LOCUS       XM_039099176            2485 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thrombospondin-type laminin G domain
            and EAR repeats (Tspear), transcript variant X1, mRNA.
ACCESSION   XM_039099176
VERSION     XM_039099176.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2485
                     /gene="Tspear"
                     /note="thrombospondin-type laminin G domain and EAR
                     repeats; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:365546"
                     /db_xref="RGD:1563108"
     CDS             204..2072
                     /gene="Tspear"
                     /codon_start=1
                     /product="thrombospondin-type laminin G domain and EAR
                     repeat-containing protein isoform X1"
                     /protein_id="XP_038955104.1"
                     /db_xref="GeneID:365546"
                     /db_xref="RGD:1563108"
                     /translation="MVQAEGVRGLQFSATEPRTTSFPASRIFSSCHLFPEEFSIIVTL
                     RVPNLPPKKNEYLLSLLAEERDRDVLLLGLRYSPTQLHFLFLSEDLAGAWQTRVSFRS
                     PGLMDSRWHTLILAVSQGSFSLTMDCGLPVDIMADVPFPPTLSVRGARFFIGSRKRTK
                     GRFTGVIRQLVLLPGSDATPQLCPSRNARLAELSIPQVLKRLTEKPDDKEVLKYPYEA
                     DMKVTLGSRPPCTKAEGAQFWFDAAQKGLYLCAGSEWVSVLAAKTKLDYVEEHQSLHT
                     NSETLGIEVFNIPGVGLFAAAANRKARSAIYKWSDGKFVSYQNIATHQAQSWRHFTIG
                     KKIFLAVANFGPNERGQEFSVIYKWSPRKLKFTLYQRIATHSARDWEAFEVDGEHFLV
                     VANHREGDNHNIDSVVYRWNPSSQLFEANQSIATSGAYDWEFFTVGPYSFLVVANTFN
                     GTSTQVHSHLYIWLVGAFQLFQSFLTFGAADWEVFHIGERIFLAVANSHSYDVQMQAQ
                     NDTYILSSVIYELNVTAQTFVKFQDIPTCSALDWEFFSVGEDHFLVVANSFDGNTFSV
                     NSIIYRWQGYEGFVAVHKLPTFGCRDWEAFNTTAGSYLIYSSAKEPLSRVLKLRTD"
ORIGIN      
        1 cgtcacttcc tgtcttctct ctgcttctgc taagatgtga gcaggcgcct caagtgcctg
       61 ctgctgcagc tgagctcagc tttgcccttc ccccgagtga agggctacac cttcaaaccc
      121 tgcctccctt ctcctcagac cttcgccccc tggacatcct ggcggaggtg gtccctttgg
      181 atggagctac aagtgggatc cggatggtgc aggcagaagg tgtgcggggc ctccagttct
      241 cagccaccga gccccggacc acgagcttcc ctgcttctag aatcttctcc agctgccatc
      301 tattccctga agaattctcc atcatcgtca ccttgagagt ccccaacctt ccacccaaga
      361 agaacgaata cctgctctcc ctgctggcgg aggagaggga cagggacgtg ctactgctcg
      421 gcctgaggta ctcacccaca cagctgcact tcctatttct cagcgaggac ctggctggtg
      481 cctggcagac ccgtgtgtcc ttccggagcc ctggcctcat ggacagccga tggcatactc
      541 tgatcttggc tgtgtctcaa ggatcctttt ccctcaccat ggactgtggc ctcccagtgg
      601 acataatggc ggatgttccc ttcccaccca ccctatcagt aagaggagcc cggttcttca
      661 tcggcagccg gaagagaacc aaaggccgat tcacaggcgt gataaggcag ctggtgctgc
      721 tgcctggctc agatgccacc ccacagctgt gtcccagcag gaacgccagg ctggctgagc
      781 tgtccatccc ccaggtgctg aagagactca cggagaagcc tgatgacaaa gaggtgctaa
      841 aatatcccta tgaagctgac atgaaagtaa ccttgggatc ccggccaccg tgcaccaagg
      901 cagagggtgc ccagttctgg ttcgatgccg cccaaaaggg gctgtacctg tgtgccggca
      961 gcgaatgggt ctccgtgttg gcagccaaga ccaagctgga ctacgtagaa gaacaccaga
     1021 gtctgcacac caactcagag acactgggca tcgaggtgtt caatatcccc ggtgtggggc
     1081 tctttgcagc cgcagccaat cggaaggcta gatcagccat ctataagtgg tcagatggga
     1141 aattcgtctc ctaccagaac attgccacgc accaggcaca gtcatggcga cacttcacca
     1201 ttgggaaaaa gatcttcctg gccgtggcta actttgggcc aaatgaaagg ggtcaggagt
     1261 tctcagtcat ctacaaatgg agccccagaa agctgaagtt caccctttac cagaggatcg
     1321 ccacccacag tgcccgtgac tgggaggcct ttgaggtgga cggagagcac ttcctggtgg
     1381 tggccaacca ccgagaaggg gacaaccaca acatcgacag cgtggtctac aggtggaacc
     1441 ccagcagtca gctctttgaa gccaaccaat ctattgccac gtccggtgcc tacgactggg
     1501 agttcttcac cgtggggcct tactccttcc tggtggtggc caacaccttc aatggcacct
     1561 ccacccaggt gcattcccac ctgtacatct ggcttgttgg tgccttccag ctcttccagt
     1621 cattcctgac gttcggtgct gcggactggg aggtcttcca cattggcgag aggatcttcc
     1681 tcgccgtggc aaacagtcac agctacgacg tgcagatgca ggcacaaaat gacacctaca
     1741 tcctcagttc cgtcatctac gagctgaacg tcaccgctca gacctttgtc aagttccagg
     1801 acatccccac ctgcagcgcg ctggactggg agttcttctc ggtgggagaa gatcacttcc
     1861 tggtggtcgc gaactccttt gacggaaaca ccttctcagt gaacagtatt atttacaggt
     1921 ggcaaggcta tgagggcttc gtggcagtgc acaaactccc caccttcggc tgccgcgact
     1981 gggaggcctt taacaccact gccggttctt acctcatcta ctccagtgcc aaagagcccc
     2041 tctccagggt cctgaagctg agaaccgact gaagtcaccc tggactccgc tgcctccctc
     2101 caacccccac cagctagatg tgtgcagcag gcaggaccca tccagctctc tctggtcctg
     2161 gggcaggtga aggtgtctgt acacctctct actacactct ctgagctggc tctttgctcc
     2221 ctcccctggc tgaggggggc actgtaccag aaccacagtc ctggtgactg gcggccatat
     2281 ttcaggtgac cctgggatcc ttcaggctga ggcccagggc tgccacccaa tcttggtgct
     2341 cccagcctgt tcctgcagga attctgcctt aaagggacag tggctattca cagtttacct
     2401 caaatacata ggccctagaa gtctctaggg ctccagctct cccagctacc cctgctgtgc
     2461 agccccgatg cacgtgccac gacca
//
