LOCUS       XM_008762790             967 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tetraspanin 12 (Tspan12), transcript
            variant X3, mRNA.
ACCESSION   XM_008762790
VERSION     XM_008762790.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008762790.3.
            
            On Jan 21, 2021 this sequence version replaced XM_008762790.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..967
                     /gene="Tspan12"
                     /gene_synonym="Tm4sf12"
                     /note="tetraspanin 12; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 19 ESTs, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362326"
                     /db_xref="RGD:1311102"
     CDS             212..952
                     /gene="Tspan12"
                     /gene_synonym="Tm4sf12"
                     /codon_start=1
                     /product="tetraspanin-12 isoform X3"
                     /protein_id="XP_008761012.1"
                     /db_xref="GeneID:362326"
                     /db_xref="RGD:1311102"
                     /translation="MAREDSVKCLRCLLYALNLLFWLMSISVLAVSAWMRDYLNNVLT
                     LTAETRVEEAVILTYFPVVHPVMIAVCCFLIIVGMLGYCGTVKRNLLLLAWYFGTLLV
                     IFCVELACGVWTYEQEVMVPVQWSDMVTLKARMTNYGLPRYRWLTHAWNYFQREFKCC
                     GVVYFTDWLEMTEMDWPPDSCCVREFPGCSKQAHQEDLSDLYQECGQEKEKLQIIEIL
                     DLKNPSPVSTKPQSKKSKRSFLLERASS"
ORIGIN      
        1 acggctgggg agaggaaggc gagcaagcgt ctgctgttgg agccaatgca gccctttggc
       61 tctccgcgag gagcgtctct ccccggatga gtgtctgcct tgtgtccccg agtgtccccc
      121 cgcaggagcg cagctcgaac gatcgctgct gctctgcttg gaccagtaga atgtggtgag
      181 aggatggggc ttctccctcc caagactcac aatggccaga gaagattccg tgaagtgttt
      241 gcgctgcttg ctctacgccc tcaacctgct cttctggtta atgtccatca gtgtcttggc
      301 agtttctgct tggatgaggg actacctgaa taacgttttg actttgactg cagagacaag
      361 ggtagaagag gcggtcatct taacttactt ccctgtggtt caccccgtca tgattgctgt
      421 ctgctgtttc cttatcatcg tgggaatgct gggatactgt gggaccgtga aaaggaatct
      481 gttgcttctt gcatggtact ttggaacttt actcgtgatc ttctgcgtag aactggcttg
      541 tggtgtgtgg acatacgagc aggaagttat ggtgccagta cagtggtcag atatggttac
      601 tttgaaagcc agaatgacaa attacggctt acccaggtat aggtggctta cgcatgcttg
      661 gaactatttt cagagagagt ttaagtgctg cggagtggtc tacttcaccg attggttgga
      721 aatgacagaa atggactggc ccccagactc ctgctgtgtt agggagttcc caggatgctc
      781 caagcaggct caccaggaag acctcagtga cctgtaccaa gagtgtggcc aggaaaagga
      841 gaaactgcag attatcgaaa ttcttgacct gaaaaatccg tctccggtta gcacaaaacc
      901 acagagcaag aagagcaagc ggagttttct gttagaacga gcaagcagtt gaacagccca
      961 gatggac
//
