LOCUS       XM_039086876            2230 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tRNA splicing endonuclease subunit 54
            (Tsen54), transcript variant X4, mRNA.
ACCESSION   XM_039086876
VERSION     XM_039086876.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039086876.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2230
                     /gene="Tsen54"
                     /note="tRNA splicing endonuclease subunit 54; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     41 samples with support for all annotated introns"
                     /db_xref="GeneID:690308"
                     /db_xref="RGD:1597379"
     CDS             298..1887
                     /gene="Tsen54"
                     /codon_start=1
                     /product="tRNA-splicing endonuclease subunit Sen54 isoform
                     X4"
                     /protein_id="XP_038942804.1"
                     /db_xref="GeneID:690308"
                     /db_xref="RGD:1597379"
                     /translation="MSRRGPQPRRGAFGGWGGDSAPVASELRAARSRSQKLPQRSHGP
                     KDFLPDGSEAQAERLRLCRQELWQLLAEERVERLGSLVAAEWRPEEGFVELTSPAGKF
                     WQTMGYSEEGRQRLHPEEALYLLECGSIQLFYQDLPLSIQEAYQLLLTEDTLSFLQYQ
                     VFSHLKRLGYVVRRFQLSSVVSPYERQLNLDGYAQCLEDGSGKRKRSSSCRSVNKKAK
                     ALQNSLPPVSLADSSPPACDQSSPYPEEKPRDSSPEQGSELPMQFLGSPEPCPDPGRE
                     DAGCDQESDKIENGAKGTPKPRWNFERISFPNMASDSRHTLLPAPAPELLPVNVIGRG
                     TDAESWCQKLNQRREKLSRRDREQQAEVRQFREDVNADPEVQGCSTWQEYKELLRRRQ
                     MQRSQPRPPHLWGQSVTPLLNPDTADSPAAVLQRISVLQTTHLADGGYRLLEKSGGLE
                     ISFDVYQADAVATFRKNSPGKPYVRMCISGFDEPVPDLCSLKRLTYQSGDVPLIFALV
                     DHGDISFYSFRDFTLPQDLGH"
ORIGIN      
        1 cgtgagagtg gagggggcgg gatgtggatg aggcttcgtg ctgctgtgtc ctgtctgggg
       61 atctggagag ctgggctctg gtctagaccg aaagatgagg tgtgaatgta taggagagaa
      121 aataggatgt tttggaagtt gaacctgagg acccccccca ctaggggcgg ggatcacttc
      181 ctctttgccc catcctttcc cgggttgccc gcagcgacct tcgtccaagc tcggagactc
      241 atagctgctg gctggagcaa cggtgccacc tagtggtgag cgtcagagcg acccacgatg
      301 tcacggcggg gaccccagcc tcgaagaggt gctttcggag gctggggtgg cgattcagca
      361 ccagtcgcct cggagctccg cgccgcgcgc tcgcggtccc agaagctgcc tcagcggtcg
      421 catggcccca aggacttcct cccggacggc tcggaggctc aggcggagag gctgcgcctg
      481 tgtcgccagg agttgtggca gctgctggcg gaggagcgcg tggagcgcct gggcagcttg
      541 gtggccgcgg agtggagacc agaagaaggc tttgtggagt tgacatctcc tgcggggaaa
      601 ttctggcaga ccatgggcta ctcagaggag ggacggcagc ggcttcaccc cgaagaggcc
      661 ttgtatctgc tggagtgtgg ctcgattcag ctcttctacc aagacctacc actgtctatc
      721 caagaggcct accagctgct gctgaccgag gacaccttga gtttcctgca atatcaggtc
      781 ttcagccacc tgaagagact gggctacgtg gtccgccggt tccagctaag ctcagtcgtg
      841 tcaccttacg agcggcagct caacctggat ggctatgccc agtgcctgga ggatgggtct
      901 ggcaagagga agaggagttc tagctgtcgg tctgttaata agaaggccaa ggccctgcag
      961 aactccctgc cgcccgtcag cttggcagac tccagcccac ctgcctgtga ccagagtagc
     1021 ccatacccag aggagaaacc tcgggactca agccctgagc agggctcgga gctccccatg
     1081 cagtttctgg ggtccccaga gccttgccct gatccgggca gggaagatgc ggggtgtgac
     1141 caggagagtg acaaaataga gaatggagcc aaggggaccc ctaagccacg ctggaacttt
     1201 gagcggatct cattccccaa catggcctca gatagtcggc acacgctcct gcctgcccca
     1261 gccccagagc tgctccctgt caatgtcatt gggcgaggga cagatgctga gtcctggtgc
     1321 caaaagctga accagcggag ggagaagctc tcccggcgag accgggagca gcaagcagag
     1381 gtccggcagt tccgggagga tgttaacgcc gatcccgagg tgcagggctg ctccacttgg
     1441 caggagtaca aggagctgct gaggagacga cagatgcaaa ggagccagcc ccgacctcca
     1501 cacctatggg gccagtctgt tacccccttg ctgaaccccg atacagccga ttctccagcc
     1561 gccgtcctgc aacgtatctc tgtactgcag acaacgcacc ttgctgatgg aggttaccgg
     1621 ctgctggaga agtctggggg cttggagatc agcttcgatg tttaccaggc tgacgctgtg
     1681 gctacgttcc ggaaaaacag ccctggcaaa ccctacgtgc gaatgtgcat tagtgggttt
     1741 gatgaacctg tcccagacct ctgcagcctc aagcggttga cctaccagag tggggatgtt
     1801 cccctgatct ttgctctggt ggatcatggt gacatttcct tctacagctt cagagacttc
     1861 acactgcccc aggatctggg gcactgaaca cagctctggg aatggctttc tccggggtgg
     1921 ggcctggact gctctcaggg accgtgtcgg ctgtctctca tacaggactc acctggacct
     1981 ggccactggg atctatggtc ctaggtgtct tctgtttgta gggaagaaga gcacgccctc
     2041 ttgcctggtt attgtgcttt caagcccact gcctggaagt gctacctggc agtgaccgcc
     2101 ccttggaact caggagttgt tttcagaggc ccaggagttg gggtagaaga ggagactctg
     2161 tgcctttatt caagggggtg cctgcttcgt gccataaagc caaagccatt aaaaaaaata
     2221 ttttctgctg
//
