LOCUS       NM_001400632            5681 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus teashirt zinc finger homeobox 1 (Tshz1), mRNA.
ACCESSION   NM_001400632 XM_039097340
VERSION     NM_001400632.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5681)
  AUTHORS   Core,N., Caubit,X., Metchat,A., Boned,A., Djabali,M. and Fasano,L.
  TITLE     Tshz1 is required for axial skeleton, soft palate and middle ear
            development in mice
  JOURNAL   Dev Biol 308 (2), 407-420 (2007)
   PUBMED   17586487
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Jan 26, 2022 this sequence version replaced XM_039097340.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.54853.1,
                                           SRR26643288.60322.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840108, SAMN12840120
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1092              JAXUCZ010000018.1  79726571-79727662   c
            1093-5681           JAXUCZ010000018.1  79651256-79655844   c
FEATURES             Location/Qualifiers
     source          1..5681
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.3"
     gene            1..5681
                     /gene="Tshz1"
                     /gene_synonym="Sdccag33"
                     /note="teashirt zinc finger homeobox 1"
                     /db_xref="GeneID:307217"
                     /db_xref="RGD:1311684"
     exon            1..1092
                     /gene="Tshz1"
                     /gene_synonym="Sdccag33"
                     /inference="alignment:Splign:2.1.0"
     CDS             1053..4304
                     /gene="Tshz1"
                     /gene_synonym="Sdccag33"
                     /note="serologically defined colon cancer antigen 33;
                     teashirt zinc finger family member 1"
                     /codon_start=1
                     /product="teashirt homolog 1"
                     /protein_id="NP_001387561.1"
                     /db_xref="GeneID:307217"
                     /db_xref="RGD:1311684"
                     /translation="MPRRKQQAPRRSAAYVPEEELKAAEIDEEHVEDGGLSLDIQESE
                     FVCNEETEIKEAQSYQNSPVSTATNQDAGYGSPFSEGSDQLAHFKSSTSREEKEEPQC
                     PDSVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSSSTTSNNDASQKESSTPTPTP
                     PTSTASTACTTATTAITSCSTSTSHSSTTSNNSSSGYDWHQAALAKTLQQTSSYGLLP
                     EPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNR
                     DKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK
                     VPLKEPVPAITKLVPSTKKRALQDLASPCSPEPTGMATDVALSESAKDQKTANPYVTP
                     NNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASK
                     KGKQLVLDPVVEEKIQSIPLPPTTHTRLPASSIKKQPDSPAGSVASEEKKEPEKEKEK
                     EKAPPTAGDTERKIKEETEDATEKFEPTALYQYLREEDLDDSPKGGVDILKSLENTVS
                     TAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLQSAVQSVQIQPSYASSVKSLSSTEHN
                     ALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVSVKKEERPTEKEKASPVKAISPVAKE
                     NKDLPKSEETGSKPQKKGSDLETGKAKKESTVDAHTPNGTEPLKAKVTNGCSNLGIIT
                     DHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPVYPTTPA
                     KQADAIDRYYYENSDQPIDLTKSKNKPLVSGVADAVSSPLRESALMDISDMVKNLTGR
                     LTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSL
                     RETAEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTG
                     HPVFFCNDCASQFRTASTYISHLETHLGFSLKDLSKLPLSQIQEQQSVSKALANKTLG
                     PLGSSEEDLGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLIYVTELEKQ"
     exon            1093..5681
                     /gene="Tshz1"
                     /gene_synonym="Sdccag33"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgagact gtctgaaagc tctgcgatcc gaatgtgtgt tatatttcac tgaaaagagg
       61 agagagggag agcgcatctc ctctctccca ggagtttggg ggggggacag tacacgctca
      121 tctcgcccac ccagtgaatg tccgttcttc accccctcgg tgcacactct cccggttgtt
      181 gttggcttat tttttggagg gtgtgtgtgg cttttttgtg tgtgtttttc gaattttttt
      241 ttctgttgga agatcaagac cggccaaaaa tccacgatca aaatgtgttt gcattagatt
      301 tctcctcgga agaagcggcg atcctggcgg ccaggccccc cgggggcagc gcggggcacg
      361 aagtggcgct ccggcgggtg acactgtttg atctgtgact gtttggaagg tggagcggcg
      421 ctgacatctc ccccggcgca tgtatgtaca ggggcttcac tcctgtcttg tttgctttct
      481 tcctcctaga ctaagtgcgg ggaggaaagg acagccggtc ggcctcgctg gcgcacaatg
      541 agagagctgc gacccgcgca ctaacagcgc ccgccgcgac ccccaccgcc agcagagagg
      601 ggccgagaaa gttgcgcgcg gagactcgcg gctcgcccag gaaggcgcgg gagcgcccgg
      661 cggcgcccgg acagcgcccg cccagcacag cgccagcggc atggagcgcg ggccgcgggc
      721 cggccttccg agcgcccgcc gctgcgcccg cggcccgcgc cggggatgac tccgggctcg
      781 gcgcccaggc cccgcgcgct ccgcccgcag cccggcggcc cgggagcggc ccgtgcggcc
      841 gccgccgccg ccagctgagc ggcccgggcg cggcggtcca tgcgagcggc gcccgccatc
      901 cgcggcgcgc ccggagcccg gagcccgcgg ggacgaggcc aaagttgggc gcgccgcgga
      961 gttgtgcccg cgcccgggcc ccgcgtcccg gctccccgcg ccccgcgaac tccggcggcg
     1021 gctgaggcga cggctgcggc ggcccgagca gcatgccgag gaggaagcag caggcccccc
     1081 ggcgctcggc agcttatgtt cccgaggaag aactgaaggc cgccgaaata gatgaggagc
     1141 acgtggagga tggcgggctg tctctggaca ttcaggagag cgaattcgtg tgcaatgagg
     1201 agacagagat caaagaagcc cagagctatc agaattcccc cgtcagcact gccaccaatc
     1261 aagatgctgg ctacggatca ccctttagcg agggcagtga ccagctggcc catttcaaaa
     1321 gctccacctc cagagaggag aaggaggagc cgcagtgtcc agacagtgtc tcctaccccc
     1381 aggacagctt ggcacaaatc aaagccgtgt atgcgaactt attctcagag tcctgctggt
     1441 ctagcctagc attggattta aagaagtcca gttctaccac cagcaacaac gatgccagcc
     1501 agaaggagag ttccacacct acccccacac cccctaccag taccgccagt accgcctgca
     1561 ccacggctac cacagccatt accagctgca gcaccagcac cagccatagc agcaccacca
     1621 gtaacaacag cagctcgggg tatgactggc accaggctgc cctggccaag acgctgcagc
     1681 agacgtcgtc ctacgggctg ctgcctgagc ccagcctgtt tagcaccgtg cagctctacc
     1741 ggcagaataa caagctgtac ggctccgtgt tcacaggggc cagcaagttc aggtgcaaag
     1801 actgcagcgc ggcgtatgac acgttggtgg aactgacggt gcacatgaac gagacaggcc
     1861 actaccgtga tgacaacaga gacaaggact ctgagaagac caagcgctgg tccaagccca
     1921 ggaagcgttc cctaatggag atggagggga aagaggacgc acagaaggtg ctgaagtgta
     1981 tgtactgcgg acactccttc gagtccttgc aagacctcag tgtccacatg attaaaacaa
     2041 agcattacca gaaagtgcct ctgaaggagc ccgtgccagc catcaccaaa ctggtccctt
     2101 ccaccaagaa gcgagcgctg caggacctgg catccccttg ctccccagag cccacgggca
     2161 tggccactga cgttgcactg agtgagtcgg ccaaggacca gaaaacggcc aacccgtacg
     2221 tgactccgaa caaccgttat ggctaccaga atggtgctag ttacacgtgg cagtttgagg
     2281 cccgaaaagc ccagatactc aagtgcatgg aatgtggcag ctcccatgac accttgcagc
     2341 agctcacggc ccacatgatg gtcaccggcc acttcttaaa ggtgacaacc tctgcctcca
     2401 agaaaggaaa gcagctggtg ttggaccctg tggtggaaga gaagatccag tccatccccc
     2461 tgcccccgac cactcacacc cggctgcctg cctctagcat caagaaacaa ccagactctc
     2521 ctgcaggctc tgtagcctca gaagagaaga aggagcctga gaaggagaaa gagaaggaga
     2581 aagcccctcc aactgctggg gacacagaga gaaaaatcaa agaggagact gaagacgcca
     2641 ctgagaagtt tgaacccaca gccctctatc agtacctgcg tgaggaagac ctagacgaca
     2701 gccccaaggg gggagtagat atcctaaagt cacttgagaa cactgtgtcc acggccatca
     2761 gtaaagccca gaatggtgcg ccctcatggg gtgggtaccc cagcatccac gcagcctatc
     2821 agctgccagg cacagtgaag ccactgcagt cagctgtgca gagtgtgcaa atacagccct
     2881 cttatgccag cagcgtgaag tcgctgtcct ccacagagca caatgccctc ctacactctc
     2941 cagggagcct cacgcccccg ccccataaga gcaatgtgtc tgccatggag gagttagtag
     3001 agaaggtcac cggcaaggtt agcgtcaaga aggaggagag gcccactgag aaggagaagg
     3061 cctccccggt caaagccatc tcccctgtgg caaaggagaa taaagatctc cctaagtcgg
     3121 aggagactgg gagcaagcca cagaagaagg gctccgattt ggaaactggg aaggccaaaa
     3181 aggaaagtac cgtggatgct cacaccccaa acggtacaga gcctcttaaa gccaaggtca
     3241 ccaatggctg cagcaacctg ggtattatca cggaccattc cccggagccc tcttttatca
     3301 acccgctaag cgccctgcag tccatcatga acacccacct aggtaaggtg tccaagcctg
     3361 tgagcccctc tctggaccca ctagcgatgc tctataagat cagcaacagc atgctggaca
     3421 agcctgtcta ccccacgacc cccgctaagc aggccgacgc catcgaccgc tactactacg
     3481 agaacagcga ccagcccatc gatctgacca agtccaagaa caagccactg gtctcaggcg
     3541 tggcggatgc cgtgtcttcg cctctgcggg agagtgccct catggatatc tcggacatgg
     3601 tgaagaacct cacgggccgt ctgactccca agtcctccac accctccacg gtgtccgaga
     3661 agtcagatgc agatggcagc agctttgagg aggccctgga cgagctgtca cctgtccaca
     3721 agagaaaggg gcgccagtcc aactggaacc cacaacacct cctcatcctc caggcccagt
     3781 ttgcctccag cctccgagag acggcggaag ggaaatacat catgtcggac ctgggccctc
     3841 aggagcgggt gcacatctcc aagttcacag gcctctccat gaccaccatc agtcactggc
     3901 tggccaacgt caagtaccag ctacggagga cagggggaac caagttcctt aagaacctcg
     3961 acacagggca tcctgttttc ttttgtaacg attgtgcctc tcagttcaga actgcctcca
     4021 cgtacatcag ccacctggag acgcacctcg gcttcagcct gaaggacctc tccaagctgc
     4081 cactcagtca gatccaagag cagcagagcg tctccaaagc cctcgccaac aagactctgg
     4141 gcccactggg gtcctccgag gaagacctgg gctccacatt ccagtgcaag ctctgtaacc
     4201 ggacttttgc gagcaagcac gcagtaaaac tgcacctcag taagacccac ggcaagtcgc
     4261 cggaggacca cctgatctac gtgacagagc tggagaagca atagtgtgca ggggtgcagg
     4321 tggttgcaga ggactgagct ccctcttgtg ctgcactagg cctggcctga gcctctgaaa
     4381 tcagtctctc ctttgtcgct gacctgccta tctggacttg gtttttctca cacatatttt
     4441 gtagttatat ttatatgctc tttgtctggt ctgtgcatgt tatttttctt tttctccgtg
     4501 agtcaaagtc tgaccttcat cttcagcatc tgttcttgtt gagctatctt ttgtaggaaa
     4561 tagtgggggc acgcttggag acattgttta gcagtaaaga aacagataca aacagcagcg
     4621 ataaagagac atcctaaaat taagaagttg ccatgacaat aaaggtcacg ggacctggta
     4681 gtatcaagtt taaccctttg aggactttat ctctgtgcct ttcactcaaa aattaaacaa
     4741 aaaaaaagtt taagaaaaaa aagagaaaga aagaaggggg aaaggcgctt aaaggcattt
     4801 cattcagatc aaaagctgtg tcagacacaa aacttattta ataattaaaa aatgagcttt
     4861 tatgacaaga catgcatgca gcggttggag acagaaagct gtctaggact cacggggtta
     4921 ggaagccaca actttatatg ttcaaaacaa aaacaaggaa caccccagtc gccactatgc
     4981 ccaaaccctc tggatgctga aaaatgccac ttttggcaaa aaaaaaaaag tatgcaagct
     5041 tattatttaa aaaaaatgtg taaaaatgct atttcttttt tttttctgta aaatactgca
     5101 gtttatagtt atttacaaat gtaagctttg gtatcagctg acctttctat agcgtgatgc
     5161 attggtaaat gaaaaaaaaa acacagaaaa aaaaaccaaa aaaaaaaaaa aagaaagaaa
     5221 aaaaaggggg gcaaatattg gatcctttcc ttgtaaaccg ccagcctcag cttacacacg
     5281 cctgtatgtt acatatcata tcattttaat ctaccccact ttctttgtac cttctggctg
     5341 tatgctttct cttttaactt tttatattgt cattttatat taaatttctg tgtatataat
     5401 gtaaaaccac aatttttgga taaaatttag ttcctgcagc ttgatttaaa tagagaaaat
     5461 tttacctgca cctgcgtctt ctcagatgca tgtactcaga ggaactatca gacaaaagta
     5521 aataaataaa attaaaaaaa aaaaccagag caagcagtgc actgttaatt atacattctg
     5581 atgtcccgtc attaatattg tacagtccat tttggttcac acaattaaac ccactgtttt
     5641 ctcaaatgta aaataaaccc acacgcagtt cttgatttac a
//
