LOCUS       NM_001107890            4202 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus tetraspanin 9 (Tspan9), mRNA.
ACCESSION   NM_001107890 XM_001067955 XM_232372
VERSION     NM_001107890.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4202)
  AUTHORS   Kuo JC, Han X, Hsiao CT, Yates JR 3rd and Waterman CM.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   2  (bases 1 to 4202)
  AUTHORS   Kotha J, Zhang C, Longhurst CM, Lu Y, Jacobs J, Cheng Y and
            Jennings LK.
  TITLE     Functional relevance of tetraspanin CD9 in vascular smooth muscle
            cell injury phenotypes: a novel target for the prevention of
            neointimal hyperplasia
  JOURNAL   Atherosclerosis 203 (2), 377-386 (2009)
   PUBMED   18799160
  REMARK    GeneRIF: tetraspanin CD9 has a role in determining vascular smooth
            muscle cell injury phenotypes
REFERENCE   3  (bases 1 to 4202)
  AUTHORS   Protty MB, Watkins NA, Colombo D, Thomas SG, Heath VL, Herbert JM,
            Bicknell R, Senis YA, Ashman LK, Berditchevski F, Ouwehand WH,
            Watson SP and Tomlinson MG.
  TITLE     Identification of Tspan9 as a novel platelet tetraspanin and the
            collagen receptor GPVI as a component of tetraspanin microdomains
  JOURNAL   Biochem J 417 (1), 391-400 (2009)
   PUBMED   18795891
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473964.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_232372.4, XM_001067955.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ096782.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760433 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4202
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..4202
                     /gene="Tspan9"
                     /gene_synonym="RGD1304740"
                     /note="tetraspanin 9"
                     /db_xref="GeneID:312728"
                     /db_xref="RGD:1304740"
     exon            1..432
                     /gene="Tspan9"
                     /gene_synonym="RGD1304740"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..1089
                     /gene="Tspan9"
                     /gene_synonym="RGD1304740"
                     /codon_start=1
                     /product="tetraspanin-9"
                     /protein_id="NP_001101360.1"
                     /db_xref="GeneID:312728"
                     /db_xref="RGD:1304740"
                     /translation="MEKSSSEDSSIHRSPSLDSKDSDFAKPSTSGRPFGRGFTAGAFY
                     GTAGSRGQSRTEAGIKTDKYNAPKGSKYVVFYLDLSFVFLLEFKKCNMARGCLCCLKY
                     MMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVMVTGF
                     LGCLGAIKENKCLLLSFFIVLLIILLAELILLILFFVYMDKVNENAKQDLKEGLLLYN
                     TENNVGLKNAWNIIQAEMRCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRNSTTPL
                     WKTGCYEKVKLWFDDNKHVLGTVGMCFLIMQILGMAFSMTLFQHIHRTGKKYDA"
     exon            433..624
                     /gene="Tspan9"
                     /gene_synonym="RGD1304740"
                     /inference="alignment:Splign:2.1.0"
     exon            625..699
                     /gene="Tspan9"
                     /gene_synonym="RGD1304740"
                     /inference="alignment:Splign:2.1.0"
     exon            700..801
                     /gene="Tspan9"
                     /gene_synonym="RGD1304740"
                     /inference="alignment:Splign:2.1.0"
     exon            802..933
                     /gene="Tspan9"
                     /gene_synonym="RGD1304740"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1017
                     /gene="Tspan9"
                     /gene_synonym="RGD1304740"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..4202
                     /gene="Tspan9"
                     /gene_synonym="RGD1304740"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctcgctcag aacccgagcc cgaccggggt gccccctccg tcccattctg ggagcaatgc
       61 cccccgcccc tcgtgctccc cgggaacgag gcgagcatgg agaagtcgag tagcgaggat
      121 tcttcgatcc accggagtcc atctttggac agcaaggact cggactttgc caagccgtcc
      181 acctctggcc gcccgttcgg ccgcggcttc acggctggcg ccttctacgg caccgcgggt
      241 tcgcggggtc agagccgcac ggaggccggc attaagactg acaagtacaa tgcgcccaaa
      301 ggcagcaagt acgtggtgtt ttacctggac ctgtcctttg tgttcctcct agaatttaag
      361 aagtgcaaca tggccagggg ctgtctctgc tgcttgaagt acatgatgtt cctcttcaat
      421 ttgatattct ggctctgtgg ctgtggactg cttggagtgg gcatctggct ctctgtgtcc
      481 caaggcaact ttgccacctt ctcccccagt ttcccctcgc tgtctgcagc caaccttgtc
      541 atcgccatag gcaccatcgt catggtgacg ggtttcctgg gctgcctggg ggccatcaag
      601 gaaaacaagt gtttgctcct cagcttcttc atcgtcctgt tgatcatcct gctggcagag
      661 ctaattcttc tcatcctctt cttcgtctac atggacaagg tgaacgagaa tgccaagcag
      721 gacctgaaag aggggctact gctgtacaac actgagaaca acgtggggct caagaatgcc
      781 tggaatatca tccaggccga gatgcggtgt tgtggggtca ctgactatac agactggtat
      841 ccagtgctcg gggagaacac agttcctgac cgctgctgca tggagaattc ccagggttgc
      901 gggcgcaaca gcaccacccc cttgtggaaa acgggctgct acgagaaggt gaagctgtgg
      961 tttgatgata acaagcacgt gctgggtacc gtggggatgt gcttccttat catgcagatc
     1021 ctgggaatgg ccttttccat gactctgttc cagcacatcc accggacggg taaaaagtac
     1081 gatgcctgag tgtttggcag cgcctggctc cacttggaca ctgtgtgtgc cagggaagag
     1141 gacctgagtt gtgtgtcctg cctgctctct gatggccacc ctgcaccccc tgccagcctg
     1201 ccctcccctg cccacatcct tggccttaga cctcgcggag agcagaggcc cagggaggag
     1261 gcatcatgca gagacctcag ggtttgggca cctggattcc tgcacttgcc aaagacgcca
     1321 gggtgggcag ggtgtcaaca aggaagcccc ttcaatgacg ggtttctgcc cctggccttc
     1381 ctcacattga cacttgttcc tgtgtgggat ggagagtctg ccccaccgag gccactgccg
     1441 tccatggctg cccagccaga gagcctgcca gggtgcagta tggcaccgcc aggtcaggcc
     1501 tcctggagca ccctgcccgg gtttttatat actatagtgt aacttttttt ttaaatttta
     1561 ctctgattat gattattcag gaatattatc tctcagataa gtttagggtt agttttctga
     1621 tttataactt tttactgtgt tgatttccat aatggtttga gtttcctttt cccgtgggtg
     1681 gggatgggta gggagagagg acctccatcc actttcagta aggacatacc actgtgcaac
     1741 actcgtgagg ctgtagggtg agaagtgcca gccttttccc caggactcac ctcgagggag
     1801 aggatgcagt cacagtatgg ggccttacct ggcctggaga ccatggatga ggccagaaga
     1861 ggatacaaag caaggggcct cctactctgg ggggagagga ggaagaggat gctgcttggg
     1921 ccgggaagcc gcgtcaatgg ggactgttta ggttaggaga tagtgaaatg ctgtgctggg
     1981 aggaggggcg gtcagaacag tttgtgacat ttcttcctct tcctcccttg gtcctctgtg
     2041 agcttccccc tgacccatga gcatcctgca tcccaaatgg tcactctcac acattcctgc
     2101 tgcaaattcc cctggctcag accctgctct gctcagcctg gtctggacag tggaagcaga
     2161 cacattcatc tgcctaggct taagcagagt ctcaggacta cccacgaagg gaggcagagt
     2221 tggcatccac ggccaacccc accagactca ctcattgctt actgccccgc tgaggggaaa
     2281 ggaaagggcc atatgggtct caggaccatt cctccttagg atccattgct gtccatgctg
     2341 gggggcaggc accacatccc atgtaacctc aaagaggcaa gatacagaaa cacttgagat
     2401 gccaggcttc cattgctcca gcagtcctgg ggagaaggcc ctcattaaat gcctggtgct
     2461 aggcgtggga gatggaggca ggccgtatcc caaggtgtag cagccatctt gacggcactg
     2521 atacccagcg tctcctttca taaagaccag ggcctgtggg actggccaag cgcccctctg
     2581 gggtccagag caactcattc ttgggccttc attcagtagc tgctcttctc atgccgtccg
     2641 gctctttccc accaggccag gtcttccctg atcttgccat gacatccaac caacctataa
     2701 acccctgacc tccttgaata acaggcagtg cgtgacccgg ggtgtggaac tttcagtgtg
     2761 gtcaggattc aagtgttggg gatgagagag gacagcaggg agctcttagc aaattgggcc
     2821 aagaagttgc cggttccagc acgtggagtt gtggtgctgt ggaatgaaag ccacctccgt
     2881 ggaacctcca agatgcagac agagtccagg tagacccagt aaacagtcag aaaacaagtg
     2941 tggcgcctgc tgcattatga gtgttggtgg gtggtagcac gggtttgttt atgctatctg
     3001 tgggtgttta aacttcatta acgtcaacat caaagtccca gaagcacttg ccctccttcc
     3061 ctcctcaggc ctctagagtg cttcagggtg gtgctggtcc ctggagcctt ggccaaagtc
     3121 ccccaccctc accaacccca cctcagctgc ctgcgcggca gagccaggtc ataagtccca
     3181 aactgccttt ttgttttagc tgtgtatggc cgtgcagtca tctgtagagt cttcatgggg
     3241 cagacgtctc catgcacaca gaagacgtcc aagaaccttg cttatcctgg ggaaatggct
     3301 tttatgtggc cttacaaggc cacaccaaat aaggccaggg gagaaggctc agctctactc
     3361 caatactctt ggctctgaga acgctgcagt cctgccacga gacccttccc accttacctg
     3421 tggcttccct ggcctaacgc agagccattt ccttcaggtc ccacacaagc aatttgtaga
     3481 cctgactcag aaagtcctct tggtttgccg gtgacctcaa ggaaatgcct gacgtagacc
     3541 ctggcatttc tccatggctg actgactggc agtggggctc agagggtagg gtctggaaac
     3601 tgctctcaga tgactgacac atgtcaggat gcaagtctcc ttgtacctct agactctgag
     3661 ctggaacagc gtcgtcctgt ctctccgcca gcctggacca gcgcctcagc tgtccccctt
     3721 gcacatgctc tgacctgact taaaattaag tggtcaagcc tccaggcact tcaggtggat
     3781 ggaattggtt gtcccctcct ctctggaccc ctgcccaccc tctggtggag gtgctaacta
     3841 gcagggatat ggcacaggac tgagctaggt gccagatgct tggggtctgt tctttgtccc
     3901 atgacccctt ggtctggcac cccttctcac gttcctgttc tctcatttcc ctcccctcca
     3961 cgatggtgga gttctggcct cccctccctc agtgggcatt ctaaggagtg agcctttggg
     4021 cctccacttg ccttgctgcc cctgggtggc cagagagcca ggagtgcacg cttattggtt
     4081 tcgaatgcac tttctgcttg caatgccttg tctgcagttc ctccatccca ggtcccgctt
     4141 taacgaacac catgttttta gcatgttttt aaataaaagc tgatcatgtg tcaaaagcac
     4201 ga
//
