LOCUS       XM_008763242            1769 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tRNA splicing endonuclease subunit 2
            (Tsen2), transcript variant X3, mRNA.
ACCESSION   XM_008763242
VERSION     XM_008763242.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008763242.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008763242.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1769
                     /gene="Tsen2"
                     /gene_synonym="RGD1309946"
                     /note="tRNA splicing endonuclease subunit 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 9 ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 14 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:312649"
                     /db_xref="RGD:1309946"
     CDS             44..1435
                     /gene="Tsen2"
                     /gene_synonym="RGD1309946"
                     /codon_start=1
                     /product="tRNA-splicing endonuclease subunit Sen2 isoform
                     X1"
                     /protein_id="XP_008761464.1"
                     /db_xref="GeneID:312649"
                     /db_xref="RGD:1309946"
                     /translation="MAEAVFRAPKRKRRVYESYESPLPIPFSQDQSPRKEFRIFQAEM
                     ISNNVVVRGTEDMEQLYGKGYFGKGILSRSRPNFTISNPKLAARWKGVQTDMPIITSE
                     KYQHRVEWARDFMRRQGHDESTVQKILTDYTEPLEPPYRERKGESPQHEPLSSKADSS
                     LEGREGKDELSVTTGGAGQSDDLQGLNTHSDCRQEGPGHATLTVASPSSLNGHAIEDP
                     EALSQIPCCSQEALGQQDDLWPEASSQIAGESRAAHEYVLIEEELCDVQEGAAPHDEL
                     LKRKRLVCRRNPYRIFEYLQLSLEEAFFLAYALGCLSIYYEKEPLTIVKLWQAFTAVQ
                     PTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDNFEGS
                     LRRPFSWKSLAALSRVSGNVSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSR
                     WVSSRERSDQDEL"
ORIGIN      
        1 taaccgtggg cgcgcgtggc cggagacctg ttatccttga agaatggcag aggcagtctt
       61 ccgtgctcca aagaggaaaa ggagagtgta cgagagttac gagtcaccgc tgcccatccc
      121 ctttagtcag gaccaaagtc ccaggaagga attccgaata ttccaggctg aaatgattag
      181 caacaatgtg gtggtgaggg gcacagagga catggagcag ctgtatggga agggttactt
      241 tggaaagggg atcctttcaa gaagtcgtcc gaacttcaca atctccaatc ccaagctggc
      301 tgccagatgg aaaggtgtgc agacagacat gcctataatc acctcagaga agtatcagca
      361 ccgagtggaa tgggccaggg atttcatgcg gaggcagggc catgatgaga gcactgtgca
      421 gaagatcctt acggactaca cagaaccatt ggagcctcct tacagggaga ggaaaggaga
      481 gagcccacag catgaacccc tgagctccaa ggccgactcc tccctggaag gcagagaggg
      541 aaaggatgaa ctttctgtga ccaccggagg tgctggacaa tcagatgacc tgcagggcct
      601 caacacacac tcagactgcc ggcaggaggg gcctggccat gccacactca ctgtggctag
      661 tccttctagc cttaatgggc atgcgataga ggaccccgag gctctgtccc agatcccctg
      721 ctgtagccag gaagccctcg gtcagcagga tgacctttgg cctgaagcca gcagccagat
      781 agcaggagag agtagggctg ctcacgagta tgtgctcata gaggaagagc tgtgtgatgt
      841 ccaggagggg gcagcaccac atgacgagtt gctgaaaaga aagagacttg tgtgcagaag
      901 gaacccatac aggatctttg agtatctaca gctcagccta gaagaggctt tcttcctggc
      961 atacgccctg ggatgtttaa gtatctacta tgagaaggag cctttgacca tagtgaagct
     1021 ctggcaagcc ttcactgcag tccagcccac cttcaggact acctacatgg cctaccacta
     1081 cttccgaagc aaaggctggg tgcccaaagt ggggctcaag tacggaacag atctgttgct
     1141 gtatcggaaa ggccctccat tttaccatgc aagctactct gtcatcattg agctcgtgga
     1201 tgacaacttt gaagggtccc tccgaaggcc tttcagctgg aagtcactgg ccgccttgag
     1261 cagagtctca gggaacgtct caaaggagct gatgctgtgt tacttgatta agccctctac
     1321 catgactaac gaagacatgg agaccccaga atgcatgagg aggattcaag ttcaggaggt
     1381 gattctcagc cgatgggtgt cttcccgaga gagaagtgac caagatgagc tttgaccttt
     1441 caatcccaga gtccacagtt caccatcagc ctgccctaaa ggagcattag cgcatttggg
     1501 gatcacagga ccccgtgctc tgttgcttta atagagaaat ctactcctgt agctcagccc
     1561 acccaaggac ttcaaccaat tacccacgtg actggaaacc cattgacggt ttggaaacct
     1621 tgaaacgtga ctggtgcatc ctcagtgaac tccttgtttg acaggttggt gcattgaaca
     1681 cagaactatg tagtactgac tattaaagat gcatctcgct ttggagaaat cttataaaat
     1741 aaaaataagc agtggggttt ttgagagaa
//
