LOCUS       NM_001109130            2590 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus translin-associated factor X interacting protein
            1 (Tsnaxip1), mRNA.
ACCESSION   NM_001109130 XM_001073505 XM_001073538 XM_574231
VERSION     NM_001109130.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP
            and Kingston RE.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Bray JD, Chennathukuzhi VM and Hecht NB.
  TITLE     Identification and characterization of cDNAs encoding four novel
            proteins that interact with translin associated factor-X
  JOURNAL   Genomics 79 (6), 799-808 (2002)
   PUBMED   12036294
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473972.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001073538.1, XM_001073505.1, XM_574231.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..2590
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /note="translin-associated factor X interacting protein 1"
                     /db_xref="GeneID:498944"
                     /db_xref="RGD:1565341"
     exon            1..122
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..2196
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /note="translin-associated factor X (Tsnax) interacting
                     protein 1"
                     /codon_start=1
                     /product="translin-associated factor X-interacting protein
                     1"
                     /protein_id="NP_001102600.1"
                     /db_xref="GeneID:498944"
                     /db_xref="RGD:1565341"
                     /translation="MANPQTRNQSFSKLRTRTQSSGGTPEAESIEKRKLSQKRRTLPL
                     QLSMCGHLSPWPTYTSGQTILHKRKPCSDDSRNRANSWQQQPLSISKPRYLEQLENYL
                     RKELLLLDLSTDSAQELRLQPYREIFEFFIEDFKTYKPLLSSIKNAYEVMLAHQREKI
                     RSLEPLKAKIVTVNEDCSERVLAMRAEERHEISVLKKEKMNLLKLIDKKNEEKISLQC
                     EVAKLRKSLAEEYLRYLTERDARKILIGDLNELRYQREDMSLAQSPGVWGEDPVKLTL
                     ALKMTRQDLTRTQMELNTMKANFGDVVPRRDFEMQEKTNMELQEQLESLRGDYEEVRK
                     EHEMLLQLHMSTLKERDQFYNELQEIQRTSTPRPDWTKCESVIAGGQERWLVLAEGKN
                     SDQLVDVLLEEIGMGLLREKDFFPGLGFGDSIPPFLRFDGPVKNKKPSKKEVVNLLKD
                     AWKERVAEEQKESFPDFFFNFLERRFGVNEAMAWAYTIFENIKLFRSSEIMSQFYAVL
                     MGKTLESVYINQKDTLFHLLKELINADTQNEGSITMEQFSTVLKTTFPLKKEEQIMEL
                     MEAAGWGPDSSNTDMLNYRSLFTEDEEGQSEPFVQKLWEQYNSEKEAYLEELKQELNM
                     EPLEEVTLLKMRGTLMNIDPTMDRQTLSAYLSQAYQIPAIDVPLDDEERQGIISVTLE
                     TALDRLKMADTKRVGPREPEQAS"
     exon            123..204
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            205..317
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            318..444
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            445..538
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            539..735
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            736..871
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            872..1041
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            1042..1201
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            1202..1332
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            1333..1458
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            1459..1611
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            1612..1721
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            1722..1848
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            1849..1955
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
     exon            1956..2590
                     /gene="Tsnaxip1"
                     /gene_synonym="RGD1565341"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggccgctgg gggctggtcc ccatggcaac ggactgtaca ctaccgcaac ggctctagcc
       61 tgcttctgct ccagagtcat ggccaacccc cagacgcgta accagagttt ctccaagcta
      121 agaacacgca cacaatcttc aggagggact ccggaagcag agagcattga gaaacgcaag
      181 ctttcccaga agcgaaggac actgcccttg cagttatcca tgtgtggcca cctgtcacca
      241 tggcctacat acaccagtgg ccagacgatt ctacataaac gaaagccctg ttcagatgac
      301 agccggaatc gagccaatag ctggcagcag cagcccctga gcatctccaa gcccaggtac
      361 ctggagcaac tagagaatta cctgcgcaag gaactcctgc tgctggacct gagcacggat
      421 tctgcacaag aactgaggct gcagccttat agggagatct ttgagttctt catagaggat
      481 ttcaagacat acaagccatt gttatcctcc atcaagaatg cgtatgaggt gatgctggcc
      541 caccaaagag agaaaatccg gtccctagag cccctgaagg ccaagattgt cactgtgaac
      601 gaggactgca gtgagagagt tctggccatg agggctgagg agaggcatga aatctctgtg
      661 ctcaagaaag agaagatgaa tttgctaaaa ctcattgata aaaagaatga agagaagatc
      721 tcactgcagt gtgaggtggc taaactgagg aagagcctgg ctgaggagta cttgcgttac
      781 cttaccgaac gagatgcccg aaagattctc atcggggacc tgaatgaact gaggtaccag
      841 cgagaagaca tgtcactagc ccagagccca ggcgtttggg gagaagaccc tgtgaagcta
      901 actctggcac tgaagatgac tcgacaagac ctgactcgca cgcagatgga acttaacaca
      961 atgaaagcca actttggaga tgtggtgccc aggagagact tcgaaatgca agagaagacc
     1021 aacatggagc ttcaagagca gctagaaagc ctgagaggcg actatgaaga agtccggaag
     1081 gagcatgaga tgctgctgca gttgcacatg agcacactaa aggagcggga ccagttctat
     1141 aatgagctgc aggagatcca gcgcacctct acaccgcggc ctgactggac caaatgcgaa
     1201 agtgtcatag cagggggcca ggaacgctgg ctagtgctgg ctgaagggaa gaacagtgac
     1261 cagctggtgg atgtgctcct ggaggaaatt ggcatgggtc tgcttcggga gaaggacttc
     1321 ttccctggcc tgggctttgg ggattccatc cctccattcc ttcggtttga tggccctgtg
     1381 aagaacaaga agcccagcaa aaaggaggtg gtaaatctcc ttaaggatgc ctggaaggag
     1441 cgtgttgcag aggagcagaa agagtcattt ccagatttct tcttcaattt tctggagcgt
     1501 cgctttgggg tcaatgaagc catggcctgg gcttatacca tttttgaaaa tatcaagctc
     1561 tttcgttcca gtgagatcat gagtcagttc tatgcagttt tgatgggaaa gactttggag
     1621 agtgtatata tcaaccaaaa agacacactg ttccacctgc tgaaggagct gataaatgct
     1681 gacactcaga atgaggggtc aataaccatg gaacaattca gcaccgtcct caaaactacc
     1741 tttcctctca agaaggaaga gcagattatg gagttgatgg aggcagcagg ctggggtcca
     1801 gacagcagca acacagacat gttaaactat cgatcattgt ttactgagga tgaggaaggc
     1861 cagagtgagc catttgtgca aaagctgtgg gaacagtata acagtgagaa ggaagcttac
     1921 ttagaagaac tgaagcagga gctaaacatg gaacctcttg aagaggtgac cctactgaag
     1981 atgcgtggga cactgatgaa cattgatccc accatggaca ggcagactct gagtgcctac
     2041 ctgagccagg cctatcagat ccctgcaatt gatgttccac tggatgatga agagaggcag
     2101 gggataattt ccgtaacgct tgagactgca cttgatcgac ttaagatggc agacacgaag
     2161 cgtgtaggac ctcgagagcc agagcaagca agctagagcc tccaaaggca acagaaatac
     2221 tccaatgttg ctaaccttct tctagtataa aattctttat ttaaattcat actatttttc
     2281 aggctggggg aaggtgatct gggcaggccc taagacatgc actaaaaagc agaacaacta
     2341 ggggttgggg atttagctca gtggtagagc gcttgccctg ggttcggtcc ccagctccga
     2401 gaaaaaaaaa aaaaaaaaag aaccaaaaaa aaaaaaaaag cagaacgact catttgtgag
     2461 agtttattgg tgctaggaga tgaggaacct tgacaattgt ttagatgccc aaggtaggga
     2521 gagtaggtgc cagctaaggc ctggtcctac tgtgcaggaa agacagaatt gcctctgaat
     2581 gcacagggga
//
