LOCUS       NM_001270737            1698 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus testis specific 10 interacting protein
            (Tsga10ip), transcript variant 3, mRNA.
ACCESSION   NM_001270737
VERSION     NM_001270737.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1 and BC097254.1.
            
            Transcript Variant: This variant (3) uses an alternate in-frame
            splice junction at the 5' end of an exon compared to variant 1. The
            resulting isoform (3) has the same N- and C-termini but is shorter
            compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097254.1, SRR26360186.2764519.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-19                JAXUCZ010000001.1  212143964-212143982 c
            20-1698             BC097254.1         1-1679
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1698
                     /gene="Tsga10ip"
                     /note="testis specific 10 interacting protein"
                     /db_xref="GeneID:361707"
                     /db_xref="RGD:1302964"
     exon            1..167
                     /gene="Tsga10ip"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..1649
                     /gene="Tsga10ip"
                     /note="isoform 3 is encoded by transcript variant 3;
                     fibrous sheath protein; testis-specific protein
                     10-interacting protein; tsga10-interacting protein"
                     /codon_start=1
                     /product="testis-specific protein 10-interacting protein
                     isoform 3"
                     /protein_id="NP_001257666.1"
                     /db_xref="GeneID:361707"
                     /db_xref="RGD:1302964"
                     /translation="MLNTDQLLVRAISERPRKSTEPLVPGTPTGLFSLLSNISPEEQG
                     RLGSGDSLQSQSCQQQRSYSAGQTTKKERKPRRRNKKGRGSAEAEDLFSSPRKPSFPF
                     QWAWESFIIDGQALLQSGSSVAVGHRSLLFPPAAPQCKTRHKSVANLSEDLRACHKSE
                     VQNLGRRYQPGAWANLSLPLGKAESQGLERPTFWSTGKGSGSECEDVSEVEGQNADEA
                     EKSLSTGELPQLPGQGLTLEEELISEVMEEEEHNRRKGSSVNKGRNSGEKGSEEGELQ
                     SHNQGSSSNSNSLRKSPKGTSGAKEFKGPWDLERLHRQLQEELESGPQKQTWKALRAA
                     VQASARNRKTPVTGEEESFLTANFPNRTFHKRQEATRNLLQAWEQQQLKEKQQAEMRR
                     AREQQVQQQVARCLAAYTPGGNRGTLGPQRKLEELRRKERQRFAEYQAELQGIQHRVQ
                     ARPFLFQQAMQTNARLTANRRFSQVLSALGVDEEQLLAEAGNAEGIPRKHRSYRSFGV
                     EMESSPQSPPKTEPTSSQPGRHPSPTLD"
     exon            168..307
                     /gene="Tsga10ip"
                     /inference="alignment:Splign:2.1.0"
     exon            308..1002
                     /gene="Tsga10ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1150
                     /gene="Tsga10ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1151..1321
                     /gene="Tsga10ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1322..1421
                     /gene="Tsga10ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1422..1540
                     /gene="Tsga10ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1541..1676
                     /gene="Tsga10ip"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agctggcagg taggggtggg agaggacaac atgccaatat gctgaacact gaccaactgt
       61 tggttagggc catatcggag agaccaagga agagcacaga gcccttggtt ccagggacac
      121 ctacaggact gttcagcctt ctatcaaaca tctctccgga ggagcagggc cgccttggga
      181 gcggagacag tctccagagt cagagctgcc agcagcaaag gtcttacagc gcagggcaga
      241 caacaaagaa agaacgaaaa ccccggaggc gcaacaagaa aggacgtggc tcagctgagg
      301 cagaggatct cttcagttca cctcggaagc cttccttccc tttccagtgg gcctgggaga
      361 gcttcatcat agatggccag gctctgcttc agtcaggctc ctctgtggcc gtgggccatc
      421 gatccttgct cttccctcca gcagcccccc agtgcaagac caggcacaag tcagtagcca
      481 acctctcaga agaccttcga gcctgccaca agtcggaagt gcaaaacctg ggaaggagat
      541 atcagcctgg ggcctgggcc aacctttccc tgcctctggg caaggctgag agccaagggc
      601 tagagcgacc caccttctgg tcaacaggga aagggtcagg gtcagagtgt gaggatgtct
      661 cagaggtaga aggccagaat gctgacgagg ctgagaaaag tctcagcact ggggaactgc
      721 cccagctccc agggcaaggt ttgaccttgg aggaggagtt gatctcagag gtgatggagg
      781 aggaggaaca caacaggaga aagggcagtt ctgtcaacaa ggggaggaat tctggagaga
      841 agggctcaga agaaggggag ctgcagagcc acaaccaggg aagcagctct aactccaaca
      901 gcctccgaaa gtcaccaaag gggacctcag gggccaagga attcaagggg ccctgggacc
      961 tggagcggct ccacaggcag ttacaggagg aattggaaag tggtccccag aagcagacct
     1021 ggaaggcgtt gcgggcagct gtccaggcct ctgccagaaa caggaagacc cccgtcacgg
     1081 gagaagagga aagtttcttg actgccaact tccctaatcg taccttccat aaacgacagg
     1141 aggccaccag aaacctgctg caggcctggg aacagcagca gctgaaggag aagcagcagg
     1201 cggagatgcg cagggctcgg gagcagcaag tgcagcagca ggtggcccgg tgtctggcgg
     1261 cctacacgcc aggagggaac agagggaccc tgggtcctca gcgcaaacta gaggagctga
     1321 ggcgcaagga gcgacagcgt tttgccgagt accaagcaga gctccagggc atccagcata
     1381 gagtgcaggc ccggcccttc ctgttccagc aggccatgca gaccaatgcc aggctcacag
     1441 caaaccggcg cttctcccag gtgctgtcag cattgggagt ggatgaggaa cagctgctgg
     1501 ctgaggcagg caatgcagag ggcatccccc ggaaacacag gagctaccgg tcatttggag
     1561 tagaaatgga gtcctctcct cagagtcccc caaagacaga gccaaccagc agccagcctg
     1621 gaagacaccc ttccccaacc ctggactgag agaaaaatta aatgctttat ggccaaaaaa
     1681 aaaaaaaaaa aaaaaaaa
//
