LOCUS       XM_039078393             877 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus translocator protein (Tspo),
            transcript variant X1, mRNA.
ACCESSION   XM_039078393
VERSION     XM_039078393.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078393.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..877
                     /gene="Tspo"
                     /gene_synonym="Bzrp; MBR; Ptbzr; PTBZR02; RATPTBZR02"
                     /note="translocator protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 40 ESTs, 67 long SRA reads, 6 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 229 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:24230"
                     /db_xref="RGD:2228"
     CDS             129..638
                     /gene="Tspo"
                     /gene_synonym="Bzrp; MBR; Ptbzr; PTBZR02; RATPTBZR02"
                     /codon_start=1
                     /product="translocator protein isoform X1"
                     /protein_id="XP_038934321.1"
                     /db_xref="GeneID:24230"
                     /db_xref="RGD:2228"
                     /translation="MSQSWVPAVGLTLVPSLGGFMGAYFVRGEGLRWYASLQKPSWHP
                     PRWTLAPIWGTLYSAMGYGSYIIWKELGGFTEEAMVPLGLYTGQLALNWAWPPIFFGA
                     RQMGWALVDLMLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATMLNYYVWRDNSG
                     RRGGSRLTE"
ORIGIN      
        1 ggggcgaggc gaggcggggt cagcggttac caacctctac gcgcagcgca gtgtccttca
       61 cggagcagcc agcgactgcg tgagcgaggc tgtgggtaga tctttccaga acagcagttg
      121 caatcactat gtctcaatcc tgggtacccg ccgtgggcct cactctggtg cccagcctgg
      181 ggggcttcat gggagcctac tttgtgcgtg gtgagggcct ccgctggtat gctagcttgc
      241 agaaaccctc ctggcatccg cctcgctgga cactcgctcc catctggggc acactgtatt
      301 cggccatggg gtatggctcc tacataatct ggaaagagct gggaggtttc acagaggagg
      361 ctatggttcc cttgggtctc tacactggtc agctggctct gaactgggca tggcccccca
      421 tcttctttgg tgcccggcag atgggctggg ctttggtgga cctcatgctt gtcagtgggg
      481 tggcaaccgc cactaccctg gcttggcacc gagtgagccc accggctgcc cgcttgctgt
      541 atccttacct ggcctggctg gcctttgcca ccatgctcaa ctactatgta tggcgtgata
      601 actctggtcg gcgagggggc tcccggctca cagagtgagg acacctagcc atcaggaatg
      661 cagccctgcc agccaggcat catgggttga ggtcatcctg ctttcatgac cattgggcct
      721 gctggtctac ctggtcttag tccaggaagc caccaggtag gtcaaggtgg tcagtgctaa
      781 gtcccatgcg gggacagttg tacctgcttt tctgcactgc tgcaggcgtg ccctaggagc
      841 atggggcctt taaagctaaa taaagtcttt aacttca
//
