gtgcccttga tgggaattca agtattgact gcattgggag tgggctagag
     1921 cccccaattg aacatgggca gctggagtgt ggggcaggaa ctcccagttc cccccccaaa
     1981 ccctctaggt cttgtctcgg gtctgggagg cttcaggagg ttcagcagtg gctcctgaag
     2041 ctgccactgt tgtctcctcc atctccttgt cctcagacag tgtgggccct gggcagaatg
     2101 tgtccccacg gcccgccctg ccaagcacag ccatccagcg ccgctggagt tcttctgtct
     2161 ctgggctgaa gtaccagctt aggtggctct gggtgatctt gaagacatgc ctcctgtctg
     2221 gccgctcccc tgcctcagga ggccccacct caaagccaat gaggggcagg ctgcgttggg
     2281 ctttcacatc ctggagagga aggacagaga gctagtgtca cttagggcca gacagtatcc
     2341 tctgcccagt gaaacaactt tgcactgttc tgctgtttcc ctctgtgaaa aacactgcct
     2401 tcactgtaat gaacataaag atgtctgaac tgggactaga aggcaggctg gttacatgtc
     2461 tatctcctcc catgcccaaa tcaactgcta atctttacta ttacagatgc agttctttcg
     2521 ctagttcctc tatctgccta ttctgtttta gtgtcacacc tagaggctcc tgtctctgct
     2581 cctgttttct ccagaaagcc agacttccca cctcaccctc attttccccg tatcttggcc
     2641 tccaaacact tctacctacc tgctctgtca tgtaaggata ggggttttta tttttccctt
     2701 tgctaggctt accctgtccc tgcaggacaa ggcatacagg agaagggcag cccagctttg
     2761 tcagatagct ggagaaacct gaaggagtag gatgcacacc tgaggggctc catagatgta
     2821 cagcaccaag ggttcattct cgggaaccac aaaccatgcc ttgtgccatc ctttcccacc
     2881 cttctccatg tagtgcagga agctgcagat gacgctgttc tcagcagcca ctgaggcctg
     2941 tttctgtgat cagagacaca gtacagggta catcaatgtt gatggaaagc tttgctcttg
     3001 gcttaaacag ccccatagtg tatggactat gtctcagaca gaggtagcaa aactgtgcaa
     3061 gtcatagcta aaatgatttg gcctttgtca ctgaaataag cagagtgagg cttggctgct
     3121 gactctaaca acaataaggg gtgtgcagat ttcagtgggg acagtgaaat aaatgctggc
     3181 cagatactct tcaagctaag ggacattcac agctaactct tttcatcttt cattatatac
     3241 ttactgcctg ctctgagaaa gtccttctaa tgtgattaat gggatgagtg ggtgcctaac
     3301 accatctgtc ttagagtcct aacaatagat gaaaatgcag gacttctgag aagagcacag
     3361 agggtgttta tgggattgaa attagcataa acaaggcatt taaaatagtt atggtacaga
     3421 ggaagctccc ttacatttgg gataccttga ttttactttt aaaaaaaaaa tcaccccaca
     3481 tatgtgtata ttcatggtcc taaaagatag gatcagtatt aacagtggca acttctgggt
     3541 aaagcactat gtcttatttt gtgttcttat cctatttcac aatttaaaaa tgtacttagt
     3601 tcatttttaa ataatcctat aggctagcct aggttatgca gtgagactct gtctgaaata
     3661 aaacgatacc tagaagcatt tttctggttg tacaacttag ccaaatatac tctctgtgtt
     3721 tcagtttcct catatgtaaa tgaaggatac gggtataggt tgttcagtta ctgtaagagt
     3781 taagtgttta acattcttta ataaaaatcc ttttaaccct t
//
