LOCUS       NM_001100748            3145 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus transient receptor potential cation channel,
            subfamily C, member 4 associated protein (Trpc4ap), mRNA.
ACCESSION   NM_001100748 XM_001064857 XM_001064955 XM_001074519 XM_342553
VERSION     NM_001100748.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3145)
  AUTHORS   DiTommaso T, Jones LK, Cottle DL, Gerdin AK, Vancollie VE, Watt FM,
            Ramirez-Solis R, Bradley A, Steel KP, Sundberg JP, White JK and
            Smyth IM.
  CONSRTM   WTSI Mouse Genetics Program
  TITLE     Identification of genes important for cutaneous function revealed
            by a large scale reverse genetic screen in the mouse
  JOURNAL   PLoS Genet 10 (10), e1004705 (2014)
   PUBMED   25340873
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3145)
  AUTHORS   Choi SH, Wright JB, Gerber SA and Cole MD.
  TITLE     Myc protein is stabilized by suppression of a novel E3 ligase
            complex in cancer cells
  JOURNAL   Genes Dev 24 (12), 1236-1241 (2010)
   PUBMED   20551172
REFERENCE   3  (bases 1 to 3145)
  AUTHORS   Hendrickx A, Beullens M, Ceulemans H, Den Abt T, Van Eynde A,
            Nicolaescu E, Lesage B and Bollen M.
  TITLE     Docking motif-guided mapping of the interactome of protein
            phosphatase-1
  JOURNAL   Chem Biol 16 (4), 365-371 (2009)
   PUBMED   19389623
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474050.2.
            
            On or before Oct 12, 2007 this sequence version replaced
            XM_342553.3, XM_001074519.1, XM_001064857.1, XM_001064955.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166758.1, AY724540.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3145
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..3145
                     /gene="Trpc4ap"
                     /note="transient receptor potential cation channel,
                     subfamily C, member 4 associated protein"
                     /db_xref="GeneID:362247"
                     /db_xref="RGD:1309914"
     exon            1..207
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..2433
                     /gene="Trpc4ap"
                     /codon_start=1
                     /product="short transient receptor potential channel
                     4-associated protein"
                     /protein_id="NP_001094218.1"
                     /db_xref="GeneID:362247"
                     /db_xref="RGD:1309914"
                     /translation="MAAAPAAAGAGASRGRRSAATAAAWGGWGGRPRPGNILLQLRQG
                     QLTGRGLVRAVQFTETFLTERDKLSKWSGIPQLLLKLYATSHLHSDFVECQSILKEIS
                     PLLSMEAMAFVTEDRKFTQEATYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISD
                     EMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVK
                     KEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKS
                     LSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALV
                     LDALMRVANEDSEHSQASTVFPPLGTSEESGLPHNSARTQLPQSMKIMHEIMYKLEVL
                     YVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHGHNQNCDCSP
                     DITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEAVLNTDRSLVC
                     DGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILY
                     CIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDS
                     NMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLT
                     QENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHY
                     LHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYMDIDRDFTEE"
     exon            208..336
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            337..453
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            454..511
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            512..567
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            568..696
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            697..904
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1090
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1257
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1389
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1448
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1550
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            1551..1634
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            1635..1725
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            1726..1866
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            1867..1975
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            1976..2088
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            2089..2295
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
     exon            2296..3145
                     /gene="Trpc4ap"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttcgggaccg cttgcttcct gtttgtcgga cgaggagaca tggcggcagc gcccgcagcg
       61 gctggagctg gggccagccg ggggaggcgg tcggccgcta ccgcggcggc gtggggcggc
      121 tggggaggtc ggccgcgacc gggtaacatc ctgctgcagc tgcggcaggg ccagctcacc
      181 ggccgaggcc tggtccgagc ggtgcagttc actgagacct ttttgaccga gagggacaaa
      241 ttgtccaaat ggagtggaat tcctcagttg ctccttaagc tgtatgccac cagccatctg
      301 cacagtgact tcgttgagtg ccaaagcatt ctcaaggaga tttctcctct tctctctatg
      361 gaggctatgg cgtttgtgac tgaagacagg aaatttactc aagaagctac atatccaaat
      421 acatatattt ttgacttatt tggaggcgtt gatcttcttg tagaaattct tatgaggcct
      481 accatctcta tccggggaca gaaactgaaa ataagtgatg agatgtcgaa ggactgcttg
      541 agcatcctgt acaatacctg tgtctgtacg gaaggagtaa caaagcgttt ggcagaaaag
      601 aatgattttg tgatttttct gttcacactg atgacaagta agaagacgtt cttacaaaca
      661 gcaactctca ttgaagacat tttgggtgtt aagaaggaaa tgattcggct agatgaagtt
      721 cccaatctga gttccttagt atccaatttt gatcagcagc agcttgctaa cttctgcagg
      781 atcctggctg tcaccatttc agagatggac acagggaatg acgacaaaca cacgcttctt
      841 gccaaaaacg ctcagcagaa gaagagcttg agtttggggc cttctgcagc tgaaatcaac
      901 caagctgctc ttctcagcat ccctggcttt gtggaacggc tttgcaaact ggcaactaga
      961 aaagtgtcag agtcaacggg cacagccagc ttccttcagg agctggagga gtggtacacg
     1021 tggctggaca atgcgctggt gctggacgcc ctgatgcgag tggccaatga ggattctgag
     1081 cacagtcaag cctccactgt gttccctcct ctaggcactt cggaggagag cgggctgccg
     1141 cataactcag ccaggacgca gctgccgcag tcgatgaaga tcatgcatga gattatgtac
     1201 aaactggagg tgctctatgt cctctgtgtg ctgctcatgg ggcgtcagcg aaaccaggtc
     1261 cacaggatga ttgctgagtt caagttgatc ccaggactca acaatttgtt cgacaaactg
     1321 atttggagga agcattcagc atctgctctt gtcctccatg gtcacaacca gaactgtgac
     1381 tgtagcccgg atatcacctt gaagatccag tttttgagac ttctccagag tttcagtgac
     1441 caccatgaga acaagtacct gctgctcaac aaccaggagc taaatgaact cagtgccatc
     1501 tctctgaaag ccaacatccc tgaggtggaa gccgtcctca acactgacag gagtctggtg
     1561 tgtgacggca agaggggctt actaactcgg ctgctgcagg tcatgaagaa ggagccagca
     1621 gagtcttcat tcaggttttg gcaagcccgg gctgtggaaa gttttctccg agggactacg
     1681 tcctatgcag accagatgtt cctgctgaag cgaggccttc tggagcacat cttatactgc
     1741 attgtggaca gcgaatgcaa gtcgagggat gtactccaga gctactttga cctcctggga
     1801 gagctgatga agttcaacgt tgatgcattc aagagattca ataaatatat caacactgat
     1861 gcaaagttcc aggtgttcct gaaacagatc aacagctcgc tagtggattc taacatgctg
     1921 gtgcgctgtg tcactctgtc gctggaccga tttgaaaacc aggtggacat gaaagtggcc
     1981 gaggtcctgt ccgagtgccg cctgctcgcc tacatatccc aggtgcccac gcagatgtcc
     2041 ttcctcttcc gcctcatcaa tatcatccat gtacagacac taacccagga gaacgtcagc
     2101 tgcctcaaca ccagcctggt gatcctgatg ctagcccgtc ggaaagagcg gttgcccctg
     2161 tacctgcggc tgctacagcg gatggagcac agcaagaagt accctggctt cctgctcaac
     2221 aacttccaca acctgctgcg cttttggcag cagcattacc tgcacaagga caaggacagc
     2281 acctgcctgg agaatagctc ctgcatcagc ttctcatact ggaaggagac cgtgtccatc
     2341 ttgttgaacc cagaccgcca gtcgccctcc gccctggtca gctacattga agagccctac
     2401 atggacatag acagagactt cactgaggag tgaccttgag ccaggcttcg agaagctgct
     2461 gggccggggc gagtgcagtg agcaagggtg cacacgccac gcactctgcc cacccctgtc
     2521 cctctcttgc ctccccagtg ctctgtctac cccgggtgct caggtgcagg ctcggtggaa
     2581 ggaacatcct acaagttctt gtctcctggg tctgagggcc caggccattg gggagcctgt
     2641 gtcttcactg tccccagggt aaggacaatg gcaccatgcc cacctttccc tcacactcct
     2701 ggagccctgg cctgccagag aaagggaaca tggaaaccat ctctgcctga gctcctccca
     2761 tcagtcccac gatggaagga agatgcagac ccctgtgagc caagcctccc tggcctcagg
     2821 gcacaggcag agctcctgag ccctgggcag ggttgggcat cagagaatgc tgccttcccc
     2881 aggtctaccc atctctcctc ccgacctccc ttgtcttcct ttagctcctc tggttctttg
     2941 ctcattggcc actgtgttca tcctggaggt tccccggaag tggggggcct tttctctcca
     3001 tccctttggg gcatggagtg cctgtgcctg cctgagccca gacacgggag cctggctgag
     3061 agcttaccct tggctcctcc tgtgttgcca gtttattaac agcaaataaa ccaattaaat
     3121 ggagactatt aaagaacttt atttt
//
