LOCUS       XM_017597686            5832 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TSPO associated protein 1 (Tspoap1),
            transcript variant X6, mRNA.
ACCESSION   XM_017597686
VERSION     XM_017597686.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017597686.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017597686.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5832
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5832
                     /gene="Tspoap1"
                     /gene_synonym="Bzrap1; PRAX-1; RIM-BP1"
                     /note="TSPO associated protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:287609"
                     /db_xref="RGD:708563"
     CDS             445..4875
                     /gene="Tspoap1"
                     /gene_synonym="Bzrap1; PRAX-1; RIM-BP1"
                     /codon_start=1
                     /product="peripheral-type benzodiazepine
                     receptor-associated protein 1 isoform X6"
                     /protein_id="XP_017453175.1"
                     /db_xref="GeneID:287609"
                     /db_xref="RGD:708563"
                     /translation="MREVAQRRQQLEEEHEQARLSLQEKQEEVRRLQQAQAEAKREHE
                     GAVQLLESTLDSMQARVRELEGQCRSQTERFSLLAQELQAFRLHPGPLDLLTSALGCN
                     ALGDHPPPHCCCSSPQPCQGSGPKDLDLPPGSPGRCTPKSSEPALATLTGVPRRTAKK
                     AESLSNSSRSESIHNSPKSCPTPEVDTASEVEELEVDSVSLLPAAPEGHSGGARIQVF
                     LARYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMDGRRGLVPSNFVE
                     RVSDDDLLSTLPRELADSSHSSGPELSFLSGGGGGCSSGGQSSGGRSQPRPEEEATGD
                     ELSLSPPPEGLGEPLAVPYPRHITVLKQLAHSVVLAWELPPERVDLRGFHIFVNGELR
                     QALGPGVPPKAVLENMDLRAGPLHVSVQALTSKGSSDPLRCCLAMGAGAGVVPSQLRI
                     HRLTATSAEITWVPGNSNLAHAVYLNGEECPPARPSTYWATFCNLRPGTLYQARVEAQ
                     IPSQGPWEPGWERPELRAATLQFTTLPAGLPDAPLDVQAEPGPSPGIVMISWLPVTID
                     AAGTSNGVRVTGYAVYADGQKIMEVASPTAGSVLVEVSQLQLLQACHEVTVRTMSPHG
                     ESTDSIPAPVAPALASACQPARMSCLSPRPSPEVRTPLASVSPGLGYTSLPLRHPVPH
                     GTQDSPASLSTEMSKGPQEEPPVPCSQEEAGSAVHRTSEEKRAMEPTLGQEGPDPVAP
                     FLAKQAVECTSGDAGPTPCSTQEELTQKEPSTEVCHRGDLDSELKLRSEKEGMSELGV
                     HLVNSLVDHSRNSDLSDIQEEEEEEEEEEELGSRPCSFQKQVAGNSIGENGAKPQPDP
                     SCETDSDEEILEQILELPLQRLCSKKLFSIPEEEEEEDEEEGLGKPGPSSSSQDPSQP
                     ERALLGLDCESSQPQGPGLCPLSPELSGAREHLEDVLGVVGGNSRRRGGCSPEKLPNR
                     KRPQDPREHCSRLLGNGGPQTSARPVPPRDRGSLPVIEGTRVGQEPGGRGRPGLSRRC
                     PRGPAPESSLVSCLSPKCLEISIEYDSEDEQEVGSGGVSISSSCYPTDGEAWGTAAVG
                     RPRGPVKVNSGSNTYLRLPAWEKGEPERRGHSAIGRTKEPPSRATETGESRGQDNSGR
                     RGPQRRGARVLRTGTTELAPPRSPQEAPSHQDLPLRVFVALFDYDPISMSPNPDAGEE
                     ELPFREGQILKVFGDKDADGFYRGESGGRTGYIPCNMVAEVAVDTPIGRQQLLQRGFL
                     PPNVLTQGSGNGPSVYPSAHTPGPPPKPRRSKKAWDKEGKASRTQRYLLSTVELEDPA
                     QLCPGPPKLIHSAALKTSRPMVAAFDYNPRENSPNMDVEAELPFRAGDVITVFGNMDD
                     DGFYYGELNGQRGLVPSNFLEGPGPEAGGLDSGTSQAESQDSRVIIQGPPVPPGWHYA
                     LSSGSSSKTKLGESQGIAEKKQGLLAKGKELLKRLGSRKD"
ORIGIN      
        1 gtccgcccgg cggccaagcc tggcccgggt tatcccggcg gggcggtgca tacgactcag
       61 ttccagaccg tacttgagga tgatgtggag agcccacagg tggtcctagg ggaaccagag
      121 aaacagctaa gggtgcagca gctggagtct gagctctgca aaaagcgaaa gaaatgtgag
      181 agcctggagc aggaagccag gaaaaagcag aggcgatgtg aggagctgga actacagctg
      241 agggcagccc agaatgaaaa tgcccgcctg gtggaggaga actctcggct tagtgggaaa
      301 gccacagaga aggagcaggt ggagtgggag aatgcagagc tgaagggaca gctcctgggg
      361 gtgacacagg agagggactc agcccttagg aagagccagg gcctgcaaag caagctggag
      421 agcctggagc aggtgctgaa gcatatgcgg gaggtggccc agcggaggca acagctggag
      481 gaggagcatg aacaggcgag gctcagcctg caggagaagc aggaggaggt ccggaggctg
      541 cagcaggccc aggcagaagc caagagagaa catgagggag cagtacagct gctggagtct
      601 accttggatt ccatgcaggc ccgggttcga gagcttgagg gccagtgtcg aagccaaact
      661 gagcgcttca gccttctggc acaggagctc caggccttcc gtctgcaccc aggtcctctg
      721 gatttgctca cttcagccct gggatgtaat gcccttggag accatccacc accccactgt
      781 tgttgctcct cccctcagcc ctgccagggg tccggcccca aagatcttga cctcccaccg
      841 ggctccccag gacgctgtac ccccaaatct tctgagcctg ctcttgctac tcttactgga
      901 gtccctcgaa ggacagctaa gaaggcggag tctctttcta attcttctcg ctcagagtcc
      961 atccacaaca gccccaagtc ctgtcccaca ccagaggtgg acacagccag tgaggtggag
     1021 gagctggaag tagacagcgt ctccctgctc ccagcagctc cagagggcca ctcgggagga
     1081 gccagaatcc aggtcttcct agcacgctat agctacaacc cctttgaggg tcccaatgag
     1141 aacccagagg ctgagcttcc gctgacagcc ggcgagtaca tctacatcta tggtaacatg
     1201 gacgaggatg gcttttttga aggggagctc atggatggcc gaaggggcct ggtcccctcc
     1261 aactttgtag agcgtgtgtc tgatgacgac ctcctgtcca ccctccctcg ggagctggcc
     1321 gattcatcgc atagctctgg ccctgaactc agtttcctga gtggaggcgg gggtggttgc
     1381 agtagtgggg gccagagcag cgggggacgt agccagccca gaccagagga ggaggctacg
     1441 ggagatgaac tcagtctgag ccccccacca gagggactgg gtgagcctct ggctgtgcct
     1501 tacccccgac atatcacggt tctcaagcag ctagcccaca gtgtggtgct ggcttgggag
     1561 ttgcctcctg agagagtaga tctacgtggc ttccatatct ttgtcaatgg ggaacttcgt
     1621 caggccttgg ggcctggggt gccccccaaa gctgtgcttg aaaatatgga cctgcgggca
     1681 gggcccctcc atgtgtctgt ccaggcccta accagcaagg gcagctcaga tcctctgcgc
     1741 tgttgcctgg ctatgggtgc tggagctggg gtggtaccca gccagctacg gatccatcgg
     1801 ctgacagcca catctgctga gatcacctgg gtgccaggga atagcaactt ggcccatgcc
     1861 gtctacctca atggagaaga gtgcccacct gcccgcccca gcacctactg ggcaaccttt
     1921 tgtaacctga ggcctggcac actctatcag gcccgagtgg aggctcagat cccatctcag
     1981 gggccttggg aaccaggctg ggagaggcca gagcttcgag ctgctacctt gcagttcacc
     2041 acacttccag caggcctgcc tgacgcccct ctggatgtac aggctgaacc aggaccctct
     2101 cctggaattg taatgatcag ctggctccct gttaccattg acgctgctgg tacctccaat
     2161 ggtgtccggg ttacaggcta cgcagtctat gctgatgggc agaagattat ggaggtggct
     2221 tcccccacag caggcagtgt gctggtggag gtgtcccagc tgcagctgct gcaggcctgc
     2281 cacgaggtga ctgtacgcac tatgtcaccc catggcgagt ccactgactc catcccggcc
     2341 cctgttgccc cagccctggc ttctgcctgc cagccagcca ggatgtcctg tctctcacca
     2401 cgaccaagcc cagaggtcag aacacccctt gcttcagtct ccccagggct tgggtatacc
     2461 agccttcccc tccggcatcc tgtcccccat ggaactcaag attcccctgc aagcctttcc
     2521 acagagatgt ccaaagggcc ccaagaggag cctccggtcc cttgctctca ggaagaggct
     2581 gggtcagctg tgcatcgaac ctcagaagag aagagggcta tggagccaac tctgggccag
     2641 gaaggccctg accctgtggc tcccttcctg gctaagcagg cagtggagtg cacttcagga
     2701 gatgctggcc ccacaccttg ctctacccaa gaagaactga cccagaagga gccaagtact
     2761 gaagtctgcc accggggaga tctggattcc gagctgaaac tcagatctga gaaagaaggt
     2821 atgtcagagc ttggagttca cctggtgaat tcccttgtgg atcacagccg caactcagac
     2881 ttatcagaca tccaggaaga agaggaagag gaggaagagg aagaggaact gggttccagg
     2941 ccttgttctt tccagaagca ggttgctggc aacagcatcg gggagaatgg agccaagccc
     3001 cagccagacc cctcttgtga gactgacagc gacgaggaga tcttggagca gatactggag
     3061 ttgcctctcc agcggctgtg cagcaagaag ctgttcagca tccccgagga ggaagaagag
     3121 gaggatgagg aggaagggct ggggaaacca gggcccagca gctcttccca agaccctagc
     3181 cagcctgaac gtgcattgct aggtctggac tgtgagagca gtcagcccca gggacctggc
     3241 ctatgtccct tgtctcctga gctctccggg gccagggagc acctggagga tgtgctagga
     3301 gtagttggtg gaaacagccg gaggagagga ggttgttccc ctgagaaact cccaaaccgc
     3361 aaacgacctc aggacccccg agaacattgc agccggcttc ttggcaatgg cgggccccag
     3421 acctctgccc gaccagtccc tccacgggac aggggcagcc tccctgtgat tgaaggcacc
     3481 agggttggac aggagcctgg tgggagaggg cggccgggtc tttcccggag gtgtccccgt
     3541 ggccctgctc cagaatccag cttggtcagc tgcctctctc caaagtgttt ggagatcagc
     3601 attgagtatg attctgagga tgaacaggag gtgggcagcg ggggtgtcag catcagcagc
     3661 tcctgttacc ccacagatgg ggaggcctgg ggcacagcgg ccgtaggaag gcccagggga
     3721 cctgtgaagg tcaattcggg ctccaacacc tacctgcgcc tcccggcctg ggagaaaggg
     3781 gaaccagagc ggagaggcca cagtgcgatt ggccgaacca aggagccgcc ctcccgggca
     3841 acagaaactg gggagtccag agggcaggac aactctgggc ggagaggacc ccagaggaga
     3901 ggggcccggg tgcttaggac tggtaccact gagctggccc ctccaaggag cccccaagaa
     3961 gcaccatctc atcaagacct acccttgagg gtctttgtgg ctctgtttga ctatgaccct
     4021 atttcaatgt caccgaaccc tgatgctgga gaagaggaac tgcccttcag ggagggccag
     4081 atcctcaagg tgtttggaga caaagacgct gatggtttct accggggcga aagtgggggc
     4141 cgcacaggct acatcccctg caacatggtg gccgaggtgg ctgtggacac tccaataggg
     4201 agacaacagc tgctccagcg aggtttcttg cccccaaatg tcctcaccca gggctcgggg
     4261 aacggtccct ctgtgtaccc ctcagcccac acacctgggc ctccccccaa gcctcgccgg
     4321 tccaagaaag cctgggacaa agagggaaag gcaagcagga ctcagaggta ccttctgtcc
     4381 acagtggagc tggaagatcc tgcacagctc tgtccaggtc ctcctaagct gatccattct
     4441 gctgccctga aaacctcccg acctatggtg gctgcattcg actacaaccc tcgggagaac
     4501 tcccccaaca tggatgtgga ggcagagctg cccttccgag caggggatgt cattactgtg
     4561 tttgggaata tggacgatga tggtttctac tatggggaac tgaatggaca aaggggcctg
     4621 gttccatcca acttcctgga gggccctggg cctgaggcag gcggcctaga ctctgggaca
     4681 tctcaagctg agagtcagga ctctagagtc atcatacaag ggcctccagt gcccccaggc
     4741 tggcactatg ccctcagctc tggaagttcc tccaagacca aactggggga gtcgcagggc
     4801 atagctgaga agaagcaggg tctcctcgcc aaaggaaagg aactcctcaa aaggctgggc
     4861 tccagaaaag actgaggctg tcatctgtcc tacaggcaga cgtggcccct gggagctcca
     4921 gatcaactca gtgtctggac agggaaaccc aactcctgtt ctctgagcaa actggcactc
     4981 aaagggatcc aggggacctg gtgagggtgg agtgactgca tctttagtaa ggagccctct
     5041 agatgggctc ttccagcggg gaactgagcc ccagagtaag taatcaagca ccaagcactg
     5101 tcagatcagg actggaccca cgcctctgga ttcccagtct gtcctcctaa tctactcctg
     5161 atttcctacc ttgttctgta ggttccttct tggtcttctg ctccaaggat aggccctggg
     5221 tggagacagg gaccactcta aggatggctc tggctgtcct cgtttgcact ggactgtccc
     5281 ctggggcagg ggcagagcca tgtatatatg tacatactca gtgcctcagt ccagctcctc
     5341 catctgcttc accccacagg ccaggggagg agaaaggcca tgccaaagcg ggcctgaccc
     5401 caccccatag tgctccaccc ctccctgccc aggccacctg gcctctgtgt gatcctatcc
     5461 ccccaaaccc aggggaccag ggggcagaaa gcaggagttg ggtttgcctt attttgctca
     5521 ttggattcaa cttctctctt gcatcatttt cttccagtcc ctttggggtc caggggctga
     5581 gagaaaggac ggatttatac agctattttc atacattccc tgttcggagt gggtaggggt
     5641 gtctcccctt actctaacca tcccatcctc ctccccttgt ctgggcgagt ctctttgcat
     5701 gttttctttg ctgtggtggg agatgtttga ttgaaccctc acccctaccc tggtctccag
     5761 gggtgttgga tggtgggggc atttgtttaa aaagacattt tactataata aagtctattt
     5821 tcacaaaatt ga
//
