LOCUS       NM_001006968            1400 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus tRNA splicing endonuclease subunit 34 (Tsen34),
            transcript variant 2, mRNA.
ACCESSION   NM_001006968 XM_214801
VERSION     NM_001006968.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1400)
  AUTHORS   Yoshihisa,T.
  TITLE     Handling tRNA introns, archaeal way and eukaryotic way
  JOURNAL   Front Genet 5, 213 (2014)
   PUBMED   25071838
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1400)
  AUTHORS   Paushkin,S.V., Patel,M., Furia,B.S., Peltz,S.W. and Trotta,C.R.
  TITLE     Identification of a human endonuclease complex reveals a link
            between tRNA splicing and pre-mRNA 3' end formation
  JOURNAL   Cell 117 (3), 311-321 (2004)
   PUBMED   15109492
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Apr 25, 2023 this sequence version replaced NM_001006968.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083767.1, SRR26360186.1054476.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-145               JAXUCZ010000001.1  74439650-74439794   c
            146-392             JAXUCZ010000001.1  74438692-74438938   c
            393-642             JAXUCZ010000001.1  74438292-74438541   c
            643-900             JAXUCZ010000001.1  74437902-74438159   c
            901-1400            JAXUCZ010000001.1  74432687-74433186   c
FEATURES             Location/Qualifiers
     source          1..1400
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1400
                     /gene="Tsen34"
                     /gene_synonym="LENG5; SEN34; Tsen34l1"
                     /note="tRNA splicing endonuclease subunit 34"
                     /db_xref="GeneID:292534"
                     /db_xref="RGD:1359564"
     exon            1..145
                     /gene="Tsen34"
                     /gene_synonym="LENG5; SEN34; Tsen34l1"
                     /inference="alignment:Splign:2.1.0"
     exon            146..392
                     /gene="Tsen34"
                     /gene_synonym="LENG5; SEN34; Tsen34l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             150..1088
                     /gene="Tsen34"
                     /gene_synonym="LENG5; SEN34; Tsen34l1"
                     /EC_number="4.6.1.16"
                     /note="leukocyte receptor cluster (LRC) member 5; tRNA
                     splicing endonuclease 34 homolog; TSEN34 tRNA splicing
                     endonuclease subunit; tRNA splicing endonuclease subunit
                     34-like 1; tRNA-splicing endonuclease subunit Sen34-like"
                     /codon_start=1
                     /product="tRNA-splicing endonuclease subunit Sen34"
                     /protein_id="NP_001006969.1"
                     /db_xref="GeneID:292534"
                     /db_xref="RGD:1359564"
                     /translation="MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNS
                     RLGLPLLLLPEEARLLAEIGAVTLVSAPRPDPRNHGLALASFKRQQEQSFQDQSTLAA
                     EARETRRQELLEKIVEGQAAKKQKLEQDSGADEEGQEAGGSEATQGSETSDDGQASAE
                     QEGADSSSPQPGPSNGVTPLPRSALLIQLATARPRPVKAKPLDWRVQSKDWPHAGRPA
                     HELRYSIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQCWSAEDPIPLQDL
                     VSAGRLGTSVRKTLLLCSPQPDGKVVYTSLQWASLQ"
     exon            393..642
                     /gene="Tsen34"
                     /gene_synonym="LENG5; SEN34; Tsen34l1"
                     /inference="alignment:Splign:2.1.0"
     exon            643..900
                     /gene="Tsen34"
                     /gene_synonym="LENG5; SEN34; Tsen34l1"
                     /inference="alignment:Splign:2.1.0"
     exon            901..1400
                     /gene="Tsen34"
                     /gene_synonym="LENG5; SEN34; Tsen34l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agctccgcct taatcgggat ttggtgttgg ctaggtgttg acttattgcc tgtgcccagg
       61 gacagtacgg cagattgaag aggagccaca gcgtgcacag tgtgcgactg tggattcaat
      121 cgtaggcgtg aactccttaa attgggaaga tgctggtggt ggaggtcgct aatggccgct
      181 cgctggtatg gggagccgag gcggtgcagg cgctgcggga gcgcctggga gtcgggggac
      241 gcacggtggg cgccctgccc cgcgggcccc gccagaactc gcgcctgggc cttccgcttc
      301 tgctgctgcc tgaagaagcc cggctcctgg cggagatagg cgctgtgacc ttagtcagcg
      361 ccccgcgtcc ggatccccgc aaccatggct tggccctagc gtcgttcaaa cgccagcaag
      421 agcagagttt ccaggatcag agcactttgg cagcagaggc ccgggagacc cggcgtcagg
      481 agcttctgga gaagatcgta gaaggccagg ctgccaagaa gcagaagctg gaacaggatt
      541 ctggggcaga tgaagaaggc caagaagccg gtggaagtga agctacccaa ggaagtgaga
      601 ccagtgatga tggtcaggct tctgcggagc aggaaggagc agattcttca tccccccaac
      661 caggaccttc aaatggggtg actcccttgc ccagatcagc cctgcttatc cagctggcca
      721 ctgccaggcc tcggcctgta aaagctaagc ctctggactg gcgtgtgcag tccaaagact
      781 ggccccatgc tggccgtcct gctcatgagc ttcgctacag catctacaga gacctgtggg
      841 agagaggctt cttcctcagc gcagctggga agtttggtgg tgacttcctg gtctatcctg
      901 gtgatccgct gcgtttccat gctcactaca ttgctcagtg ctggtctgct gaggacccca
      961 tcccacttca ggacctggtc tctgcaggcc gcctgggaac cagtgtcaga aagactctgc
     1021 ttctctgctc ccctcagcct gatgggaagg tggtttatac ttccctgcag tgggccagcc
     1081 tgcagtgagc tggcgactga gggggatgtg gctgtgcgtg gcaagaaccc tcctcgatgg
     1141 tcaccccagc tcttctcctc atggaggctt gtgctctcct accctgcctg gttctgattc
     1201 caggattttg aacactacat cctttctgtt tgtttttgtt ttgttttgtt ttttcctgtt
     1261 ttaaggcaat tactgcctgt gttgctctgt attctgtttc caaactgaac ttgttgagaa
     1321 tggagactgt tttgtgtttg gcttctctgt ttcctatggg gcttaggtcc cagcagttct
     1381 caataaattt gttgaataag
//
