LOCUS       XM_039084683            3342 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TruB pseudouridine synthase family
            member 1 (Trub1), transcript variant X2, mRNA.
ACCESSION   XM_039084683
VERSION     XM_039084683.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3342
                     /gene="Trub1"
                     /note="TruB pseudouridine synthase family member 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 16 ESTs, 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 134 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361775"
                     /db_xref="RGD:1308502"
     CDS             284..955
                     /gene="Trub1"
                     /codon_start=1
                     /product="pseudouridylate synthase TRUB1 isoform X2"
                     /protein_id="XP_038940611.1"
                     /db_xref="GeneID:361775"
                     /db_xref="RGD:1308502"
                     /translation="MEQEAKADIESWTRRDTGQRSARCSGGWDWKRNKNVDQYVVGVQ
                     EVYRHWRTGESHGHTGFYREGNRGEAICYSALKKDGQRLSTLMKRGETVEARPARPVT
                     VHSISLLKYQPPFFTLDVECGGGFYIRSLVSDIGKELSSCATVLELTRTKQGPFTLAQ
                     HALPEDRWTINDIAQSLKRCTSLLPEELTFKKSKSEPSSDQALSCGYITLRETKREDD
                     TVKTL"
ORIGIN      
        1 gcatggcagc tgaggaggcc gaggtggttt cacctctgat tgtggacaca gccccagaca
       61 cttcaggaac agccgcggcc tcactagccg cagcggtgtc tgctgctgcg gcagcggcta
      121 ggactggatc gcaagcccag gtttccaagg ccgctctggc tgctaagctc atgtcgctca
      181 gcggcgtgtt cgccgtgcac aagcccaaag ggcccacttc agccgagctg ctgaaccggc
      241 tgaaggagaa gctgctggca gaagctggat tgccatctcc agaatggaac aagaggcaaa
      301 agcagacatt gaaagttgga cacggaggga cactggacag cgcagcgcaa ggtgttctgg
      361 tggttgggat tggaagagga acaaaaatgt tgaccagtat gttgtcgggg tccaagaggt
      421 atatcgccac tggagaactg gggaaagcca cggacacact ggattctacc gggaaggtaa
      481 cagaggagaa gccatatgct attctgcact gaagaaggat ggacagagac tctcaacgtt
      541 aatgaagaga ggcgagactg ttgaggccag gccagccagg ccagtgactg ttcacagcat
      601 ctccctcctg aagtaccagc caccgttctt cacgctagat gttgaatgtg gaggaggctt
      661 ttacatccga agcttggtca gtgacattgg caaagaactc tcttcctgtg ccaccgtgct
      721 ggagctgacc cgcaccaaac aggggccctt tacactggca cagcatgcgc tccccgaaga
      781 cagatggacc atcaatgaca tcgcacagtc cctcaagcgc tgcacgtccc ttctgccaga
      841 ggagctgacg tttaaaaaat ccaaatccga gccgtccagt gaccaggcct taagctgtgg
      901 gtacataact ctaagggaga caaagagaga agacgacaca gttaagacgc tttgagcccg
      961 gccggggagg atcatttccg ggttggtgta tatcctgacc tgacccagga atgcccacac
     1021 acttcttcag gtctttgcaa gatgtcgtaa tgtctctgaa tgatggatat gactggattc
     1081 agataaataa gttttctgaa tttgatcttc ccttagtctt tttcctgtga aaaagttgaa
     1141 cagaattcta gtcacagagg actgaggtct gagctgcaag tcccacagag gtatcatatc
     1201 cactctgtca gactggggga gggcgctcat tgttctgaaa tcctcttaat attcgaagtg
     1261 ctcagtgctg agccatcccg tcctgtgtgt ttgcagagct gtggctgctg ggaagcgctg
     1321 gtgggctgaa gtcatctgtg actgtgtttc ttagatcttg aaatgaaacg tttccctaat
     1381 aaatatttgt aagtgcacaa actcctgctc cgaccactgg cagagtggaa atagctgaag
     1441 aggtgattca ttccatccct attttcagca gagttcggct cctggagctg tgtactctgt
     1501 ggcagctatt tctgtggtca gccacatggt gtcaagttac taaaaaggga tctttcagaa
     1561 tataaactaa aggatgtatc ttgaattaaa attctctgct gcccgttctt tagtgcctct
     1621 ccgtgactgc ggaacctgat ccagtgacat ggcttctgga gttactagga acatgatcac
     1681 attttaaaac aaattcttat gagtgcgtca ttgtttggtc atgggaatgt ctattctttc
     1741 attgtgtgtt gagaggcaag gactctctgc ctgtccagca ggcgttgggg tgtagacccc
     1801 accccccccc cagcaggtgg cccttgttac ttcagctacc ggagacacaa cacccacctc
     1861 cggcctcgtg ggcccgtgaa cacccaggcc tccacacaca taaataaaat aattacttta
     1921 aaaggtatag agacttagtg caggatgccc cctcatgtag ccaggcttcc tcctctttct
     1981 acctcccaag tgtagagact acgggcatca ccgctgtctc ctacaggact gtaatgcggt
     2041 ctacactgtg gtttattatg tgatttatta acctttcatc agacacaagt ttttatattc
     2101 catacctttt cttttcagag gttgttgcct ctaaaatatt ttaaataggt aggctgatgg
     2161 ttttattgtg gttaatgtaa tgtaaaccta atgtaagatg ttaggtgctt caacaggaca
     2221 ttcttggtat actggcaaca ttcttaataa aattatcaaa ggtaactctg ggaggcaaga
     2281 aggctcagcg ggtgacccca ggactgatga cttgagtttt gatcctgggc gacctatgtg
     2341 agaacttact ccctactaat tgtccacaga caccctgcag tgtgcacaca cccatgccca
     2401 cctccacaca cattaaacaa aagaatggaa tgtttttaca tttaaagact attcgtaaga
     2461 acaaaacaaa aacaaaacca accccccccc acccagtgtt gtattatggt aaattcatga
     2521 actagaagtt ttgtagtttt gaacctggtg tcatggtgaa tctttaatcc cagcatgcag
     2581 gaggcatggg cttgtggctc tctgtgagtt caaggtcagc caggaccaca gagtgagacc
     2641 ctgcatgatt atatttttcc ttactccttc ctagtgtcct gtaatttgtg taaccaaagg
     2701 tgatgttaga tcctgctgcc tgttagaaca actcagtctg cacatagtgt gtcttcatga
     2761 acagctcaaa tctgaataga ctacacagct taggggctgc ttttttcctt tttttctttt
     2821 ttcaatttaa aatttatgtc tacactcttg tcatagaaga gagtagaatt tatgaaaaag
     2881 caagcaagtt ctagaaacag tagcctgtct tttccttttg tttgaaaatg ctggagaaat
     2941 tatgtagatt tttaaaatgc ccataatgtt caccatctta ttgcattcat tttggatttt
     3001 atttttatat tatattttcc tctttattta ggtgtgctct aaagactttc catatgattt
     3061 tatctgagtg tgtttagtcc tgatgagtat accagtcctc ggttcattta aactgctttc
     3121 ctggggctgc acacaggagc agccattttc ttaggacaca ttcttgtagt gttattttag
     3181 ggaaagcaat gagaacagtt ctgtggcccc cgggctgcaa catttcatac caccattgtt
     3241 cggggatttc atacagtgtt attaaaagtt ctctgccttt gcgtgaccta ccttcactcc
     3301 ctgttcattt gtataaataa acatctcggt ggtttctttg ta
//
