LOCUS       NM_001191960            4606 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus TSC22 domain family, member 2 (Tsc22d2), mRNA.
ACCESSION   NM_001191960 XM_574948
VERSION     NM_001191960.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4606)
  AUTHORS   Fiol,D.F., Mak,S.K. and Kultz,D.
  TITLE     Specific TSC22 domain transcripts are hypertonically induced and
            alternatively spliced to protect mouse kidney cells during osmotic
            stress
  JOURNAL   FEBS J 274 (1), 109-124 (2007)
   PUBMED   17147695
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jul 17, 2010 this sequence version replaced XM_574948.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.6137.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1922              JAXUCZ010000002.1  144797040-144798961
            1923-1994           JAXUCZ010000002.1  144809712-144809783
            1995-2046           JAXUCZ010000002.1  144840327-144840378
            2047-4606           JAXUCZ010000002.1  144841008-144843567
FEATURES             Location/Qualifiers
     source          1..4606
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q26"
     gene            1..4606
                     /gene="Tsc22d2"
                     /note="TSC22 domain family, member 2"
                     /db_xref="GeneID:499624"
                     /db_xref="RGD:1593169"
     CDS             1..2307
                     /gene="Tsc22d2"
                     /codon_start=1
                     /product="TSC22 domain family protein 2"
                     /protein_id="NP_001178889.1"
                     /db_xref="GeneID:499624"
                     /db_xref="RGD:1593169"
                     /translation="MSKMPAKKKSCFQITSVTTAQVATSITEDTESLDDPDESRTEDV
                     SSEIFDVSRATDYGPEEVCERSSSEETLNNVGDAETPGTVSPNLILDGQLAAASAVPA
                     NGGGGVPARSVAGALSQTLAAVATSVSAPGPSSATPSQPPATCSSRFRVIKLDHGSGE
                     PYRRGRWTCMEYYERDSDSSVLSRSGDCIRHSNTLEQTAERDSGLGATGGSVVVVVAS
                     MQGAHGLDSGTDSSLTAVSQLPPSEKMSQPTLAQPQSFSVGQPQPPPPVGGAVAPSSV
                     SLPLFPGAATGSQPMTAATQPTQLQGAVAGGALPGPVGQGLPPPPNVNLAQPVALTAQ
                     PGPAVGSSLSQQFAYPQPPIPPGHLLPVQPSGQSEYLPPHVALQPPSPAQPLSTSASA
                     TSASAASFPLGSGQSVSSLGAQMMGASAQPSEVVAPGPVPVGQAAPCQPAGVAPAAIG
                     GVVQPGSGLTGVGQPQSVQPPPHMGGSVQLSAVPGGPHTVVPGVPNVPAAVPVPSVPV
                     VPTTSVTMPNVPAPLGQSQQLSGHTPVSRSSSVIQQVGPPLAQGTHSAPTSLPQSDLS
                     QFQTQTQSLVRQIDDTRRKSEPLPQAPLSLIAENKPVVKPPVADALANPLQLTPMNSL
                     ATSVFSIAIPVDGDEDRNPSTAFYQAFHLNTFQESKSLWDSASGGGVVAIDNKIEQAM
                     DLVKSHLMYAVREEVEVLKEQIKELVERNSLLERENALLKSLSNNDQLSQLPAQQANP
                     GSTSQQQAMIAQPPQPTQPPQQPNVSSA"
     exon            1..1922
                     /gene="Tsc22d2"
                     /inference="alignment:Splign:2.1.0"
     exon            1923..1994
                     /gene="Tsc22d2"
                     /inference="alignment:Splign:2.1.0"
     exon            1995..2046
                     /gene="Tsc22d2"
                     /inference="alignment:Splign:2.1.0"
     exon            2047..4606
                     /gene="Tsc22d2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtccaaga tgccggccaa gaagaagagc tgcttccaga tcaccagtgt caccacggcc
       61 caggtggcca ctagcatcac cgaggacacc gagagcctgg acgacccgga cgagtcgcgc
      121 acggaggacg tgtcctccga gatcttcgac gtttctcggg ccacggatta cggcccagag
      181 gaggtgtgcg agcgcagctc ctcggaagag acgctcaaca atgtcgggga tgcggaaact
      241 cccgggactg tgtccccgaa cctcatccta gatgggcagc tggcagccgc ttcagctgtg
      301 cccgccaacg gaggcggcgg cgtgccggcc cggagcgtgg caggggcact ctcccagacc
      361 ctggcggcgg ttgccacttc agtgtctgct cctgggccaa gtagtgcaac tccatctcag
      421 ccccctgcca cttgtagttc ccgtttccgc gtgatcaaac tagaccacgg gagcggagag
      481 ccgtatcggc gcggccgatg gacgtgtatg gaatactacg agcgggattc agatagtagc
      541 gtcctcagta ggtccgggga ttgcattaga cacagcaata ctttggagca gactgcagag
      601 cgggacagcg gcttgggcgc caccggaggg tcggtggtgg tggtggtggc ctccatgcag
      661 ggggcgcacg ggctggactc gggaactgac agctccttga ctgctgtgtc acagctaccc
      721 ccgtcggaga aaatgagcca gcccactctc gcccagccgc agagtttcag cgttgggcag
      781 ccacagcctc caccgcccgt aggtggggct gtggctccaa gttcggtgtc gctgccgctg
      841 ttccccggag cagcgaccgg gtcgcagcca atgacggcag ccactcagcc aactcagctc
      901 cagggagccg tagccggcgg cgccctcccc gggcctgttg gccaggggct gccgccgccg
      961 ccgaatgtca acctggcaca gcctgtggcc ctgacagctc agcctggccc ggcggtcggc
     1021 tcctcgttgt cacagcagtt cgcctatccc cagcctccga taccacccgg gcatttgttg
     1081 ccggtccagc catcgggcca gagtgagtac ctgccgccgc acgtggccct gcagccacca
     1141 agccctgcgc agcccttgtc taccagcgct agcgcgacct ctgcttcagc ggccagcttt
     1201 cctctgggat ctggccagag cgtttcttcc ttgggtgccc agatgatggg cgcctctgcc
     1261 cagcccagtg aagtcgtggc cccgggtccg gttcccgtgg gccaggccgc tccttgtcag
     1321 ccggccggag tggccccagc tgctatagga ggcgtggtgc agcctggctc tgggctgacc
     1381 ggggttgggc agccccagtc cgtgcagcct ccgccacata tgggtggcag tgttcagctg
     1441 tcagccgtgc ctggtggtcc tcacaccgtg gtgcccggag ttccaaacgt gcctgcagcg
     1501 gtacccgttc caagcgtgcc tgttgtgccc accacttctg ttactatgcc aaatgtaccc
     1561 gcgcctctgg gccagtctca gcagctgagc ggccatacgc cagtcagccg gagcagcagc
     1621 gtcatccagc aagttggtcc acccttagcg caaggcacac acagtgcacc aacaagtcta
     1681 ccacagtctg atctaagcca gtttcagact cagacccagt ctttagtcag gcaaattgac
     1741 gatactagaa gaaaatcaga acccctacct caagcaccac tttctctcat tgctgaaaat
     1801 aagcctgttg tgaagcctcc agttgcagat gccctggcaa accctcttca attaacacct
     1861 atgaacagtc tggccacctc tgtattcagc atagctattc ctgttgatgg tgatgaagac
     1921 aggaatcctt caaccgcttt ctaccaagcg ttccatttga acacgtttca ggaatcaaag
     1981 agcctctggg atagtgcatc tgggggcggt gttgtagcca ttgacaacaa aatagaacaa
     2041 gcaatggatc tggtgaaaag ccatttgatg tatgcagtaa gagaagaagt ggaagttcta
     2101 aaggagcaga taaaagaatt agtggaaaga aactctttac ttgaacgaga aaatgcactg
     2161 ttaaaatctc tttcaaacaa tgatcagttg tcccaactcc cagcccaaca ggccaaccct
     2221 ggtagcactt ctcaacaaca agcaatgata gcacagcctc ctcagccaac gcaacctcca
     2281 cagcagccga atgtctcctc agcataaagc tttcctaagc ctcgctaagg aaaaactgaa
     2341 agcaatcttt ccttgtgtgc cactggtgtt ctttccactt tatagaaagc aagtagccat
     2401 gcttcggctg tgtgcttggc cttttcagta ttagacaatc gttctacagg agctttccct
     2461 ctctaagatg tcatgcagca ctgttgatgt ccacttctgt gtcatcagta cacgaggaga
     2521 atactagatg gggtttatta aagcaagcag agtctgcatt ctacatgtgc gcatgagtgg
     2581 gatctttaaa agttttggtg gctctcctat gtttcttacc acccatggat gtaccttgag
     2641 ccttcctgtc gcattataaa taacagttca tctaaagagc cacttttctt tcaatatcag
     2701 taacatttgc ctacataagt tttcattcat ttattttgtg ttttatttat tacagggctg
     2761 ctattttcat attgtacatg aacaatgtca cagaactttt ttaattttct tgaataatta
     2821 taagtatcag taaaggaatt gaacgacagg attacattta ataaataaaa acgtttaggc
     2881 aataattgaa caaaagaatc ctggcacatt tctaacacta atggcaattt accgttggta
     2941 tttattttca atagtaaaga tccagcttga atgtaaattt tgtatagttg taagtatgaa
     3001 aaacacagtg cacctgtaca ggtagtcacc agttattgtg atataataat aattgggcta
     3061 ttttcatgaa gaaaacgttg ttcatttgtt tctactttct aatagaaatt gccacgattc
     3121 ctctgctttt caacatttcg tatgactttt tttttttttt tttttttttc gggtgggaat
     3181 aaaaaaagct gtgaaattgt tcaacctact ttgtaaccaa agaagcaaag ctgtgtaatg
     3241 gagttttgtt ttgttttata atgcacattc tttatgtatt tttatttagt gttttcttgg
     3301 tcacaatttt ctttgctgtc tagcatgatc tgcatggcct gtaatctttg aaccactttc
     3361 gtacctcatg tttttatcca gcactcttat tgtactgtgt actagtctgt gaacaatgtc
     3421 aaataaaaaa gagcgaacag gtcgtatggt ggagctgagc tagtgtacaa tgcaccagtt
     3481 gtacagaaac aaaaatgaag tgagccatct tttgttcatt taaaatggtg ttttgaattt
     3541 catatgcaga aaacgttttg ttacattgca gattttaatg tatttaataa atgcaacatg
     3601 cagattaagt gcagtgtata ctgagtattt aaattaaaat gtacatttca taaatacagt
     3661 ttcaagagaa agcatcattt tgtgtatact aacacattaa gtgtatgtca gaaattgatg
     3721 taaaaatata tattttaaca cattttctga aattaaacta cagttttgtt caaatatttg
     3781 gctctatatg tgttcagaat ttgactagat ttgtattttc acagttcaaa atattcctta
     3841 agtgaacacc catgatgtta atgacaatga tagttcttaa attttcaaag taaagtaatt
     3901 taaagaacac aagaatggtg agcaatattt gtactcaata ttcatattat gttaacaata
     3961 taaataggaa atccttgtct accaaaactt ttacttgaat tcagaaaggt gcctgtagaa
     4021 atgaacatgt cctgtatggg tagcccacta gccaattaag tcttaattaa catgtcctgt
     4081 atgggtagcc cactagctaa ttaagtccta atgagaaaca gtagttgctc tccatgttag
     4141 aagaggttaa atgttcttta tctatttgaa atgttctagc tttgaacaaa agacataaaa
     4201 ttgaaacata catgagatta ccaaatattt tatattctag ttgtgctacg agaaataatg
     4261 ttcagtaagc aaaattttca tgttaattat taatattaga aatacattaa agaataggta
     4321 agtatgttga cttgagtatg taataaccct aaggattcag aatgagattc tagtagagcc
     4381 actgtgggca agataggatg tgaaactgct gttggaatat aaacctgaag atttctctcc
     4441 atgcccactt cattgctaat agtgtggtac ttcatacaaa gaatattaga aaagggttgc
     4501 aaaaggagac agttaagtgg tagatggctg cccaagaatg cacaagatct tctgtttgtt
     4561 tgatgcctgg cacttaaaag aaaaaaaatg tttttgtgaa aaaaaa
//
