LOCUS       NM_001044284            2399 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus TSC22 domain family, member 4 (Tsc22d4), mRNA.
ACCESSION   NM_001044284 XM_001059161 XM_001059346
VERSION     NM_001044284.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Canterini,S., Bosco,A., De Matteis,V., Mangia,F. and Fiorenza,M.T.
  TITLE     THG-1pit moves to nucleus at the onset of cerebellar granule
            neurons apoptosis
  JOURNAL   Mol Cell Neurosci 40 (2), 249-257 (2009)
   PUBMED   19084601
REFERENCE   2  (bases 1 to 2399)
  AUTHORS   Fiol,D.F., Mak,S.K. and Kultz,D.
  TITLE     Specific TSC22 domain transcripts are hypertonically induced and
            alternatively spliced to protect mouse kidney cells during osmotic
            stress
  JOURNAL   FEBS J 274 (1), 109-124 (2007)
   PUBMED   17147695
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1, FM034641.1 and FM049873.1.
            
            On Sep 25, 2014 this sequence version replaced NM_001044284.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.44713.1,
                                           SRR26643292.47375.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN06680448,
                                           SAMN12840108 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-45                JAXUCZ010000012.1  24588762-24588806   c
            46-621              FM034641.1         1-576
            622-1492            JAXUCZ010000012.1  24586880-24587750   c
            1493-1508           JAXUCZ010000012.1  24583949-24583964   c
            1509-2081           FM049873.1         6-578
            2082-2399           JAXUCZ010000012.1  24575948-24576265   c
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..2399
                     /gene="Tsc22d4"
                     /gene_synonym="Spacdr; thg-1pit; Tilz2"
                     /note="TSC22 domain family, member 4"
                     /db_xref="GeneID:684980"
                     /db_xref="RGD:1584380"
     exon            1..477
                     /gene="Tsc22d4"
                     /gene_synonym="Spacdr; thg-1pit; Tilz2"
                     /inference="alignment:Splign:2.1.0"
     exon            478..1492
                     /gene="Tsc22d4"
                     /gene_synonym="Spacdr; thg-1pit; Tilz2"
                     /inference="alignment:Splign:2.1.0"
     CDS             749..1912
                     /gene="Tsc22d4"
                     /gene_synonym="Spacdr; thg-1pit; Tilz2"
                     /note="TSC22-related-inducible leucine zipper protein 2;
                     uncharacterized protein C7orf61 homolog; sperm acrosome
                     developmental regulator"
                     /codon_start=1
                     /product="TSC22 domain family protein 4"
                     /protein_id="NP_001037749.1"
                     /db_xref="GeneID:684980"
                     /db_xref="RGD:1584380"
                     /translation="MSGGKKKSSFQITSVTTDYEGPGSPGASDPPAPPAPAGPPPRLP
                     NGEPNPDPGGRGTPRNGSPPPGAPASRFRVVKLPQGLGEPYRRGRWTCVDVYERDLEP
                     PSFGRLLEGIRGASGGTGGRSLDSRLELASLGISTPIPQPGLSQGPTSWLRPPPTSPG
                     PQARSFTGGLGQLAGPGKAKVETPPLSASPPQQRPPGPGTGDSAQTLPSLRVEVESGG
                     LAAGTPPLSRRRDGAVRLRMELVAPEETGKVPPIDSRPNSPALYFDASLVHKSPDPFG
                     AAAAQSLSLARSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVE
                     VLKEQIRDLAERNAALEQENGLLRALASPEQLAQLPSSGLPRLGPSAPNGPSI"
     exon            1493..1653
                     /gene="Tsc22d4"
                     /gene_synonym="Spacdr; thg-1pit; Tilz2"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1702
                     /gene="Tsc22d4"
                     /gene_synonym="Spacdr; thg-1pit; Tilz2"
                     /inference="alignment:Splign:2.1.0"
     exon            1703..2399
                     /gene="Tsc22d4"
                     /gene_synonym="Spacdr; thg-1pit; Tilz2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcaggccc gagaaggcag gacttcctgg tgtgggggtt gtcaacagcc cagaaagaga
       61 gagcccgaga cccagactga gacggagcgg agcggagctg aggagccgag agatacatcc
      121 agtggggcca cgtgggagga gccttgagag agagcgagcc actcaaggga ctggagtcag
      181 cggggggctg agccgccccc tcccacagca acagagaaga cccgtggagt gttaacggag
      241 gctgcgcctg ggctccaccg tggaagcgct ggtttcttct cgtctcaact gcaaactttc
      301 caccgagatg cctcgcagag tgagatgcgg acgccagaga acactgggca gcccttgact
      361 gctgcctgcc gtggcctgcg ctaggccgcc ttaggattaa aaaaaaaaaa aaaaaaaaag
      421 gcatctttag tccccaggtc ctctctccag ctcagctcgg tggccgaggc ccgagagttt
      481 gcaagctcag ctctggggtt tcagcagcga cagcagcagg aaaaacctgc ctctgctccc
      541 cccccccccc ctcctgccac ctcccctctc cagtcactaa ccaggcaccc ccaagttccc
      601 acaaggccct cctgccatga cggacccaga cgtccccagg ggccctgatg tccctgccat
      661 gtggccccct tgttccagag gtgcctgagc ccctcttcag gagcccagcc cctcccccac
      721 cccagcccag tccggagccc tagggaccat gagtggtggt aagaagaaaa gtagttttca
      781 gatcaccagc gtcaccacgg actatgaggg cccaggaagc ccaggggctt cggacccccc
      841 tgcccctccg gctcccgctg ggcccccgcc ccgcctcccc aacggggaac ccaaccctga
      901 tccagggggc aggggcaccc cccggaatgg ctctccgcca cctggagccc ctgcctcccg
      961 tttccgggtg gtgaagctgc cccaaggttt aggagagcct tatcgacgag gtcggtggac
     1021 gtgtgtggat gtttacgaga gagacctgga gcccccgagc ttcggtcggc ttctggaggg
     1081 aattcgaggg gcctcaggag gcaccggagg cagatcattg gattctaggt tggagctggc
     1141 tagcttgggc ataagcaccc ctatccctca gccaggcctg tctcagggcc ccacctcttg
     1201 gctccgcccg ccccctactt ctcctggacc acaggctcga tccttcacag gggggctggg
     1261 ccagctggca ggacctggca aggctaaggt ggagacgccc ccgctgtcag cctctccacc
     1321 ccagcagcgc cccccagggc ctgggactgg agatagtgct caaaccctgc cctccctgag
     1381 ggtagaagtg gagtctgggg gtttagcagc cggaacccct cctctgtcac ggagaagaga
     1441 tggagcagtt cggctgagga tggagttagt tgctccagag gagacaggga aggtacctcc
     1501 catcgactct cgccccaact ccccagccct ctacttcgat gccagcctgg ttcacaagtc
     1561 tccagaccca ttcggagctg cagcagccca gagcctcagc ctggctcggt ccatgttggc
     1621 catcagcggt cacctggaca gtgatgacga cagtggttcc ggaagcctgg ttggcattga
     1681 caacaagatt gaacaagcca tggacttggt gaagtcccac ctcatgtttg ccgtgcgaga
     1741 ggaggtggag gtgctgaagg agcagatccg ggacctggca gagcggaatg ctgcactgga
     1801 gcaggaaaat ggattgctgc gtgccctggc cagcccggag cagctggccc agctgccatc
     1861 ctcggggctc ccaaggctcg ggccctctgc acccaatggg ccttccatct gagccttctt
     1921 tccctcacaa tgtgcctttg ggggctgcca ctggccgccg ggccttgtgc cagcagcctg
     1981 ccccctcttc ctatgtagct ttaatgccca cgcccgaccc caatgcccag ggatgggagt
     2041 tgaggctaaa tattggcctg tcccttccca cctggtctcc ccagaagcct caggccttgc
     2101 cggaagagaa agaacccagg aggggatgtt tatctgaagc ccctcatcca tgaaagaacc
     2161 cagccccacc tccttccctg ggaatcagtg ttctggggag cccctcagca gcagatggct
     2221 cagaaagatt tggaggttcc ctggcaggcc ccctcaccat cccaccttgt tctcttcaag
     2281 tgccccctct cctctgccca gggagggggt atggacagta tcttcaactt cttggattca
     2341 ggttgttatt aaaataataa ttataattaa aaaaaaatct gaagaaactt gaatatgga
//
