LOCUS       XM_017597685            6452 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TSPO associated protein 1 (Tspoap1),
            transcript variant X5, mRNA.
ACCESSION   XM_017597685
VERSION     XM_017597685.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017597685.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017597685.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6452
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6452
                     /gene="Tspoap1"
                     /gene_synonym="Bzrap1; PRAX-1; RIM-BP1"
                     /note="TSPO associated protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:287609"
                     /db_xref="RGD:708563"
     CDS             522..5495
                     /gene="Tspoap1"
                     /gene_synonym="Bzrap1; PRAX-1; RIM-BP1"
                     /codon_start=1
                     /product="peripheral-type benzodiazepine
                     receptor-associated protein 1 isoform X5"
                     /protein_id="XP_017453174.1"
                     /db_xref="GeneID:287609"
                     /db_xref="RGD:708563"
                     /translation="MRDFDRLLRESQREVLRLQRQIALRNQREPLRPARSQGSTAPSS
                     VGAPAPGAPGETVLEDDVESPQVVLGEPEKQLRVQQLESELCKKRKKCESLEQEARKK
                     QRRCEELELQLRAAQNENARLVEENSRLSGKATEKEQVEWENAELKGQLLGVTQERDS
                     ALRKSQGLQSKLESLEQVLKHMREVAQRRQQLEEEHEQARLSLQEKQEEVRRLQQAQA
                     EAKREHEGAVQLLESTLDSMQARVRELEGQCRSQTERFSLLAQELQAFRLHPGPLDLL
                     TSALGCNALGDHPPPHCCCSSPQPCQGSGPKDLDLPPGSPGRCTPKSSEPALATLTGV
                     PRRTAKKAESLSNSSRSESIHNSPKSCPTPEVDTASEVEELEVDSVSLLPAAPEGHSG
                     GARIQVFLARYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMDGRRGL
                     VPSNFVERVSDDDLLSTLPRELADSSHSSGPELSFLSGGGGGCSSGGQSSGGRSQPRP
                     EEEATGDELSLSPPPEGLGEPLAVPYPRHITVLKQLAHSVVLAWELPPERVDLRGFHI
                     FVNGELRQALGPGVPPKAVLENMDLRAGPLHVSVQALTSKGSSDPLRCCLAMGAGAGV
                     VPSQLRIHRLTATSAEITWVPGNSNLAHAVYLNGEECPPARPSTYWATFCNLRPGTLY
                     QARVEAQIPSQGPWEPGWERPELRAATLQFTTLPAGLPDAPLDVQAEPGPSPGIVMIS
                     WLPVTIDAAGTSNGVRVTGYAVYADGQKIMEVASPTAGSVLVEVSQLQLLQACHEVTV
                     RTMSPHGESTDSIPAPVAPALASACQPARMSCLSPRPSPEVRTPLASVSPGLGYTSLP
                     LRHPVPHGTQDSPASLSTEMSKGPQEEPPVPCSQEEAGSAVHRTSEEKRAMEPTLGQE
                     GPDPVAPFLAKQAVECTSGDAGPTPCSTQEELTQKEPSTEVCHRGDLDSELKLRSEKE
                     GMSELGVHLVNSLVDHSRNSDLSDIQEEEEEEEEEEELGSRPCSFQKQVAGNSIGENG
                     AKPQPDPSCETDSDEEILEQILELPLQRLCSKKLFSIPEEEEEEDEEEGLGKPGPSSS
                     SQDPSQPERALLGLDCESSQPQGPGLCPLSPELSGAREHLEDVLGVVGGNSRRRGGCS
                     PEKLPNRKRPQDPREHCSRLLGNGGPQTSARPVPPRDRGSLPVIEGTRVGQEPGGRGR
                     PGLSRRCPRGPAPESSLVSCLSPKCLEISIEYDSEDEQEVGSGGVSISSSCYPTDGEA
                     WGTAAVGRPRGPVKVNSGSNTYLRLPAWEKGEPERRGHSAIGRTKEPPSRATETGESR
                     GQDNSGRRGPQRRGARVLRTGTTELAPPRSPQEAPSHQDLPLRVFVALFDYDPISMSP
                     NPDAGEEELPFREGQILKVFGDKDADGFYRGESGGRTGYIPCNMVAEVAVDTPIGRQQ
                     LLQRGFLPPNVLTQGSGNGPSVYPSAHTPGPPPKPRRSKKAWDKEGKASRTQRYLLST
                     VELEDPAQLCPGPPKLIHSAALKTSRPMVAAFDYNPRENSPNMDVEAELPFRAGDVIT
                     VFGNMDDDGFYYGELNGQRGLVPSNFLEGPGPEAGGLDSGTSQAESQDSRVIIQGPPV
                     PPGWHYALSSGSSSKTKLGESQGIAEKKQGLLAKGKELLKRLGSRKD"
ORIGIN      
        1 cggggtggag gcttgggtga cttgggaaga ggaaaaccaa ggctgggctt gggagtcata
       61 gacttactac ccaggaaagc aagagtccag gggctcgtaa ggaagacgaa cgctggcctt
      121 ggagaggtgt ctggagctac cagagggaaa gggatggatg aggaggctcc cgagaagtcg
      181 gggagcagaa tcgggagaga cacgtgctgg agctagttgc agtctcctgc tgagctcatc
      241 tggggtgtgg agctggagtg ggggcaggga gaagacccat catagtggca gccctgaatt
      301 agcagtgtcc tcaagcctaa actaagatgt agtgttaacg ctttcgagcc tagttgggga
      361 ctgcctggat ggggttcaat gaggattcag tttctctgag gccccagact ggatttcttc
      421 ccaattctct ggaagatgtg gaatgggagg tgtaccttaa gccctcagat gaccactggc
      481 tttgccccac ctctggctag gaaggtcccc agtggctgca tatgcgggac ttcgaccggt
      541 tgctgcgcga gtcccaacgg gaggtgctgc ggctgcagag gcaaatcgcc ctgcgcaacc
      601 agcgggagcc cctccggcca gcccggtccc agggttctac tgccccctcc agcgtagggg
      661 cgccggcccc cggggccccg ggagagaccg tacttgagga tgatgtggag agcccacagg
      721 tggtcctagg ggaaccagag aaacagctaa gggtgcagca gctggagtct gagctctgca
      781 aaaagcgaaa gaaatgtgag agcctggagc aggaagccag gaaaaagcag aggcgatgtg
      841 aggagctgga actacagctg agggcagccc agaatgaaaa tgcccgcctg gtggaggaga
      901 actctcggct tagtgggaaa gccacagaga aggagcaggt ggagtgggag aatgcagagc
      961 tgaagggaca gctcctgggg gtgacacagg agagggactc agcccttagg aagagccagg
     1021 gcctgcaaag caagctggag agcctggagc aggtgctgaa gcatatgcgg gaggtggccc
     1081 agcggaggca acagctggag gaggagcatg aacaggcgag gctcagcctg caggagaagc
     1141 aggaggaggt ccggaggctg cagcaggccc aggcagaagc caagagagaa catgagggag
     1201 cagtacagct gctggagtct accttggatt ccatgcaggc ccgggttcga gagcttgagg
     1261 gccagtgtcg aagccaaact gagcgcttca gccttctggc acaggagctc caggccttcc
     1321 gtctgcaccc aggtcctctg gatttgctca cttcagccct gggatgtaat gcccttggag
     1381 accatccacc accccactgt tgttgctcct cccctcagcc ctgccagggg tccggcccca
     1441 aagatcttga cctcccaccg ggctccccag gacgctgtac ccccaaatct tctgagcctg
     1501 ctcttgctac tcttactgga gtccctcgaa ggacagctaa gaaggcggag tctctttcta
     1561 attcttctcg ctcagagtcc atccacaaca gccccaagtc ctgtcccaca ccagaggtgg
     1621 acacagccag tgaggtggag gagctggaag tagacagcgt ctccctgctc ccagcagctc
     1681 cagagggcca ctcgggagga gccagaatcc aggtcttcct agcacgctat agctacaacc
     1741 cctttgaggg tcccaatgag aacccagagg ctgagcttcc gctgacagcc ggcgagtaca
     1801 tctacatcta tggtaacatg gacgaggatg gcttttttga aggggagctc atggatggcc
     1861 gaaggggcct ggtcccctcc aactttgtag agcgtgtgtc tgatgacgac ctcctgtcca
     1921 ccctccctcg ggagctggcc gattcatcgc atagctctgg ccctgaactc agtttcctga
     1981 gtggaggcgg gggtggttgc agtagtgggg gccagagcag cgggggacgt agccagccca
     2041 gaccagagga ggaggctacg ggagatgaac tcagtctgag ccccccacca gagggactgg
     2101 gtgagcctct ggctgtgcct tacccccgac atatcacggt tctcaagcag ctagcccaca
     2161 gtgtggtgct ggcttgggag ttgcctcctg agagagtaga tctacgtggc ttccatatct
     2221 ttgtcaatgg ggaacttcgt caggccttgg ggcctggggt gccccccaaa gctgtgcttg
     2281 aaaatatgga cctgcgggca gggcccctcc atgtgtctgt ccaggcccta accagcaagg
     2341 gcagctcaga tcctctgcgc tgttgcctgg ctatgggtgc tggagctggg gtggtaccca
     2401 gccagctacg gatccatcgg ctgacagcca catctgctga gatcacctgg gtgccaggga
     2461 atagcaactt ggcccatgcc gtctacctca atggagaaga gtgcccacct gcccgcccca
     2521 gcacctactg ggcaaccttt tgtaacctga ggcctggcac actctatcag gcccgagtgg
     2581 aggctcagat cccatctcag gggccttggg aaccaggctg ggagaggcca gagcttcgag
     2641 ctgctacctt gcagttcacc acacttccag caggcctgcc tgacgcccct ctggatgtac
     2701 aggctgaacc aggaccctct cctggaattg taatgatcag ctggctccct gttaccattg
     2761 acgctgctgg tacctccaat ggtgtccggg ttacaggcta cgcagtctat gctgatgggc
     2821 agaagattat ggaggtggct tcccccacag caggcagtgt gctggtggag gtgtcccagc
     2881 tgcagctgct gcaggcctgc cacgaggtga ctgtacgcac tatgtcaccc catggcgagt
     2941 ccactgactc catcccggcc cctgttgccc cagccctggc ttctgcctgc cagccagcca
     3001 ggatgtcctg tctctcacca cgaccaagcc cagaggtcag aacacccctt gcttcagtct
     3061 ccccagggct tgggtatacc agccttcccc tccggcatcc tgtcccccat ggaactcaag
     3121 attcccctgc aagcctttcc acagagatgt ccaaagggcc ccaagaggag cctccggtcc
     3181 cttgctctca ggaagaggct gggtcagctg tgcatcgaac ctcagaagag aagagggcta
     3241 tggagccaac tctgggccag gaaggccctg accctgtggc tcccttcctg gctaagcagg
     3301 cagtggagtg cacttcagga gatgctggcc ccacaccttg ctctacccaa gaagaactga
     3361 cccagaagga gccaagtact gaagtctgcc accggggaga tctggattcc gagctgaaac
     3421 tcagatctga gaaagaaggt atgtcagagc ttggagttca cctggtgaat tcccttgtgg
     3481 atcacagccg caactcagac ttatcagaca tccaggaaga agaggaagag gaggaagagg
     3541 aagaggaact gggttccagg ccttgttctt tccagaagca ggttgctggc aacagcatcg
     3601 gggagaatgg agccaagccc cagccagacc cctcttgtga gactgacagc gacgaggaga
     3661 tcttggagca gatactggag ttgcctctcc agcggctgtg cagcaagaag ctgttcagca
     3721 tccccgagga ggaagaagag gaggatgagg aggaagggct ggggaaacca gggcccagca
     3781 gctcttccca agaccctagc cagcctgaac gtgcattgct aggtctggac tgtgagagca
     3841 gtcagcccca gggacctggc ctatgtccct tgtctcctga gctctccggg gccagggagc
     3901 acctggagga tgtgctagga gtagttggtg gaaacagccg gaggagagga ggttgttccc
     3961 ctgagaaact cccaaaccgc aaacgacctc aggacccccg agaacattgc agccggcttc
     4021 ttggcaatgg cgggccccag acctctgccc gaccagtccc tccacgggac aggggcagcc
     4081 tccctgtgat tgaaggcacc agggttggac aggagcctgg tgggagaggg cggccgggtc
     4141 tttcccggag gtgtccccgt ggccctgctc cagaatccag cttggtcagc tgcctctctc
     4201 caaagtgttt ggagatcagc attgagtatg attctgagga tgaacaggag gtgggcagcg
     4261 ggggtgtcag catcagcagc tcctgttacc ccacagatgg ggaggcctgg ggcacagcgg
     4321 ccgtaggaag gcccagggga cctgtgaagg tcaattcggg ctccaacacc tacctgcgcc
     4381 tcccggcctg ggagaaaggg gaaccagagc ggagaggcca cagtgcgatt ggccgaacca
     4441 aggagccgcc ctcccgggca acagaaactg gggagtccag agggcaggac aactctgggc
     4501 ggagaggacc ccagaggaga ggggcccggg tgcttaggac tggtaccact gagctggccc
     4561 ctccaaggag cccccaagaa gcaccatctc atcaagacct acccttgagg gtctttgtgg
     4621 ctctgtttga ctatgaccct atttcaatgt caccgaaccc tgatgctgga gaagaggaac
     4681 tgcccttcag ggagggccag atcctcaagg tgtttggaga caaagacgct gatggtttct
     4741 accggggcga aagtgggggc cgcacaggct acatcccctg caacatggtg gccgaggtgg
     4801 ctgtggacac tccaataggg agacaacagc tgctccagcg aggtttcttg cccccaaatg
     4861 tcctcaccca gggctcgggg aacggtccct ctgtgtaccc ctcagcccac acacctgggc
     4921 ctccccccaa gcctcgccgg tccaagaaag cctgggacaa agagggaaag gcaagcagga
     4981 ctcagaggta ccttctgtcc acagtggagc tggaagatcc tgcacagctc tgtccaggtc
     5041 ctcctaagct gatccattct gctgccctga aaacctcccg acctatggtg gctgcattcg
     5101 actacaaccc tcgggagaac tcccccaaca tggatgtgga ggcagagctg cccttccgag
     5161 caggggatgt cattactgtg tttgggaata tggacgatga tggtttctac tatggggaac
     5221 tgaatggaca aaggggcctg gttccatcca acttcctgga gggccctggg cctgaggcag
     5281 gcggcctaga ctctgggaca tctcaagctg agagtcagga ctctagagtc atcatacaag
     5341 ggcctccagt gcccccaggc tggcactatg ccctcagctc tggaagttcc tccaagacca
     5401 aactggggga gtcgcagggc atagctgaga agaagcaggg tctcctcgcc aaaggaaagg
     5461 aactcctcaa aaggctgggc tccagaaaag actgaggctg tcatctgtcc tacaggcaga
     5521 cgtggcccct gggagctcca gatcaactca gtgtctggac agggaaaccc aactcctgtt
     5581 ctctgagcaa actggcactc aaagggatcc aggggacctg gtgagggtgg agtgactgca
     5641 tctttagtaa ggagccctct agatgggctc ttccagcggg gaactgagcc ccagagtaag
     5701 taatcaagca ccaagcactg tcagatcagg actggaccca cgcctctgga ttcccagtct
     5761 gtcctcctaa tctactcctg atttcctacc ttgttctgta ggttccttct tggtcttctg
     5821 ctccaaggat aggccctggg tggagacagg gaccactcta aggatggctc tggctgtcct
     5881 cgtttgcact ggactgtccc ctggggcagg ggcagagcca tgtatatatg tacatactca
     5941 gtgcctcagt ccagctcctc catctgcttc accccacagg ccaggggagg agaaaggcca
     6001 tgccaaagcg ggcctgaccc caccccatag tgctccaccc ctccctgccc aggccacctg
     6061 gcctctgtgt gatcctatcc ccccaaaccc aggggaccag ggggcagaaa gcaggagttg
     6121 ggtttgcctt attttgctca ttggattcaa cttctctctt gcatcatttt cttccagtcc
     6181 ctttggggtc caggggctga gagaaaggac ggatttatac agctattttc atacattccc
     6241 tgttcggagt gggtaggggt gtctcccctt actctaacca tcccatcctc ctccccttgt
     6301 ctgggcgagt ctctttgcat gttttctttg ctgtggtggg agatgtttga ttgaaccctc
     6361 acccctaccc tggtctccag gggtgttgga tggtgggggc atttgtttaa aaagacattt
     6421 tactataata aagtctattt tcacaaaatt ga
//
