LOCUS       XM_039100325            1700 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TRPC5 opposite strand (Trpc5os),
            transcript variant X3, mRNA.
ACCESSION   XM_039100325
VERSION     XM_039100325.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100325.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1700
                     /gene="Trpc5os"
                     /note="TRPC5 opposite strand; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100909489"
                     /db_xref="RGD:6503255"
     CDS             905..1237
                     /gene="Trpc5os"
                     /codon_start=1
                     /product="putative uncharacterized protein TRPC5OS"
                     /protein_id="XP_038956253.1"
                     /db_xref="GeneID:100909489"
                     /db_xref="RGD:6503255"
                     /translation="MESVSIPALVAGLIDCVAQLIRIAEELLQFISQEQAPSVQPNPR
                     AEEAEAVALPPEEDSLPDLADLSDLESILSVKEDEDLILDMDEAMIDINEIYEDILPA
                     IKDDTESE"
ORIGIN      
        1 acaaaacaaa agacccaaac agcacagtag ggatgagcag tctgttatca ctaagcatcc
       61 atgacaccat taggtatgga tgactactca tgctctggtc tcgattttat catcttgttc
      121 tttcatgatc aacagaaact ttcaatatcc tataataagc cagggtttta catggatggc
      181 cacctatttc cttacagtgg gattgatatg ctaatgtcac agggttcaga aggtctacaa
      241 atcctagcgc ttagttagct ttggaaaaag cacagaaggc tctttactgc aattctagtc
      301 tatccattat ctttctcctg aaccgtggat tgcacatgca agccctagct aagtctcggg
      361 tagataggag cactgcttcc atatctgtta caatgttatt acaaagtata agtgtctttg
      421 aaaaagtcca gaacatgtga ctggggcaaa aatatacttg caggttgggt gtcacaaaaa
      481 aacacatccc ttgctttctt gagggatatc ataactgctt cctgtgtcac acgacaaata
      541 tggctgggtg cagtggagct gaaggcagtc ttgtttcctt ctgcagtggg gtaccttttt
      601 gaggagtgtg cctgtgtcag tagagcttcc tacccagggg ccagcctagg cctcaactta
      661 tcccaggagt gtttgtggac tatttgaaag cagaactcca gagatcactt tctaggacaa
      721 cacctttgtc catcttgact tgattacagg tccaattggc tgtttggcac tccagtggtg
      781 attataataa taatagacta ctagtataga cattttgtga ggttaaccaa catcaccaaa
      841 aagttttata gtcctgctag actctagact cactgtgtac ttgattgcaa cacctgtctg
      901 aggcatggaa tctgtgtcaa tccctgcgct cgttgctgga cttattgatt gtgtagccca
      961 gctaataaga atagctgagg aactattaca gttcatctcg caggagcaag ctccttctgt
     1021 gcagccgaat cctagagcag aagaggcaga agcagtcgca cttcctcctg aggaagattc
     1081 cctaccggat cttgcggatc tttccgactt agaatccatc ctttcagtaa aagaagatga
     1141 agacctcatc cttgacatgg atgaagctat gatagatatc aacgagatat atgaggatat
     1201 acttcctgcg ataaaggatg atacagaaag tgagtgagag ccagcgtgtg aaatttatca
     1261 tttttccatt tcttttttct aagcttcaga aatagctgtt ttattctagt tctgcatagt
     1321 ttcatcatta aaaactttta gattaggtaa accttgattc ctttatgaca aaatgaatat
     1381 ttctaagttt tagccaaaag actggcttta gttaaatagt tcttgcttta cttgtactat
     1441 taggattctt catgataaga ccaaataata tcaaagagaa gaatctacct aagaatagaa
     1501 tgaagaactg atgaacccga ccagtactca cccccagtgt cactgctctg cgataaatag
     1561 aaattctgag ggtagtgctc cccagaatgg tattacagtg agtattttct cacagacact
     1621 gcgacattgg cacattgtat cttacagagg gaggtttttt tatggcagag taagtaaatc
     1681 attctgggac tgtagtgtct
//
