LOCUS       NM_001107750            3619 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tetraspanin 18 (Tspan18), mRNA.
ACCESSION   NM_001107750 XM_001078551 XM_006234573 XM_230297
VERSION     NM_001107750.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3619)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Aug 4, 2021 this sequence version replaced
            XM_006234573.4, NM_001107750.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.17152.1,
                                           SRR26643295.14307.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-236               JAXUCZ010000003.1  99755035-99755270   c
            237-317             JAXUCZ010000003.1  99730120-99730200   c
            318-399             JAXUCZ010000003.1  99636862-99636943   c
            400-472             JAXUCZ010000003.1  99634890-99634962   c
            473-667             JAXUCZ010000003.1  99632523-99632717   c
            668-742             JAXUCZ010000003.1  99624309-99624383   c
            743-841             JAXUCZ010000003.1  99623318-99623416   c
            842-1024            JAXUCZ010000003.1  99622311-99622493   c
            1025-1108           JAXUCZ010000003.1  99619197-99619280   c
            1109-3619           JAXUCZ010000003.1  99615466-99617976   c
FEATURES             Location/Qualifiers
     source          1..3619
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q31"
     gene            1..3619
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /note="tetraspanin 18"
                     /db_xref="GeneID:311210"
                     /db_xref="RGD:1560411"
     exon            1..236
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
     exon            237..317
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
     exon            318..399
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
     exon            400..472
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
     CDS             410..1156
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /codon_start=1
                     /product="tetraspanin-18"
                     /protein_id="NP_001101220.1"
                     /db_xref="GeneID:311210"
                     /db_xref="RGD:1560411"
                     /translation="MEGDCLSCMKYLMFVFNFFVFLGGACLLGVGIWVLVDPTGFREI
                     VATNPLLTTGAYVVLAMGGLLFLLGFLGCCGAVRENRCLLLFFFLFILIIFLVELSAA
                     ILAFIFREHLTREFFTKELTKHYQGDNDTDVFSATWNSVMITFGCCGVNGPEDFKLAS
                     VFRLLTLDTEEVPKACCRREPQTRDGVVLSREECQLGRNPFINKQGCYTVILNTFETY
                     VYLAGAFAIGVLAIELFLMVFAMCLFRGIQ"
     exon            473..667
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
     exon            668..742
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
     exon            743..841
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
     exon            842..1024
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
     exon            1025..1108
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..3619
                     /gene="Tspan18"
                     /gene_synonym="RGD1560411"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgctgcagc tgccgccggc gtctcagggg ctgcaggctg caggaggacg caacgctgtg
       61 cgattctgaa gcccagccac gccaggccgc cgggccctgg cccccagcgg gcgtcgccgc
      121 tcctcgtcgc cttgacgcct ggcccaacgc ctcggcgcag gactaccagt gccccgcaag
      181 ctgcgagcgc actctgcgcc tggggaaact ttaccccgcg gccgagtctc tgccagagtt
      241 gctctgaagc tgtcatcaga agacttcaaa catatctctc agttccttcc cagaaaggaa
      301 aaggacagct agaagaggac gagctgggct gctgagagac atacctgagc ccctctaact
      361 aggagacttc atcctgccga ctcctggaga actacccagg tggagaacca tggagggcga
      421 ctgtctgagc tgcatgaagt atctgatgtt tgttttcaat ttcttcgtat ttctgggagg
      481 tgcctgtctt ctgggcgttg gcatctgggt cctggtggat cccaccggct tccgagagat
      541 cgtggctacc aaccccctgc tgaccaccgg cgcctacgtt gtactggcca tgggcggtct
      601 gctgtttctt ctgggcttcc tgggctgctg cggggctgtc cgagagaaca ggtgtctgct
      661 gctatttttt ttcctgttta tcctgatcat cttcctggta gagctctcag cagccatcct
      721 ggccttcatc ttccgggaac acctcacccg agagttcttc accaaggagc ttaccaagca
      781 ctaccaaggc gataatgaca cggacgtttt ctctgccacc tggaattccg tcatgatcac
      841 atttggctgc tgtggggtca acggacctga agacttcaag ctggcctcag tgtttcggct
      901 gctaacactg gacactgagg aggtgcccaa ggcctgctgt cggagagaac cccagactcg
      961 agatggggtg gtactgagca gggaggagtg ccagcttggg aggaatccat tcataaacaa
     1021 gcagggctgt tacactgtga tcctcaacac cttcgaaacc tatgtctacc tggctggagc
     1081 ctttgccatt ggggtgctgg ctattgagct cttcctcatg gtctttgcca tgtgcctctt
     1141 ccggggcatc cagtaggcct tggcctgaag acactcagcc caccactgcc cagcagccag
     1201 ccccctccct tccctgtcct ctggccccag gggaggaagc aaagccagcc caaacagcca
     1261 ggagcataaa gttaatgttt aaaaaaaaaa cagaacaaag acagacatga accgaagggg
     1321 cctcatccac ccagacgggt catgggctct ataaggacct agggctggcc tgagatcaac
     1381 tgttcctgag accaaaagtt catcagcctc agagccactt ggccctgtca gactggagtg
     1441 tcccttggcc tgggttcccc tctcttagca tttccaggat ctgagcaacc aggaggtgga
     1501 aacacaccct ggaggaggag ctcaggcccc aggagactgc ttttcacaac acaaggacag
     1561 actctgcagc accatctgcc ggaaaatgaa gctgtcccta cgtctggctg gctgagagtg
     1621 gccatgtgtg gacactggat cagaaggtgg ccctttcatt tccacatatt ttagatcaaa
     1681 gcctctccat ggcccagaaa agggcagtgg cccatccaca gtcacatagc atgtgcatga
     1741 aggtcatctc caggcttctg tcactccagc caggactcca ccccaatgta aactgaccag
     1801 gaactgcccg gaccaagttc tacagctgag aaagttcaca ctgtgtccac tctgccctgc
     1861 ttgtacctct gtcagagatc caactgtgat acatcacctg tccccatggg ccatacccca
     1921 tccctgttct cccaggtgga agacacccca atattgttca tttctctctt tctacccaga
     1981 gctgaggctt aaatatgttc ttcaaggttc ctgccaagaa ttctcccctt acatacctcc
     2041 acgtatggat ggagttcact acctcccaat gcagcctcct gccttcagat gttctgacat
     2101 caccaccacc tcagcagaca gaaggggttt tcattttcca ttcatgtacc ccttcactct
     2161 ctctccttcc tagagattaa ggtcatgcct cttatctgca gacttaaccc cacagcatct
     2221 cctaccatga tactttttgt ccttttgctg tacatgtact ttgttattct ctctaggctc
     2281 agattaccca gactaacagg ctcacaaaca gccaaaacac acacacacac acacacacac
     2341 acacacacac acacacacac acacacacac acacacttga actgcagact aggttatctg
     2401 gttgcaaaat gcctgaccct gccaggacca tgttgaatcc attagtgttg tcggtcagga
     2461 tctcaagttt gattaattat gtctgccaag ggcacagcaa tgggggcagt ggtggaagga
     2521 acaactaggt gcctgctctc ctctctcaga tggaagagcc tggctccagc ctccctttgc
     2581 cttcctgcca cctgggagtc attgctataa cctgctctgt gctgctgtct ggcttcaagg
     2641 agacactcct cccatttcct ctcctcttca tgtggtcctc acccatcctg gccttcccag
     2701 gggtctctga gtgccataca gacaacttac ttgacatccc cataaattaa acagtgagct
     2761 ctctagaggc tgagtcacca ggttaggggg cccctctgct ggcttctacc ccagactaag
     2821 aagacccagg ctgactcaga acccagcata tactggactc taactgtcta gagaggcaaa
     2881 tgactcagct attgattgga agctcatggc cagactgagg aggagcccaa ccacagtggc
     2941 tgctacccag aactagccca ggcttccaga aatgggcagg gttggggaca gagagggctg
     3001 agaaggcaga tatcaaacct aggcacggcc agggtagatc agagactctc accagaactt
     3061 tccatactta tgttgtagtg ctccaaagta gcccagattc aacccagctg tagatccagt
     3121 ttctcagcat cctcatagga ccagacagag accactgcag tcttccccct ctgaggttgt
     3181 agacatctac aaggctgtct gacgacatcc tgatggcact tggtgagctg ctctgtgtac
     3241 tcccagagaa ggagagggga accctcccaa ggggagccct tcctttacct ctcaccccag
     3301 aaccaacctc acctagatgc agagaccctc agcccctgcc tgtcccagag ccacccagac
     3361 agttgacagg caaggagcga aggctggatc tgtgactcat gctcccctca gcaccctgtc
     3421 ccaagcccct ggcctgcctg agtacacaca cacacacaca catacacaca cacacacaca
     3481 tatgttaaag tctattttgg aatttgtaaa tgtcccttgc agtaggaaac agagctaatt
     3541 tatcattgta tctcccaagt cgcccctttt tatattctat atcaagagaa attttgtaat
     3601 ataaaacagg acaccacac
//
