LOCUS       NM_001109576            1979 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus tRNA splicing endonuclease subunit 54 (Tsen54),
            mRNA.
ACCESSION   NM_001109576 XM_001074043
VERSION     NM_001109576.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Yoshihisa T.
  TITLE     Handling tRNA introns, archaeal way and eukaryotic way
  JOURNAL   Front Genet 5, 213 (2014)
   PUBMED   25071838
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Weitzer S and Martinez J.
  TITLE     The human RNA kinase hClp1 is active on 3' transfer RNA exons and
            short interfering RNAs
  JOURNAL   Nature 447 (7141), 222-226 (2007)
   PUBMED   17495927
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On Oct 4, 2007 this sequence version replaced XM_001074043.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..1979
                     /gene="Tsen54"
                     /note="tRNA splicing endonuclease subunit 54"
                     /db_xref="GeneID:690308"
                     /db_xref="RGD:1597379"
     exon            1..115
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..1637
                     /gene="Tsen54"
                     /note="tRNA splicing endonuclease 54 homolog; TSEN54 tRNA
                     splicing endonuclease subunit"
                     /codon_start=1
                     /product="tRNA-splicing endonuclease subunit Sen54"
                     /protein_id="NP_001103046.1"
                     /db_xref="GeneID:690308"
                     /db_xref="RGD:1597379"
                     /translation="MEPESEPASVEVPAGRVLSASELRAARSRSQKLPQRSHGPKDFL
                     PDGSEAQAERLRLCRQELWQLLAEERVERLGSLVAAEWRPEEGFVELTSPAGKFWQTM
                     GYSEEGRQRLHPEEALYLLECGSIQLFYQDLPLSIQEAYQLLLTEDTLSFLQYQVFSH
                     LKRLGYVVRRFQLSSVVSPYERQLNLDGYAQCLEDGSGKRKRSSSCRSVNKKAKALQN
                     SLPPVSLADSSPPACDQSSPYPEEKPRDSSPEQGSELPMQFLGSPEPCPDPGREDAGC
                     DQESDKIENGAKGTPKPRWNFERISFPNMASDSRHTLLPAPAPELLPVNVIGRGTDAE
                     SWCQKLNQRREKLSRRDREQQAEVRQFREDVNADPEVQGCSTWQEYKELLRRRQMQRS
                     QPRPPHLWGQSVTPLLNPDTADSPAAVLQRISVLQTTHLADGGYRLLEKSGGLEISFD
                     VYQADAVATFRKNSPGKPYVRMCISGFDEPVPDLCSLKRLTYQSGDVPLIFALVDHGD
                     ISFYSFRDFTLPQDLGH"
     exon            116..280
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     exon            281..344
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     exon            345..428
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     exon            429..527
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     exon            528..580
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     exon            581..679
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     exon            680..1308
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     exon            1309..1369
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..1486
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
     exon            1487..1979
                     /gene="Tsen54"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagtgccgg gggtgggcgg ggcttttgcg gtgcgcgcgc agccgcagac ggcggccaga
       61 tggagcccga gtccgaaccc gcgtctgtgg aggttcccgc gggacgtgtg ctcagcgcct
      121 cggagctccg cgccgcgcgc tcgcggtccc agaagctgcc tcagcggtcg catggcccca
      181 aggacttcct cccggacggc tcggaggctc aggcggagag gctgcgcctg tgtcgccagg
      241 agttgtggca gctgctggcg gaggagcgcg tggagcgcct gggcagcttg gtggccgcgg
      301 agtggagacc agaagaaggc tttgtggagt tgacatctcc tgcggggaaa ttctggcaga
      361 ccatgggcta ctcagaggag ggacggcagc ggcttcaccc cgaagaggcc ttgtatctgc
      421 tggagtgtgg ctcgattcag ctcttctacc aagacctacc actgtctatc caagaggcct
      481 accagctgct gctgaccgag gacaccttga gtttcctgca atatcaggtc ttcagccacc
      541 tgaagagact gggctacgtg gtccgccggt tccagctaag ctcagtcgtg tcaccttacg
      601 agcggcagct caacctggat ggctatgccc agtgcctgga ggatgggtct ggcaagagga
      661 agaggagttc tagctgtcgg tctgttaata agaaggccaa ggccctgcag aactccctgc
      721 cgcccgtcag cttggcagac tccagcccac ctgcctgtga ccagagtagc ccatacccag
      781 aggagaaacc tcgggactca agccctgagc agggctcgga gctccccatg cagtttctgg
      841 ggtccccaga gccttgccct gatccgggca gggaagatgc ggggtgtgac caggagagtg
      901 acaaaataga gaatggagcc aaggggaccc ctaagccacg ctggaacttt gagcggatct
      961 cattccccaa catggcctca gatagtcggc acacgctcct gcctgcccca gccccagagc
     1021 tgctccctgt caatgtcatt gggcgaggga cagatgctga gtcctggtgc caaaagctga
     1081 accagcggag ggagaagctc tcccggcgag accgggagca gcaagcagag gtccggcagt
     1141 tccgggagga tgttaacgcc gatcccgagg tgcagggctg ctccacttgg caggagtaca
     1201 aggagctgct gaggagacga cagatgcaaa ggagccagcc ccgacctcca cacctatggg
     1261 gccagtctgt tacccccttg ctgaaccccg atacagccga ttctccagcc gccgtcctgc
     1321 aacgtatctc tgtactgcag acaacgcacc ttgctgatgg aggttaccgg ctgctggaga
     1381 agtctggggg cttggagatc agcttcgatg tttaccaggc tgacgctgtg gctacgttcc
     1441 ggaaaaacag ccctggcaaa ccctacgtgc gaatgtgcat tagtgggttt gatgaacctg
     1501 tcccagacct ctgcagcctc aagcggttga cctaccagag tggggatgtt cccctgatct
     1561 ttgctctggt ggatcatggt gacatttcct tctacagctt cagagacttc acactgcccc
     1621 aggatctggg gcactgaaca cagctctggg aatggctttc tccggggtgg ggcctggact
     1681 gctctcaggg accgtgtcgg ctgtctctca tacaggactc acctggacct ggccactggg
     1741 atctatggtc ctaggtgtct tctgtttgta gggaagaaga gcacgccctc ttgcctggtt
     1801 attgtgcttt caagcccact gcctggaagt gctacctggc agtgaccgcc ccttggaact
     1861 caggagttgt tttcagaggc ccaggagttg gggtagaaga ggagactctg tgcctttatt
     1921 caagggggtg cctgcttcgt gccataaagc caaagccatt aaaaaaaata ttttctgct
//
