LOCUS       NM_001024262            3809 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Rattus norvegicus tetraspanin 11 (Tspan11), mRNA.
ACCESSION   NM_001024262 XM_232371
VERSION     NM_001024262.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3809)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC092652.1.
            
            On May 27, 2005 this sequence version replaced XM_232371.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC092652.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760384, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3809
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..3809
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /note="tetraspanin 11"
                     /db_xref="GeneID:312727"
                     /db_xref="RGD:1305424"
     exon            1..123
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /inference="alignment:Splign:2.1.0"
     exon            124..218
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /inference="alignment:Splign:2.1.0"
     CDS             135..896
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /note="tspan-11"
                     /codon_start=1
                     /product="tetraspanin-11"
                     /protein_id="NP_001019433.1"
                     /db_xref="GeneID:312727"
                     /db_xref="RGD:1305424"
                     /translation="MAHCKTEQDDWLLAHLKYLLFIFNFFFWVGGAAVMAVGIWTLVE
                     KSVYLSILASSTFAASAYVLIFVGGLVMTTGFLGFGAIIREQKSCLSTYFCLLLAIFL
                     VELVAGVLAHVYYQRLSDELKRHLHSTLTEHYGQPGAAEITASVDRLQQDFKCCGSNS
                     SADWQHSVYILSQEAIGRQVPDSCCKTVVARCGQRAHPSNIYKVEGGCMAKLEQFLAD
                     HLLLMGAVGIGVACLQICGMVLTCCLHRRLQQHFY"
     exon            219..410
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /inference="alignment:Splign:2.1.0"
     exon            411..485
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /inference="alignment:Splign:2.1.0"
     exon            486..590
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /inference="alignment:Splign:2.1.0"
     exon            591..749
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /inference="alignment:Splign:2.1.0"
     exon            750..836
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /inference="alignment:Splign:2.1.0"
     exon            837..3784
                     /gene="Tspan11"
                     /gene_synonym="RGD1305424"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcagccggc cacggccacc gcgggccagt gggcagggag cgggctgctg tggccaggac
       61 aaccacaatc actgctctgg actccggatc cctggctgca tccagcctgg cggttgtggc
      121 ccggcccagc tgccatggcg cactgcaaga cagagcagga tgactggctg ctggcccacc
      181 tgaagtacct gctttttatc ttcaacttct tcttctgggt aggtggggca gctgtcatgg
      241 ccgtgggtat ctggacactg gtggagaaga gtgtttacct cagcatcttg gcctccagca
      301 cgtttgctgc ctctgcctac gtcctcattt tcgttggcgg tcttgtcatg acaactggct
      361 tcctgggctt cggggccatc atccgggagc agaagagctg tctctccaca tatttctgcc
      421 tgttgctggc catcttcctg gtggagctgg tggcaggggt cctggcgcat gtgtactacc
      481 agaggctaag cgatgaactg aagcggcatc tgcacagcac cctgactgag cactatgggc
      541 agcccggagc cgcagagatc acagcctcag tggaccgtct gcagcaggat ttcaaatgtt
      601 gtggcagtaa cagctcagcc gactggcagc acagcgtata catcttgtct caggaagcca
      661 tcggtcgcca agtgcccgac agctgctgca agacagtggt agcccgctgt ggtcagcggg
      721 cccacccctc caacatctac aaggtagagg gaggctgcat ggccaagctg gagcagttct
      781 tggctgacca cctgctgctc atgggagcag tgggcattgg ggtagcctgt cttcagatct
      841 gcggaatggt tctcacctgc tgcttgcacc gaaggctcca gcagcacttt tattaaagga
      901 tacccctgta gcctgctgac tggcccacac caaagcccac atctccacat cctgaaccag
      961 gcctgcaaag tcaatgctgg ggccatggac tccctccacc ctgtgcagag gccaccaaat
     1021 gccggtgatt gtgactcctg tgtatcctgg ctgggcaggg tcctccgctc actcctccac
     1081 ttctaagcac ttagccactg ccagaatcct tggcaaggga tggtcctggc aagagacaga
     1141 cacagccctt tgccaggcac tgggacactg gactacgggg aggccatatt catctcagag
     1201 tctggaatag aagatgtccc tccaagactc ctgcagggct tggtgtgcgc ttctcatggg
     1261 cacggggccc caactgggtc tcctcagaga aaagcagcac tttgggcaca ctgggttagc
     1321 tcaccccttc ccaaaatcta gctggttttt cagtgtcccc cacagaatag ccagccatat
     1381 tcttcctgta aggcacgggg caggagccat ctaaggtggc atcttaaggc tgttgacgcc
     1441 accaggacag ggcactaagg aggcaggttg gttgctacac tcaggagaga gtcacaggat
     1501 ggccacaagc cccagcctct ggtcctggtc ccaggcttga ctcccaaagt gtaaaactct
     1561 tccccagggg ggcataccac agtctcagct cctgaggaga ggaaactgtg gggaaggagg
     1621 taccctgcct gtaccccatt tcctggggac cccactgttt ctcttccatg cgttctccac
     1681 ttccttctcc gctatcctgg aatagacgcc atcatcccct cctttgttcc cctctctagt
     1741 catggaatga cacacagagg atatttcagg ggaggggggc tcatgtgtta aaagacacag
     1801 aaagaaaatc ctagaaaaat taaaggttgg taataggaat caactcatag acaaccatag
     1861 ggaccccctc cgattactat tactgtaggc agctttgcac gccaggactc cactcccagc
     1921 ttctgcaccc ctatcctggg tcctgctcat ctctccagaa cagcagatct cagttcccac
     1981 agatcctgct gagctgggtc agttgctgga gggagatgag ctcccactca tacttgggtg
     2041 gaccaagggc cactgttgct gtcaccggca taggtgggat tccactctca gggcagaaag
     2101 tagctgtgtg gacagaggga gcatcaggct ctcgggtcag aaaccctccc ccactctggc
     2161 atctcggggg gctacttgga gcctgcactg gcttgtgtca tccacctgaa ggagcctggg
     2221 ttgtctgtac agacagtaaa aagaagacat tcccaacact tccagactac actatggcta
     2281 agagaaaaac cttaactgcc ctcctctcca tctgcagata ctcagaggct ggctatggtt
     2341 cctgagttta tagagggagg attgaggaga aaaagctgtg gggctcagac cctcttcttc
     2401 ccaaaaaggc ccctgagggg ggcaatagtg atcaaaggga tactgtggcc tcgggtatct
     2461 gctttggtag gcttcttcag ggagagggtc agaggtgaca agcgggcgcc atttgtacag
     2521 acttgaggca gaggtagttc aggagagcag ggacatggcc acagtcagag ctgcagggtg
     2581 agcggacagc cccaaatgtg acttccttga tcatacatca gccttggtga caagatgggg
     2641 tcagaggaca tgagacacat agtaggccag attctgtcca gcagctgcgg agagaaggct
     2701 gcagccaagt ctgtggtgag gtgggcccat cagaggccag aacaggtgct gcgtgtgggg
     2761 ggacgtacag aaggtcagag cgaggagcca ctgtgagctc agaatctgcc cctctgggca
     2821 gcttccaagg ttttgaagtc agggggataa tggatcagtt acaaccctgt cagctttgaa
     2881 aacaccccct tgcccattgg ctttactggg ctaggggcaa aaaggaaaaa gaagcgaggg
     2941 tggctgtagc tgtttaggag gagagcagct ggctgtgtgg ctgccaggtg gctcttatgc
     3001 cctccctggc cactgcaatg tgtcagcacc tcccgaggac tcttcaggac agaatactgc
     3061 ctccccagag tggctctaag gaagccggag cctccaggtg accttcctgc taagttccca
     3121 gatagcggtg atgggcatcc acaccgcgcc acaggatgga ccacgtgagg gcaccacccc
     3181 ctcccttcat atgtcagagc ccccaagtgc ccaaaggcac gcaggccatc tggcctgtgt
     3241 cacacatgga gcaactagag actgtttcca ctgggtccac agagagggtg ggatgaagcc
     3301 agccaccgag tggtttacaa aaccagccac gtacgtgcct ctcaacagtg tgcgctcgac
     3361 acacccgccc tactgatcta cgacttggtc agtaggtcag atggaagggg attccgtgta
     3421 ctcccagatc acgccctttt ctctatgcct tggggtggct ctgctgcccc ctggtcactc
     3481 tagcatgtcc agctggacat caagcctccc tcatcctccc ctcctgctca tgtacctgtg
     3541 aaacctgctc gtatcccgtg ccagtactga cagaaatccc agtgggccca tcgttaggaa
     3601 gccagatggg ctcctgggtc cagttggccc aggcatgtga attatcagac attctacaaa
     3661 gacagacgtt gccttaccct accgcttaca gtgaaactcc tatgtgggtt gtgcctctcc
     3721 actggtcagt gtatgcttgg tgccttgtct ctatgaactc aataataaag gactttacca
     3781 cggaaaaaaa aaaaaaaaaa aaaaaaaaa
//
