LOCUS       NM_001401314            1105 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tRNA splicing endonuclease subunit 15 (Tsen15),
            transcript variant 1, mRNA.
ACCESSION   NM_001401314 XM_006249984
VERSION     NM_001401314.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1105)
  AUTHORS   Yoshihisa,T.
  TITLE     Handling tRNA introns, archaeal way and eukaryotic way
  JOURNAL   Front Genet 5, 213 (2014)
   PUBMED   25071838
  REMARK    Review article
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Feb 8, 2022 this sequence version replaced XM_006249984.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BG666181.1, FM119012.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840105,
                                           SAMN12840109 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               JAXUCZ010000013.1  67055312-67055509   c
            199-280             JAXUCZ010000013.1  67052816-67052897   c
            281-416             JAXUCZ010000013.1  67052421-67052556   c
            417-558             JAXUCZ010000013.1  67041143-67041284   c
            559-1105            JAXUCZ010000013.1  67040134-67040680   c
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q21"
     gene            1..1105
                     /gene="Tsen15"
                     /gene_synonym="RGD1308584"
                     /note="tRNA splicing endonuclease subunit 15"
                     /db_xref="GeneID:289083"
                     /db_xref="RGD:1308584"
     exon            1..198
                     /gene="Tsen15"
                     /gene_synonym="RGD1308584"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..579
                     /gene="Tsen15"
                     /gene_synonym="RGD1308584"
                     /note="isoform 1 is encoded by transcript variant 1;
                     tRNA-splicing endonuclease subunit Sen15; tRNA splicing
                     endonuclease 15 homolog; TSEN15 tRNA splicing endonuclease
                     subunit"
                     /codon_start=1
                     /product="tRNA-splicing endonuclease subunit Sen15 isoform
                     1"
                     /protein_id="NP_001388243.1"
                     /db_xref="GeneID:289083"
                     /db_xref="RGD:1308584"
                     /translation="MEERSDSEPTPGCSGPGPGPVRDGGAAHKWAPEDAWMGTHPKYL
                     EMMELDIGDATQVYIAFLVYLDLMESKSWHEVNCVGIPELQLICLLGTEIEGEGVQTV
                     VPTPISASLSHNRIREILKASRKLQGDPELPMSFTLAIVESDSTIVYYKLTDGFMLPD
                     PQNISLRR"
     exon            199..280
                     /gene="Tsen15"
                     /gene_synonym="RGD1308584"
                     /inference="alignment:Splign:2.1.0"
     exon            281..416
                     /gene="Tsen15"
                     /gene_synonym="RGD1308584"
                     /inference="alignment:Splign:2.1.0"
     exon            417..558
                     /gene="Tsen15"
                     /gene_synonym="RGD1308584"
                     /inference="alignment:Splign:2.1.0"
     exon            559..1105
                     /gene="Tsen15"
                     /gene_synonym="RGD1308584"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actcccgcgc gctggactcg gcttctggcc gggcggggtt cgcggtgcac tacggctttc
       61 tgcgcgggcg gcatggagga gcgcagcgat tccgagccta ccccgggctg tagcgggcct
      121 ggcccgggtc ccgttcgcga tggcggcgcc gcccacaagt gggctccgga ggacgcctgg
      181 atgggcacac accctaagta cttagagatg atggaattag atataggaga cgccacccaa
      241 gtttatatag cattcttggt ttacctggat ctcatggaga gtaaaagttg gcatgaagta
      301 aactgtgtag gaataccaga actacagctc atctgcctcc tgggcaccga gatcgaaggg
      361 gaaggggtgc agacggtggt gcctacgccc atttctgctt ccctcagcca taacaggata
      421 agggaaatct tgaaggcgtc tagaaagttg caaggcgatc cggagctgcc gatgtctttt
      481 actttggcca tagtggagtc agattccaca atcgtctatt ataaacttac cgacggattt
      541 atgctgccag accctcagaa tatttctctt agaagatgac ggccaccctt cttggtgctg
      601 atttcattcc tgaaagattg gatgcaaggc tcatcagcgt gcttcgtctt ttatctcaga
      661 ggtagtcagg gctgacttag ctagtcccaa cccataaact ttctttcaga acaaaacctc
      721 ggatggaaac actatattgc ttgcaaatat agttagccta gaactttctt atgagagaca
      781 gtacagtcat gggggtttac accaaggaga cgttcagagt ggcggaggct ggctgtgtct
      841 ctgctgtccc acagctctag tcgataggca ggtatccgtg agcagcatgg agacaacact
      901 acagtaagag aaggaccaca gcgttaacgt ggcatggatg cgaatgacac accaggctgt
      961 gaaagtagac aatcagatca ccagcgatgg tccctgtagg atggcagggc agcaagtgga
     1021 ctgctttcct tctctacatt tcatttgtta tttgtattag ttttataata aaacagttta
     1081 aaataaaaat atcttgaaat ctgaa
//
